data_6QQK # _model_server_result.job_id rVrR3bCNCgBO07Vbrb-IkQ _model_server_result.datetime_utc '2024-11-13 00:14:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6QQK # _exptl.entry_id 6QQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQK _cell.length_a 41.45 _cell.length_b 41.45 _cell.length_c 133.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 426 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id FMN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FMN _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id C _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id C _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.811 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6QQK _atom_sites.fract_transf_matrix[1][1] 0.024125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 HOH A 1 1101 3 HOH HOH . C 3 HOH A 2 1102 4 HOH HOH . C 3 HOH A 3 1103 5 HOH HOH . C 3 HOH A 4 1104 1 HOH HOH . C 3 HOH A 5 1105 6 HOH HOH . C 3 HOH A 6 1106 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . A . B 2 7.664 1.614 12.651 0.5 26.83 ? N1 FMN 1001 A 1 HETATM 2 N N1 FMN . C . B 2 7.017 1.926 13.466 0.5 41.42 ? N1 FMN 1001 A 1 HETATM 3 C C2 FMN . A . B 2 8.283 1.891 13.83 0.5 26.8 ? C2 FMN 1001 A 1 HETATM 4 C C2 FMN . C . B 2 7.493 2.102 14.722 0.5 41.63 ? C2 FMN 1001 A 1 HETATM 5 O O2 FMN . A . B 2 9.034 2.889 13.894 0.5 26.64 ? O2 FMN 1001 A 1 HETATM 6 O O2 FMN . C . B 2 8.136 3.145 14.961 0.5 42.42 ? O2 FMN 1001 A 1 HETATM 7 N N3 FMN . A . B 2 8.121 1.138 14.934 0.5 26.71 ? N3 FMN 1001 A 1 HETATM 8 N N3 FMN . C . B 2 7.305 1.209 15.715 0.5 41.51 ? N3 FMN 1001 A 1 HETATM 9 C C4 FMN . A . B 2 7.33 0.056 14.94 0.5 26.76 ? C4 FMN 1001 A 1 HETATM 10 C C4 FMN . C . B 2 6.657 0.05 15.528 0.5 41.11 ? C4 FMN 1001 A 1 HETATM 11 O O4 FMN . A . B 2 7.188 -0.635 15.969 0.5 26.74 ? O4 FMN 1001 A 1 HETATM 12 O O4 FMN . C . B 2 6.47 -0.737 16.48 0.5 41.21 ? O4 FMN 1001 A 1 HETATM 13 C C4A FMN . A . B 2 6.62 -0.314 13.696 0.5 26.62 ? C4A FMN 1001 A 1 HETATM 14 C C4A FMN . C . B 2 5.989 -0.176 14.231 0.5 40.82 ? C4A FMN 1001 A 1 HETATM 15 N N5 FMN . A . B 2 5.814 -1.392 13.641 0.5 26.41 ? N5 FMN 1001 A 1 HETATM 16 N N5 FMN . C . B 2 5.343 -1.431 13.856 0.5 40.96 ? N5 FMN 1001 A 1 HETATM 17 C C5A FMN . A . B 2 5.175 -1.713 12.496 0.5 26.4 ? C5A FMN 1001 A 1 HETATM 18 C C5A FMN . C . B 2 4.85 -1.573 12.606 0.5 40.96 ? C5A FMN 1001 A 1 HETATM 19 C C6 FMN . A . B 2 4.347 -2.826 12.463 0.5 26.3 ? C6 FMN 1001 A 1 HETATM 20 C C6 FMN . C . B 2 4.131 -2.72 12.303 0.5 40.73 ? C6 FMN 1001 A 1 HETATM 21 C C7 FMN . A . B 2 3.684 -3.166 11.292 0.5 26.47 ? C7 FMN 1001 A 1 HETATM 22 C C7 FMN . C . B 2 3.637 -2.918 11.023 0.5 40.86 ? C7 FMN 1001 A 1 HETATM 23 C C7M FMN . A . B 2 2.786 -4.375 11.25 0.5 26.62 ? C7M FMN 1001 A 1 HETATM 24 C C7M FMN . C . B 2 2.858 -4.167 10.704 0.5 40.99 ? C7M FMN 1001 A 1 HETATM 25 C C8 FMN . A . B 2 3.859 -2.335 10.076 0.5 26.52 ? C8 FMN 1001 A 1 HETATM 26 C C8 FMN . C . B 2 3.875 -1.898 9.971 0.5 41.03 ? C8 FMN 1001 A 1 HETATM 27 C C8M FMN . A . B 2 3.138 -2.706 8.809 0.5 26.49 ? C8M FMN 1001 A 1 HETATM 28 C C8M FMN . C . B 2 3.337 -2.119 8.582 0.5 41.13 ? C8M FMN 1001 A 1 HETATM 29 C C9 FMN . A . B 2 4.687 -1.22 10.105 0.5 26.61 ? C9 FMN 1001 A 1 HETATM 30 C C9 FMN . C . B 2 4.596 -0.746 10.266 0.5 41.1 ? C9 FMN 1001 A 1 HETATM 31 C C9A FMN . A . B 2 5.349 -0.879 11.274 0.5 26.54 ? C9A FMN 1001 A 1 HETATM 32 C C9A FMN . C . B 2 5.093 -0.543 11.547 0.5 41.03 ? C9A FMN 1001 A 1 HETATM 33 N N10 FMN . A . B 2 6.183 0.254 11.311 0.5 26.68 ? N10 FMN 1001 A 1 HETATM 34 N N10 FMN . C . B 2 5.814 0.636 11.841 0.5 41.28 ? N10 FMN 1001 A 1 HETATM 35 C C10 FMN . A . B 2 6.84 0.555 12.519 0.5 26.63 ? C10 FMN 1001 A 1 HETATM 36 C C10 FMN . C . B 2 6.338 0.815 13.13 0.5 41.1 ? C10 FMN 1001 A 1 HETATM 37 C C1' FMN . A . B 2 6.376 1.066 10.107 0.5 26.94 ? C1' FMN 1001 A 1 HETATM 38 C C1' FMN . C . B 2 6.1 1.66 10.831 0.5 41.73 ? C1' FMN 1001 A 1 HETATM 39 C C2' FMN . A . B 2 5.711 2.434 10.177 0.5 27.01 ? C2' FMN 1001 A 1 HETATM 40 C C2' FMN . C . B 2 4.876 2.306 10.201 0.5 41.74 ? C2' FMN 1001 A 1 HETATM 41 O O2' FMN . A . B 2 4.353 2.309 10.612 0.5 27.55 ? O2' FMN 1001 A 1 HETATM 42 O O2' FMN . C . B 2 3.746 1.422 10.211 0.5 41.7 ? O2' FMN 1001 A 1 HETATM 43 C C3' FMN . A . B 2 5.765 3.058 8.791 0.5 27.16 ? C3' FMN 1001 A 1 HETATM 44 C C3' FMN . C . B 2 5.228 2.714 8.774 0.5 41.72 ? C3' FMN 1001 A 1 HETATM 45 O O3' FMN . A . B 2 5.537 2.023 7.829 0.5 26.6 ? O3' FMN 1001 A 1 HETATM 46 O O3' FMN . C . B 2 5.158 1.568 7.92 0.5 41.14 ? O3' FMN 1001 A 1 HETATM 47 C C4' FMN . A . B 2 7.12 3.711 8.517 0.5 27.68 ? C4' FMN 1001 A 1 HETATM 48 C C4' FMN . C . B 2 6.637 3.298 8.695 0.5 42.49 ? C4' FMN 1001 A 1 HETATM 49 O O4' FMN . A . B 2 7.231 4.937 9.254 0.5 27.51 ? O4' FMN 1001 A 1 HETATM 50 O O4' FMN . C . B 2 6.764 4.408 9.594 0.5 42.46 ? O4' FMN 1001 A 1 HETATM 51 C C5' FMN . A . B 2 7.336 3.975 7.024 0.5 28.01 ? C5' FMN 1001 A 1 HETATM 52 C C5' FMN . C . B 2 6.986 3.74 7.274 0.5 42.86 ? C5' FMN 1001 A 1 HETATM 53 O O5' FMN . A . B 2 6.138 4.422 6.393 0.5 28.54 ? O5' FMN 1001 A 1 HETATM 54 O O5' FMN . C . B 2 5.967 4.585 6.74 0.5 43.22 ? O5' FMN 1001 A 1 HETATM 55 P P FMN . A . B 2 5.832 5.995 6.238 0.5 29.62 ? P FMN 1001 A 1 HETATM 56 P P FMN . C . B 2 6.085 6.189 6.844 0.5 43.77 ? P FMN 1001 A 1 HETATM 57 O O1P FMN . A . B 2 4.465 6.048 5.597 0.5 29.31 ? O1P FMN 1001 A 1 HETATM 58 O O1P FMN . C . B 2 4.791 6.699 6.251 0.5 43.45 ? O1P FMN 1001 A 1 HETATM 59 O O2P FMN . A . B 2 5.876 6.514 7.656 0.5 29.02 ? O2P FMN 1001 A 1 HETATM 60 O O2P FMN . C . B 2 6.225 6.449 8.324 0.5 43.58 ? O2P FMN 1001 A 1 HETATM 61 O O3P FMN . A . B 2 6.941 6.506 5.349 0.5 29.29 ? O3P FMN 1001 A 1 HETATM 62 O O3P FMN . C . B 2 7.311 6.519 6.026 0.5 43.79 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 62 #