data_6QQR # _model_server_result.job_id 9GV3e-j5ade90NmLrXX8Tw _model_server_result.datetime_utc '2025-01-22 19:04:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6QQR # _exptl.entry_id 6QQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.966 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1~{H}-indol-5-ylboronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQR _cell.length_a 73.78 _cell.length_b 78.711 _cell.length_c 86.357 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H8 B N O2' _chem_comp.formula_weight 160.966 _chem_comp.id JDN _chem_comp.mon_nstd_flag . _chem_comp.name '1~{H}-indol-5-ylboronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 B02 JDN sing 173 n n O01 B02 JDN sing 174 n n B02 C04 JDN sing 175 n n C04 C09 JDN doub 176 n y C04 C05 JDN sing 177 n y C09 C08 JDN sing 178 n y C05 C06 JDN doub 179 n y C08 C07 JDN doub 180 n y C06 C07 JDN sing 181 n y C06 C12 JDN sing 182 n y C07 N10 JDN sing 183 n y C12 C11 JDN doub 184 n y N10 C11 JDN sing 185 n y O01 H1 JDN sing 186 n n O03 H2 JDN sing 187 n n C05 H3 JDN sing 188 n n C08 H4 JDN sing 189 n n C09 H5 JDN sing 190 n n N10 H6 JDN sing 191 n n C11 H7 JDN sing 192 n n C12 H8 JDN sing 193 n n # _atom_sites.entry_id 6QQR _atom_sites.fract_transf_matrix[1][1] 0.013554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JDN B 1 301 1 JDN LIG . D 3 HOH A 1 301 139 HOH HOH . D 3 HOH A 2 302 200 HOH HOH . D 3 HOH A 3 303 43 HOH HOH . D 3 HOH A 4 304 6 HOH HOH . D 3 HOH A 5 305 215 HOH HOH . D 3 HOH A 6 306 262 HOH HOH . D 3 HOH A 7 307 178 HOH HOH . D 3 HOH A 8 308 58 HOH HOH . D 3 HOH A 9 309 51 HOH HOH . D 3 HOH A 10 310 86 HOH HOH . D 3 HOH A 11 311 14 HOH HOH . D 3 HOH A 12 312 144 HOH HOH . D 3 HOH A 13 313 66 HOH HOH . D 3 HOH A 14 314 281 HOH HOH . D 3 HOH A 15 315 59 HOH HOH . D 3 HOH A 16 316 74 HOH HOH . D 3 HOH A 17 317 175 HOH HOH . D 3 HOH A 18 318 195 HOH HOH . D 3 HOH A 19 319 113 HOH HOH . D 3 HOH A 20 320 61 HOH HOH . D 3 HOH A 21 321 106 HOH HOH . D 3 HOH A 22 322 143 HOH HOH . D 3 HOH A 23 323 226 HOH HOH . D 3 HOH A 24 324 127 HOH HOH . D 3 HOH A 25 325 65 HOH HOH . D 3 HOH A 26 326 7 HOH HOH . D 3 HOH A 27 327 259 HOH HOH . D 3 HOH A 28 328 216 HOH HOH . D 3 HOH A 29 329 112 HOH HOH . D 3 HOH A 30 330 8 HOH HOH . D 3 HOH A 31 331 77 HOH HOH . D 3 HOH A 32 332 94 HOH HOH . D 3 HOH A 33 333 76 HOH HOH . D 3 HOH A 34 334 40 HOH HOH . D 3 HOH A 35 335 260 HOH HOH . D 3 HOH A 36 336 132 HOH HOH . D 3 HOH A 37 337 278 HOH HOH . D 3 HOH A 38 338 41 HOH HOH . D 3 HOH A 39 339 67 HOH HOH . D 3 HOH A 40 340 12 HOH HOH . D 3 HOH A 41 341 235 HOH HOH . D 3 HOH A 42 342 119 HOH HOH . D 3 HOH A 43 343 293 HOH HOH . D 3 HOH A 44 344 231 HOH HOH . D 3 HOH A 45 345 211 HOH HOH . D 3 HOH A 46 346 93 HOH HOH . D 3 HOH A 47 347 57 HOH HOH . D 3 HOH A 48 348 10 HOH HOH . D 3 HOH A 49 349 56 HOH HOH . D 3 HOH A 50 350 241 HOH HOH . D 3 HOH A 51 351 179 HOH HOH . D 3 HOH A 52 352 204 HOH HOH . D 3 HOH A 53 353 16 HOH HOH . D 3 HOH A 54 354 28 HOH HOH . D 3 HOH A 55 355 3 HOH HOH . D 3 HOH A 56 356 25 HOH HOH . D 3 HOH A 57 357 277 HOH HOH . D 3 HOH A 58 358 214 HOH HOH . D 3 HOH A 59 359 2 HOH HOH . D 3 HOH A 60 360 263 HOH HOH . D 3 HOH A 61 361 24 HOH HOH . D 3 HOH A 62 362 53 HOH HOH . D 3 HOH A 63 363 208 HOH HOH . D 3 HOH A 64 364 165 HOH HOH . D 3 HOH A 65 365 145 HOH HOH . D 3 HOH A 66 366 15 HOH HOH . D 3 HOH A 67 367 60 HOH HOH . D 3 HOH A 68 368 4 HOH HOH . D 3 HOH A 69 369 22 HOH HOH . D 3 HOH A 70 370 272 HOH HOH . D 3 HOH A 71 371 137 HOH HOH . D 3 HOH A 72 372 69 HOH HOH . D 3 HOH A 73 373 256 HOH HOH . D 3 HOH A 74 374 44 HOH HOH . D 3 HOH A 75 375 251 HOH HOH . D 3 HOH A 76 376 258 HOH HOH . D 3 HOH A 77 377 90 HOH HOH . D 3 HOH A 78 378 27 HOH HOH . D 3 HOH A 79 379 228 HOH HOH . D 3 HOH A 80 380 33 HOH HOH . D 3 HOH A 81 381 210 HOH HOH . D 3 HOH A 82 382 64 HOH HOH . D 3 HOH A 83 383 207 HOH HOH . D 3 HOH A 84 384 42 HOH HOH . D 3 HOH A 85 385 35 HOH HOH . D 3 HOH A 86 386 131 HOH HOH . D 3 HOH A 87 387 70 HOH HOH . D 3 HOH A 88 388 99 HOH HOH . D 3 HOH A 89 389 63 HOH HOH . D 3 HOH A 90 390 32 HOH HOH . D 3 HOH A 91 391 92 HOH HOH . D 3 HOH A 92 392 164 HOH HOH . D 3 HOH A 93 393 39 HOH HOH . D 3 HOH A 94 394 50 HOH HOH . D 3 HOH A 95 395 239 HOH HOH . D 3 HOH A 96 396 52 HOH HOH . D 3 HOH A 97 397 96 HOH HOH . D 3 HOH A 98 398 83 HOH HOH . D 3 HOH A 99 399 116 HOH HOH . D 3 HOH A 100 400 107 HOH HOH . D 3 HOH A 101 401 202 HOH HOH . D 3 HOH A 102 402 254 HOH HOH . D 3 HOH A 103 403 267 HOH HOH . D 3 HOH A 104 404 180 HOH HOH . D 3 HOH A 105 405 257 HOH HOH . D 3 HOH A 106 406 157 HOH HOH . D 3 HOH A 107 407 151 HOH HOH . D 3 HOH A 108 408 109 HOH HOH . D 3 HOH A 109 409 156 HOH HOH . D 3 HOH A 110 410 62 HOH HOH . D 3 HOH A 111 411 234 HOH HOH . D 3 HOH A 112 412 169 HOH HOH . D 3 HOH A 113 413 105 HOH HOH . D 3 HOH A 114 414 274 HOH HOH . D 3 HOH A 115 415 97 HOH HOH . D 3 HOH A 116 416 290 HOH HOH . D 3 HOH A 117 417 223 HOH HOH . D 3 HOH A 118 418 288 HOH HOH . D 3 HOH A 119 419 240 HOH HOH . D 3 HOH A 120 420 124 HOH HOH . D 3 HOH A 121 421 162 HOH HOH . D 3 HOH A 122 422 221 HOH HOH . D 3 HOH A 123 423 55 HOH HOH . D 3 HOH A 124 424 279 HOH HOH . D 3 HOH A 125 425 197 HOH HOH . D 3 HOH A 126 426 284 HOH HOH . D 3 HOH A 127 427 140 HOH HOH . D 3 HOH A 128 428 153 HOH HOH . D 3 HOH A 129 429 81 HOH HOH . D 3 HOH A 130 430 80 HOH HOH . D 3 HOH A 131 431 213 HOH HOH . D 3 HOH A 132 432 287 HOH HOH . D 3 HOH A 133 433 253 HOH HOH . D 3 HOH A 134 434 271 HOH HOH . D 3 HOH A 135 435 103 HOH HOH . D 3 HOH A 136 436 135 HOH HOH . D 3 HOH A 137 437 249 HOH HOH . D 3 HOH A 138 438 247 HOH HOH . D 3 HOH A 139 439 227 HOH HOH . D 3 HOH A 140 440 209 HOH HOH . D 3 HOH A 141 441 243 HOH HOH . D 3 HOH A 142 442 142 HOH HOH . D 3 HOH A 143 443 244 HOH HOH . D 3 HOH A 144 444 282 HOH HOH . D 3 HOH A 145 445 224 HOH HOH . D 3 HOH A 146 446 194 HOH HOH . D 3 HOH A 147 447 230 HOH HOH . D 3 HOH A 148 448 275 HOH HOH . E 3 HOH B 1 401 79 HOH HOH . E 3 HOH B 2 402 163 HOH HOH . E 3 HOH B 3 403 190 HOH HOH . E 3 HOH B 4 404 54 HOH HOH . E 3 HOH B 5 405 229 HOH HOH . E 3 HOH B 6 406 91 HOH HOH . E 3 HOH B 7 407 37 HOH HOH . E 3 HOH B 8 408 111 HOH HOH . E 3 HOH B 9 409 125 HOH HOH . E 3 HOH B 10 410 108 HOH HOH . E 3 HOH B 11 411 23 HOH HOH . E 3 HOH B 12 412 148 HOH HOH . E 3 HOH B 13 413 118 HOH HOH . E 3 HOH B 14 414 128 HOH HOH . E 3 HOH B 15 415 100 HOH HOH . E 3 HOH B 16 416 248 HOH HOH . E 3 HOH B 17 417 147 HOH HOH . E 3 HOH B 18 418 186 HOH HOH . E 3 HOH B 19 419 269 HOH HOH . E 3 HOH B 20 420 75 HOH HOH . E 3 HOH B 21 421 170 HOH HOH . E 3 HOH B 22 422 177 HOH HOH . E 3 HOH B 23 423 117 HOH HOH . E 3 HOH B 24 424 36 HOH HOH . E 3 HOH B 25 425 73 HOH HOH . E 3 HOH B 26 426 19 HOH HOH . E 3 HOH B 27 427 291 HOH HOH . E 3 HOH B 28 428 85 HOH HOH . E 3 HOH B 29 429 138 HOH HOH . E 3 HOH B 30 430 9 HOH HOH . E 3 HOH B 31 431 11 HOH HOH . E 3 HOH B 32 432 176 HOH HOH . E 3 HOH B 33 433 123 HOH HOH . E 3 HOH B 34 434 21 HOH HOH . E 3 HOH B 35 435 265 HOH HOH . E 3 HOH B 36 436 89 HOH HOH . E 3 HOH B 37 437 219 HOH HOH . E 3 HOH B 38 438 245 HOH HOH . E 3 HOH B 39 439 167 HOH HOH . E 3 HOH B 40 440 82 HOH HOH . E 3 HOH B 41 441 31 HOH HOH . E 3 HOH B 42 442 206 HOH HOH . E 3 HOH B 43 443 34 HOH HOH . E 3 HOH B 44 444 141 HOH HOH . E 3 HOH B 45 445 88 HOH HOH . E 3 HOH B 46 446 155 HOH HOH . E 3 HOH B 47 447 276 HOH HOH . E 3 HOH B 48 448 292 HOH HOH . E 3 HOH B 49 449 133 HOH HOH . E 3 HOH B 50 450 13 HOH HOH . E 3 HOH B 51 451 285 HOH HOH . E 3 HOH B 52 452 136 HOH HOH . E 3 HOH B 53 453 101 HOH HOH . E 3 HOH B 54 454 158 HOH HOH . E 3 HOH B 55 455 47 HOH HOH . E 3 HOH B 56 456 71 HOH HOH . E 3 HOH B 57 457 218 HOH HOH . E 3 HOH B 58 458 152 HOH HOH . E 3 HOH B 59 459 203 HOH HOH . E 3 HOH B 60 460 98 HOH HOH . E 3 HOH B 61 461 270 HOH HOH . E 3 HOH B 62 462 5 HOH HOH . E 3 HOH B 63 463 87 HOH HOH . E 3 HOH B 64 464 192 HOH HOH . E 3 HOH B 65 465 225 HOH HOH . E 3 HOH B 66 466 232 HOH HOH . E 3 HOH B 67 467 20 HOH HOH . E 3 HOH B 68 468 29 HOH HOH . E 3 HOH B 69 469 49 HOH HOH . E 3 HOH B 70 470 18 HOH HOH . E 3 HOH B 71 471 159 HOH HOH . E 3 HOH B 72 472 17 HOH HOH . E 3 HOH B 73 473 182 HOH HOH . E 3 HOH B 74 474 268 HOH HOH . E 3 HOH B 75 475 233 HOH HOH . E 3 HOH B 76 476 1 HOH HOH . E 3 HOH B 77 477 115 HOH HOH . E 3 HOH B 78 478 48 HOH HOH . E 3 HOH B 79 479 150 HOH HOH . E 3 HOH B 80 480 185 HOH HOH . E 3 HOH B 81 481 184 HOH HOH . E 3 HOH B 82 482 30 HOH HOH . E 3 HOH B 83 483 187 HOH HOH . E 3 HOH B 84 484 26 HOH HOH . E 3 HOH B 85 485 72 HOH HOH . E 3 HOH B 86 486 126 HOH HOH . E 3 HOH B 87 487 181 HOH HOH . E 3 HOH B 88 488 122 HOH HOH . E 3 HOH B 89 489 102 HOH HOH . E 3 HOH B 90 490 193 HOH HOH . E 3 HOH B 91 491 168 HOH HOH . E 3 HOH B 92 492 38 HOH HOH . E 3 HOH B 93 493 161 HOH HOH . E 3 HOH B 94 494 110 HOH HOH . E 3 HOH B 95 495 172 HOH HOH . E 3 HOH B 96 496 78 HOH HOH . E 3 HOH B 97 497 129 HOH HOH . E 3 HOH B 98 498 146 HOH HOH . E 3 HOH B 99 499 294 HOH HOH . E 3 HOH B 100 500 45 HOH HOH . E 3 HOH B 101 501 114 HOH HOH . E 3 HOH B 102 502 130 HOH HOH . E 3 HOH B 103 503 220 HOH HOH . E 3 HOH B 104 504 237 HOH HOH . E 3 HOH B 105 505 191 HOH HOH . E 3 HOH B 106 506 149 HOH HOH . E 3 HOH B 107 507 121 HOH HOH . E 3 HOH B 108 508 46 HOH HOH . E 3 HOH B 109 509 120 HOH HOH . E 3 HOH B 110 510 246 HOH HOH . E 3 HOH B 111 511 198 HOH HOH . E 3 HOH B 112 512 212 HOH HOH . E 3 HOH B 113 513 68 HOH HOH . E 3 HOH B 114 514 188 HOH HOH . E 3 HOH B 115 515 173 HOH HOH . E 3 HOH B 116 516 199 HOH HOH . E 3 HOH B 117 517 238 HOH HOH . E 3 HOH B 118 518 196 HOH HOH . E 3 HOH B 119 519 160 HOH HOH . E 3 HOH B 120 520 283 HOH HOH . E 3 HOH B 121 521 166 HOH HOH . E 3 HOH B 122 522 222 HOH HOH . E 3 HOH B 123 523 183 HOH HOH . E 3 HOH B 124 524 174 HOH HOH . E 3 HOH B 125 525 242 HOH HOH . E 3 HOH B 126 526 189 HOH HOH . E 3 HOH B 127 527 95 HOH HOH . E 3 HOH B 128 528 250 HOH HOH . E 3 HOH B 129 529 201 HOH HOH . E 3 HOH B 130 530 104 HOH HOH . E 3 HOH B 131 531 252 HOH HOH . E 3 HOH B 132 532 171 HOH HOH . E 3 HOH B 133 533 261 HOH HOH . E 3 HOH B 134 534 134 HOH HOH . E 3 HOH B 135 535 273 HOH HOH . E 3 HOH B 136 536 286 HOH HOH . E 3 HOH B 137 537 84 HOH HOH . E 3 HOH B 138 538 264 HOH HOH . E 3 HOH B 139 539 205 HOH HOH . E 3 HOH B 140 540 280 HOH HOH . E 3 HOH B 141 541 289 HOH HOH . E 3 HOH B 142 542 236 HOH HOH . E 3 HOH B 143 543 217 HOH HOH . E 3 HOH B 144 544 154 HOH HOH . E 3 HOH B 145 545 266 HOH HOH . E 3 HOH B 146 546 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 JDN . . . C 2 -13.219 -8.334 23.918 1 31.26 ? O01 JDN 301 B 1 HETATM 2 B B02 JDN . . . C 2 -13.073 -9.58 24.583 1 30.86 ? B02 JDN 301 B 1 HETATM 3 O O03 JDN . . . C 2 -12.355 -10.599 23.916 1 28.36 ? O03 JDN 301 B 1 HETATM 4 C C04 JDN . . . C 2 -12.848 -9.499 26.193 1 31.77 ? C04 JDN 301 B 1 HETATM 5 C C05 JDN . . . C 2 -13.17 -8.328 26.883 1 32.24 ? C05 JDN 301 B 1 HETATM 6 C C06 JDN . . . C 2 -12.943 -8.278 28.282 1 35.75 ? C06 JDN 301 B 1 HETATM 7 C C07 JDN . . . C 2 -12.407 -9.37 28.934 1 27.97 ? C07 JDN 301 B 1 HETATM 8 C C08 JDN . . . C 2 -12.074 -10.559 28.213 1 30.17 ? C08 JDN 301 B 1 HETATM 9 C C09 JDN . . . C 2 -12.295 -10.608 26.855 1 29.7 ? C09 JDN 301 B 1 HETATM 10 N N10 JDN . . . C 2 -12.283 -9.072 30.268 1 32.63 ? N10 JDN 301 B 1 HETATM 11 C C11 JDN . . . C 2 -12.72 -7.838 30.512 1 37.12 ? C11 JDN 301 B 1 HETATM 12 C C12 JDN . . . C 2 -13.145 -7.286 29.304 1 37.93 ? C12 JDN 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #