data_6QR8
#
_model_server_result.job_id            0-o-rYS5ya2OxhBwg1F8hw 
_model_server_result.datetime_utc      '2024-11-07 23:41:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6QR8 
#
_exptl.entry_id    6QR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.529 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-azanyl-3-[1-[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QR8 
_cell.length_a            74.85 
_cell.length_b            76.329 
_cell.length_c            86.381 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H27 N7' 
_chem_comp.formula_weight    425.529 
_chem_comp.id                JDH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-azanyl-3-[1-[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C26 JDH sing 173 n n 
C27 N21 JDH sing 174 n n 
C25 N24 JDH sing 175 n n 
C26 N24 JDH sing 176 n n 
N24 C23 JDH sing 177 n n 
C20 N21 JDH sing 178 n n 
C20 C19 JDH sing 179 n n 
N21 C22 JDH sing 180 n n 
C22 C23 JDH sing 181 n n 
C18 C19 JDH doub 182 n y 
C18 C17 JDH sing 183 n y 
C19 C28 JDH sing 184 n y 
C17 C16 JDH doub 185 n y 
C28 C29 JDH doub 186 n y 
C16 C29 JDH sing 187 n y 
C16 C15 JDH sing 188 n n 
C13 C12 JDH doub 189 n y 
C13 N14 JDH sing 190 n y 
C12 C09 JDH sing 191 n y 
N14 C15 JDH sing 192 n n 
N14 C08 JDH sing 193 n y 
C09 C08 JDH doub 194 n y 
C09 C10 JDH sing 195 n y 
C08 C07 JDH sing 196 n y 
C10 C11 JDH doub 197 n y 
C07 C06 JDH doub 198 n y 
C11 C06 JDH sing 199 n y 
C06 C05 JDH sing 200 n n 
N04 C05 JDH doub 201 n y 
N04 N03 JDH sing 202 n y 
C05 C30 JDH sing 203 n y 
C30 C31 JDH sing 204 n n 
C30 C02 JDH doub 205 n y 
N03 C02 JDH sing 206 n y 
C31 N32 JDH trip 207 n n 
C02 N01 JDH sing 208 n n 
C10 H1 JDH sing 209 n n 
C13 H2 JDH sing 210 n n 
C15 H3 JDH sing 211 n n 
C15 H4 JDH sing 212 n n 
C17 H5 JDH sing 213 n n 
C20 H6 JDH sing 214 n n 
C20 H7 JDH sing 215 n n 
C22 H8 JDH sing 216 n n 
C22 H9 JDH sing 217 n n 
C26 H10 JDH sing 218 n n 
C26 H11 JDH sing 219 n n 
C28 H12 JDH sing 220 n n 
N01 H13 JDH sing 221 n n 
N01 H14 JDH sing 222 n n 
N03 H15 JDH sing 223 n n 
C07 H16 JDH sing 224 n n 
C11 H17 JDH sing 225 n n 
C12 H18 JDH sing 226 n n 
C18 H19 JDH sing 227 n n 
C23 H21 JDH sing 228 n n 
C23 H22 JDH sing 229 n n 
C25 H24 JDH sing 230 n n 
C25 H25 JDH sing 231 n n 
C25 H26 JDH sing 232 n n 
C27 H27 JDH sing 233 n n 
C27 H28 JDH sing 234 n n 
C29 H29 JDH sing 235 n n 
#
_atom_sites.entry_id                     6QR8 
_atom_sites.fract_transf_matrix[1][1]    0.01336 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011577 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 JDH A 1 301 1 JDH LIG . 
D 2 JDH B 1 301 2 JDH LIG . 
E 3 HOH A 1 401 72 HOH HOH . 
E 3 HOH A 2 402 50 HOH HOH . 
E 3 HOH A 3 403 34 HOH HOH . 
E 3 HOH A 4 404 67 HOH HOH . 
E 3 HOH A 5 405 55 HOH HOH . 
E 3 HOH A 6 406 12 HOH HOH . 
E 3 HOH A 7 407 7 HOH HOH . 
E 3 HOH A 8 408 70 HOH HOH . 
E 3 HOH A 9 409 19 HOH HOH . 
E 3 HOH A 10 410 88 HOH HOH . 
E 3 HOH A 11 411 27 HOH HOH . 
E 3 HOH A 12 412 60 HOH HOH . 
E 3 HOH A 13 413 82 HOH HOH . 
E 3 HOH A 14 414 8 HOH HOH . 
E 3 HOH A 15 415 21 HOH HOH . 
E 3 HOH A 16 416 95 HOH HOH . 
E 3 HOH A 17 417 42 HOH HOH . 
E 3 HOH A 18 418 45 HOH HOH . 
E 3 HOH A 19 419 92 HOH HOH . 
E 3 HOH A 20 420 5 HOH HOH . 
E 3 HOH A 21 421 91 HOH HOH . 
E 3 HOH A 22 422 11 HOH HOH . 
E 3 HOH A 23 423 25 HOH HOH . 
E 3 HOH A 24 424 9 HOH HOH . 
E 3 HOH A 25 425 6 HOH HOH . 
E 3 HOH A 26 426 48 HOH HOH . 
E 3 HOH A 27 427 28 HOH HOH . 
E 3 HOH A 28 428 16 HOH HOH . 
E 3 HOH A 29 429 40 HOH HOH . 
E 3 HOH A 30 430 18 HOH HOH . 
E 3 HOH A 31 431 49 HOH HOH . 
E 3 HOH A 32 432 2 HOH HOH . 
E 3 HOH A 33 433 64 HOH HOH . 
E 3 HOH A 34 434 52 HOH HOH . 
E 3 HOH A 35 435 13 HOH HOH . 
E 3 HOH A 36 436 44 HOH HOH . 
E 3 HOH A 37 437 15 HOH HOH . 
E 3 HOH A 38 438 61 HOH HOH . 
E 3 HOH A 39 439 93 HOH HOH . 
E 3 HOH A 40 440 3 HOH HOH . 
E 3 HOH A 41 441 96 HOH HOH . 
E 3 HOH A 42 442 69 HOH HOH . 
E 3 HOH A 43 443 84 HOH HOH . 
E 3 HOH A 44 444 56 HOH HOH . 
E 3 HOH A 45 445 78 HOH HOH . 
E 3 HOH A 46 446 97 HOH HOH . 
E 3 HOH A 47 447 79 HOH HOH . 
E 3 HOH A 48 448 80 HOH HOH . 
E 3 HOH A 49 449 66 HOH HOH . 
E 3 HOH A 50 450 81 HOH HOH . 
E 3 HOH A 51 451 90 HOH HOH . 
E 3 HOH A 52 452 38 HOH HOH . 
E 3 HOH A 53 453 41 HOH HOH . 
E 3 HOH A 54 454 51 HOH HOH . 
E 3 HOH A 55 455 46 HOH HOH . 
E 3 HOH A 56 456 86 HOH HOH . 
F 3 HOH B 1 401 39 HOH HOH . 
F 3 HOH B 2 402 68 HOH HOH . 
F 3 HOH B 3 403 1 HOH HOH . 
F 3 HOH B 4 404 54 HOH HOH . 
F 3 HOH B 5 405 20 HOH HOH . 
F 3 HOH B 6 406 24 HOH HOH . 
F 3 HOH B 7 407 37 HOH HOH . 
F 3 HOH B 8 408 87 HOH HOH . 
F 3 HOH B 9 409 4 HOH HOH . 
F 3 HOH B 10 410 71 HOH HOH . 
F 3 HOH B 11 411 23 HOH HOH . 
F 3 HOH B 12 412 32 HOH HOH . 
F 3 HOH B 13 413 57 HOH HOH . 
F 3 HOH B 14 414 85 HOH HOH . 
F 3 HOH B 15 415 76 HOH HOH . 
F 3 HOH B 16 416 63 HOH HOH . 
F 3 HOH B 17 417 29 HOH HOH . 
F 3 HOH B 18 418 10 HOH HOH . 
F 3 HOH B 19 419 83 HOH HOH . 
F 3 HOH B 20 420 59 HOH HOH . 
F 3 HOH B 21 421 22 HOH HOH . 
F 3 HOH B 22 422 30 HOH HOH . 
F 3 HOH B 23 423 73 HOH HOH . 
F 3 HOH B 24 424 31 HOH HOH . 
F 3 HOH B 25 425 14 HOH HOH . 
F 3 HOH B 26 426 43 HOH HOH . 
F 3 HOH B 27 427 36 HOH HOH . 
F 3 HOH B 28 428 35 HOH HOH . 
F 3 HOH B 29 429 58 HOH HOH . 
F 3 HOH B 30 430 62 HOH HOH . 
F 3 HOH B 31 431 26 HOH HOH . 
F 3 HOH B 32 432 94 HOH HOH . 
F 3 HOH B 33 433 65 HOH HOH . 
F 3 HOH B 34 434 75 HOH HOH . 
F 3 HOH B 35 435 74 HOH HOH . 
F 3 HOH B 36 436 89 HOH HOH . 
F 3 HOH B 37 437 47 HOH HOH . 
F 3 HOH B 38 438 77 HOH HOH . 
F 3 HOH B 39 439 33 HOH HOH . 
F 3 HOH B 40 440 17 HOH HOH . 
F 3 HOH B 41 441 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 JDH . . . D 2 -12.409 -11.05 28.639 1 30.55 ? C10 JDH 301 B 1 
HETATM 2 C C13 JDH . . . D 2 -13.131 -8.353 31.042 1 39.25 ? C13 JDH 301 B 1 
HETATM 3 C C15 JDH . . . D 2 -13.974 -6.528 29.574 1 35.84 ? C15 JDH 301 B 1 
HETATM 4 C C17 JDH . . . D 2 -11.575 -5.74 29.46 1 41.05 ? C17 JDH 301 B 1 
HETATM 5 C C20 JDH . . . D 2 -9.833 -2.568 28.079 1 61.48 ? C20 JDH 301 B 1 
HETATM 6 C C22 JDH . . . D 2 -10.141 -2.673 25.936 1 73.35 ? C22 JDH 301 B 1 
HETATM 7 C C26 JDH . . . D 2 -8.711 -0.387 25.571 1 80.41 ? C26 JDH 301 B 1 
HETATM 8 C C28 JDH . . . D 2 -12.342 -3.375 28.159 1 55.3 ? C28 JDH 301 B 1 
HETATM 9 N N01 JDH . . . D 2 -12.912 -10.484 21.568 1 31.63 ? N01 JDH 301 B 1 
HETATM 10 C C02 JDH . . . D 2 -13.117 -9.886 22.869 1 29.8 ? C02 JDH 301 B 1 
HETATM 11 N N03 JDH . . . D 2 -13.555 -8.629 23.14 1 32.4 ? N03 JDH 301 B 1 
HETATM 12 N N04 JDH . . . D 2 -13.618 -8.499 24.502 1 31.12 ? N04 JDH 301 B 1 
HETATM 13 C C05 JDH . . . D 2 -13.254 -9.645 25.109 1 29.88 ? C05 JDH 301 B 1 
HETATM 14 C C06 JDH . . . D 2 -13.117 -9.803 26.649 1 32.37 ? C06 JDH 301 B 1 
HETATM 15 C C07 JDH . . . D 2 -13.397 -8.696 27.451 1 30.38 ? C07 JDH 301 B 1 
HETATM 16 C C08 JDH . . . D 2 -13.212 -8.779 28.863 1 36.07 ? C08 JDH 301 B 1 
HETATM 17 C C09 JDH . . . D 2 -12.718 -9.943 29.452 1 33.64 ? C09 JDH 301 B 1 
HETATM 18 C C11 JDH . . . D 2 -12.596 -10.976 27.239 1 33.57 ? C11 JDH 301 B 1 
HETATM 19 C C12 JDH . . . D 2 -12.67 -9.668 30.865 1 36.68 ? C12 JDH 301 B 1 
HETATM 20 N N14 JDH . . . D 2 -13.45 -7.85 29.837 1 36.09 ? N14 JDH 301 B 1 
HETATM 21 C C16 JDH . . . D 2 -12.925 -5.514 29.169 1 38.36 ? C16 JDH 301 B 1 
HETATM 22 C C18 JDH . . . D 2 -10.598 -4.787 29.105 1 44.39 ? C18 JDH 301 B 1 
HETATM 23 C C19 JDH . . . D 2 -10.971 -3.609 28.452 1 57.63 ? C19 JDH 301 B 1 
HETATM 24 N N21 JDH . . . D 2 -10.079 -1.85 27.012 1 74.37 ? N21 JDH 301 B 1 
HETATM 25 C C23 JDH . . . D 2 -9.83 -2.023 24.599 1 75.47 ? C23 JDH 301 B 1 
HETATM 26 N N24 JDH . . . D 2 -8.641 -1.379 24.664 1 83.56 ? N24 JDH 301 B 1 
HETATM 27 C C25 JDH . . . D 2 -8.305 -0.935 23.504 1 84.28 ? C25 JDH 301 B 1 
HETATM 28 C C27 JDH . . . D 2 -9.109 -0.888 26.953 1 74.83 ? C27 JDH 301 B 1 
HETATM 29 C C29 JDH . . . D 2 -13.316 -4.334 28.517 1 46.99 ? C29 JDH 301 B 1 
HETATM 30 C C30 JDH . . . D 2 -12.901 -10.53 24.11 1 32.39 ? C30 JDH 301 B 1 
HETATM 31 C C31 JDH . . . D 2 -12.42 -11.94 24.238 1 30.93 ? C31 JDH 301 B 1 
HETATM 32 N N32 JDH . . . D 2 -12.072 -12.991 24.33 1 30.41 ? N32 JDH 301 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#