data_6QRB # _model_server_result.job_id HKavtQn89gDGF56eQPGW_A _model_server_result.datetime_utc '2025-01-22 18:20:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6QRB # _exptl.entry_id 6QRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanyl-3-[1-[[(3~{R})-1-(phenylmethyl)piperidin-3-yl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QRB _cell.length_a 75.461 _cell.length_b 77.752 _cell.length_c 86.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H26 N6' _chem_comp.formula_weight 410.514 _chem_comp.id JEQ _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanyl-3-[1-[[(3~{R})-1-(phenylmethyl)piperidin-3-yl]methyl]indol-6-yl]-1~{H}-pyrazole-4-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 JEQ doub 173 n y C24 C23 JEQ sing 174 n y C25 C20 JEQ sing 175 n y C23 C22 JEQ doub 176 n y C20 C19 JEQ sing 177 n n C20 C21 JEQ doub 178 n y C22 C21 JEQ sing 179 n y C19 N18 JEQ sing 180 n n N18 C26 JEQ sing 181 n n N18 C17 JEQ sing 182 n n C26 C27 JEQ sing 183 n n C27 C28 JEQ sing 184 n n C17 C16 JEQ sing 185 n n C16 C28 JEQ sing 186 n n C16 C15 JEQ sing 187 n n C12 C13 JEQ doub 188 n y C12 C09 JEQ sing 189 n y C13 N14 JEQ sing 190 n y N14 C15 JEQ sing 191 n n N14 C08 JEQ sing 192 n y C09 C10 JEQ doub 193 n y C09 C08 JEQ sing 194 n y C10 C11 JEQ sing 195 n y C08 C07 JEQ doub 196 n y C11 C06 JEQ doub 197 n y C07 C06 JEQ sing 198 n y C06 C05 JEQ sing 199 n n C05 N04 JEQ doub 200 n y C05 C29 JEQ sing 201 n y N04 N03 JEQ sing 202 n y C29 C30 JEQ sing 203 n n C29 C02 JEQ doub 204 n y C30 N31 JEQ trip 205 n n N03 C02 JEQ sing 206 n y C02 N01 JEQ sing 207 n n C10 H1 JEQ sing 208 n n C13 H2 JEQ sing 209 n n C15 H3 JEQ sing 210 n n C15 H4 JEQ sing 211 n n C17 H5 JEQ sing 212 n n C17 H6 JEQ sing 213 n n C21 H7 JEQ sing 214 n n C22 H8 JEQ sing 215 n n C24 H9 JEQ sing 216 n n C26 H10 JEQ sing 217 n n C26 H11 JEQ sing 218 n n C28 H12 JEQ sing 219 n n C28 H13 JEQ sing 220 n n N01 H14 JEQ sing 221 n n N01 H15 JEQ sing 222 n n N03 H16 JEQ sing 223 n n C07 H17 JEQ sing 224 n n C11 H18 JEQ sing 225 n n C12 H19 JEQ sing 226 n n C16 H20 JEQ sing 227 n n C19 H22 JEQ sing 228 n n C19 H23 JEQ sing 229 n n C23 H24 JEQ sing 230 n n C25 H25 JEQ sing 231 n n C27 H26 JEQ sing 232 n n C27 H27 JEQ sing 233 n n # _atom_sites.entry_id 6QRB _atom_sites.fract_transf_matrix[1][1] 0.013252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JEQ A 1 301 4 JEQ LIG . D 2 JEQ B 1 301 1 JEQ LIG . E 3 HOH A 1 401 57 HOH HOH . E 3 HOH A 2 402 68 HOH HOH . E 3 HOH A 3 403 56 HOH HOH . E 3 HOH A 4 404 217 HOH HOH . E 3 HOH A 5 405 51 HOH HOH . E 3 HOH A 6 406 124 HOH HOH . E 3 HOH A 7 407 175 HOH HOH . E 3 HOH A 8 408 203 HOH HOH . E 3 HOH A 9 409 77 HOH HOH . E 3 HOH A 10 410 7 HOH HOH . E 3 HOH A 11 411 126 HOH HOH . E 3 HOH A 12 412 6 HOH HOH . E 3 HOH A 13 413 95 HOH HOH . E 3 HOH A 14 414 79 HOH HOH . E 3 HOH A 15 415 197 HOH HOH . E 3 HOH A 16 416 151 HOH HOH . E 3 HOH A 17 417 48 HOH HOH . E 3 HOH A 18 418 14 HOH HOH . E 3 HOH A 19 419 161 HOH HOH . E 3 HOH A 20 420 46 HOH HOH . E 3 HOH A 21 421 66 HOH HOH . E 3 HOH A 22 422 3 HOH HOH . E 3 HOH A 23 423 94 HOH HOH . E 3 HOH A 24 424 107 HOH HOH . E 3 HOH A 25 425 129 HOH HOH . E 3 HOH A 26 426 108 HOH HOH . E 3 HOH A 27 427 55 HOH HOH . E 3 HOH A 28 428 20 HOH HOH . E 3 HOH A 29 429 91 HOH HOH . E 3 HOH A 30 430 150 HOH HOH . E 3 HOH A 31 431 93 HOH HOH . E 3 HOH A 32 432 132 HOH HOH . E 3 HOH A 33 433 191 HOH HOH . E 3 HOH A 34 434 122 HOH HOH . E 3 HOH A 35 435 49 HOH HOH . E 3 HOH A 36 436 59 HOH HOH . E 3 HOH A 37 437 9 HOH HOH . E 3 HOH A 38 438 32 HOH HOH . E 3 HOH A 39 439 119 HOH HOH . E 3 HOH A 40 440 36 HOH HOH . E 3 HOH A 41 441 4 HOH HOH . E 3 HOH A 42 442 50 HOH HOH . E 3 HOH A 43 443 82 HOH HOH . E 3 HOH A 44 444 11 HOH HOH . E 3 HOH A 45 445 138 HOH HOH . E 3 HOH A 46 446 120 HOH HOH . E 3 HOH A 47 447 12 HOH HOH . E 3 HOH A 48 448 165 HOH HOH . E 3 HOH A 49 449 8 HOH HOH . E 3 HOH A 50 450 114 HOH HOH . E 3 HOH A 51 451 19 HOH HOH . E 3 HOH A 52 452 155 HOH HOH . E 3 HOH A 53 453 97 HOH HOH . E 3 HOH A 54 454 52 HOH HOH . E 3 HOH A 55 455 118 HOH HOH . E 3 HOH A 56 456 160 HOH HOH . E 3 HOH A 57 457 142 HOH HOH . E 3 HOH A 58 458 21 HOH HOH . E 3 HOH A 59 459 44 HOH HOH . E 3 HOH A 60 460 86 HOH HOH . E 3 HOH A 61 461 98 HOH HOH . E 3 HOH A 62 462 29 HOH HOH . E 3 HOH A 63 463 16 HOH HOH . E 3 HOH A 64 464 42 HOH HOH . E 3 HOH A 65 465 147 HOH HOH . E 3 HOH A 66 466 71 HOH HOH . E 3 HOH A 67 467 121 HOH HOH . E 3 HOH A 68 468 131 HOH HOH . E 3 HOH A 69 469 27 HOH HOH . E 3 HOH A 70 470 134 HOH HOH . E 3 HOH A 71 471 43 HOH HOH . E 3 HOH A 72 472 67 HOH HOH . E 3 HOH A 73 473 104 HOH HOH . E 3 HOH A 74 474 149 HOH HOH . E 3 HOH A 75 475 96 HOH HOH . E 3 HOH A 76 476 47 HOH HOH . E 3 HOH A 77 477 83 HOH HOH . E 3 HOH A 78 478 58 HOH HOH . E 3 HOH A 79 479 123 HOH HOH . E 3 HOH A 80 480 37 HOH HOH . E 3 HOH A 81 481 113 HOH HOH . E 3 HOH A 82 482 45 HOH HOH . E 3 HOH A 83 483 125 HOH HOH . E 3 HOH A 84 484 152 HOH HOH . E 3 HOH A 85 485 102 HOH HOH . E 3 HOH A 86 486 74 HOH HOH . E 3 HOH A 87 487 169 HOH HOH . E 3 HOH A 88 488 172 HOH HOH . E 3 HOH A 89 489 26 HOH HOH . E 3 HOH A 90 490 141 HOH HOH . E 3 HOH A 91 491 168 HOH HOH . E 3 HOH A 92 492 186 HOH HOH . E 3 HOH A 93 493 171 HOH HOH . E 3 HOH A 94 494 202 HOH HOH . E 3 HOH A 95 495 189 HOH HOH . E 3 HOH A 96 496 130 HOH HOH . E 3 HOH A 97 497 162 HOH HOH . E 3 HOH A 98 498 109 HOH HOH . E 3 HOH A 99 499 206 HOH HOH . E 3 HOH A 100 500 195 HOH HOH . E 3 HOH A 101 501 54 HOH HOH . E 3 HOH A 102 502 209 HOH HOH . E 3 HOH A 103 503 164 HOH HOH . E 3 HOH A 104 504 159 HOH HOH . E 3 HOH A 105 505 18 HOH HOH . E 3 HOH A 106 506 201 HOH HOH . E 3 HOH A 107 507 90 HOH HOH . E 3 HOH A 108 508 76 HOH HOH . E 3 HOH A 109 509 198 HOH HOH . E 3 HOH A 110 510 103 HOH HOH . E 3 HOH A 111 511 210 HOH HOH . E 3 HOH A 112 512 157 HOH HOH . E 3 HOH A 113 513 176 HOH HOH . E 3 HOH A 114 514 148 HOH HOH . E 3 HOH A 115 515 208 HOH HOH . E 3 HOH A 116 516 188 HOH HOH . E 3 HOH A 117 517 215 HOH HOH . E 3 HOH A 118 518 207 HOH HOH . E 3 HOH A 119 519 213 HOH HOH . F 3 HOH B 1 401 64 HOH HOH . F 3 HOH B 2 402 178 HOH HOH . F 3 HOH B 3 403 205 HOH HOH . F 3 HOH B 4 404 187 HOH HOH . F 3 HOH B 5 405 75 HOH HOH . F 3 HOH B 6 406 89 HOH HOH . F 3 HOH B 7 407 35 HOH HOH . F 3 HOH B 8 408 192 HOH HOH . F 3 HOH B 9 409 135 HOH HOH . F 3 HOH B 10 410 158 HOH HOH . F 3 HOH B 11 411 145 HOH HOH . F 3 HOH B 12 412 80 HOH HOH . F 3 HOH B 13 413 204 HOH HOH . F 3 HOH B 14 414 15 HOH HOH . F 3 HOH B 15 415 196 HOH HOH . F 3 HOH B 16 416 24 HOH HOH . F 3 HOH B 17 417 181 HOH HOH . F 3 HOH B 18 418 184 HOH HOH . F 3 HOH B 19 419 69 HOH HOH . F 3 HOH B 20 420 115 HOH HOH . F 3 HOH B 21 421 33 HOH HOH . F 3 HOH B 22 422 88 HOH HOH . F 3 HOH B 23 423 17 HOH HOH . F 3 HOH B 24 424 28 HOH HOH . F 3 HOH B 25 425 100 HOH HOH . F 3 HOH B 26 426 193 HOH HOH . F 3 HOH B 27 427 25 HOH HOH . F 3 HOH B 28 428 153 HOH HOH . F 3 HOH B 29 429 31 HOH HOH . F 3 HOH B 30 430 38 HOH HOH . F 3 HOH B 31 431 1 HOH HOH . F 3 HOH B 32 432 85 HOH HOH . F 3 HOH B 33 433 81 HOH HOH . F 3 HOH B 34 434 146 HOH HOH . F 3 HOH B 35 435 22 HOH HOH . F 3 HOH B 36 436 72 HOH HOH . F 3 HOH B 37 437 112 HOH HOH . F 3 HOH B 38 438 34 HOH HOH . F 3 HOH B 39 439 182 HOH HOH . F 3 HOH B 40 440 177 HOH HOH . F 3 HOH B 41 441 78 HOH HOH . F 3 HOH B 42 442 117 HOH HOH . F 3 HOH B 43 443 200 HOH HOH . F 3 HOH B 44 444 13 HOH HOH . F 3 HOH B 45 445 106 HOH HOH . F 3 HOH B 46 446 10 HOH HOH . F 3 HOH B 47 447 84 HOH HOH . F 3 HOH B 48 448 116 HOH HOH . F 3 HOH B 49 449 199 HOH HOH . F 3 HOH B 50 450 63 HOH HOH . F 3 HOH B 51 451 5 HOH HOH . F 3 HOH B 52 452 53 HOH HOH . F 3 HOH B 53 453 133 HOH HOH . F 3 HOH B 54 454 167 HOH HOH . F 3 HOH B 55 455 185 HOH HOH . F 3 HOH B 56 456 110 HOH HOH . F 3 HOH B 57 457 128 HOH HOH . F 3 HOH B 58 458 180 HOH HOH . F 3 HOH B 59 459 173 HOH HOH . F 3 HOH B 60 460 111 HOH HOH . F 3 HOH B 61 461 166 HOH HOH . F 3 HOH B 62 462 2 HOH HOH . F 3 HOH B 63 463 87 HOH HOH . F 3 HOH B 64 464 174 HOH HOH . F 3 HOH B 65 465 23 HOH HOH . F 3 HOH B 66 466 60 HOH HOH . F 3 HOH B 67 467 194 HOH HOH . F 3 HOH B 68 468 190 HOH HOH . F 3 HOH B 69 469 92 HOH HOH . F 3 HOH B 70 470 99 HOH HOH . F 3 HOH B 71 471 61 HOH HOH . F 3 HOH B 72 472 39 HOH HOH . F 3 HOH B 73 473 70 HOH HOH . F 3 HOH B 74 474 105 HOH HOH . F 3 HOH B 75 475 143 HOH HOH . F 3 HOH B 76 476 41 HOH HOH . F 3 HOH B 77 477 136 HOH HOH . F 3 HOH B 78 478 144 HOH HOH . F 3 HOH B 79 479 127 HOH HOH . F 3 HOH B 80 480 170 HOH HOH . F 3 HOH B 81 481 154 HOH HOH . F 3 HOH B 82 482 62 HOH HOH . F 3 HOH B 83 483 179 HOH HOH . F 3 HOH B 84 484 30 HOH HOH . F 3 HOH B 85 485 211 HOH HOH . F 3 HOH B 86 486 65 HOH HOH . F 3 HOH B 87 487 137 HOH HOH . F 3 HOH B 88 488 163 HOH HOH . F 3 HOH B 89 489 216 HOH HOH . F 3 HOH B 90 490 101 HOH HOH . F 3 HOH B 91 491 183 HOH HOH . F 3 HOH B 92 492 212 HOH HOH . F 3 HOH B 93 493 73 HOH HOH . F 3 HOH B 94 494 140 HOH HOH . F 3 HOH B 95 495 40 HOH HOH . F 3 HOH B 96 496 214 HOH HOH . F 3 HOH B 97 497 156 HOH HOH . F 3 HOH B 98 498 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JEQ . . . C 2 -24.511 -19.196 11.227 1 21.26 ? C10 JEQ 301 A 1 HETATM 2 C C13 JEQ . . . C 2 -25.31 -22.759 10.599 1 26.27 ? C13 JEQ 301 A 1 HETATM 3 C C15 JEQ . . . C 2 -23.273 -23.998 11.154 1 24.05 ? C15 JEQ 301 A 1 HETATM 4 C C17 JEQ . . . C 2 -21.621 -23.593 9.326 1 32.42 ? C17 JEQ 301 A 1 HETATM 5 C C20 JEQ . . . C 2 -22.484 -22.864 6.708 1 43.69 ? C20 JEQ 301 A 1 HETATM 6 C C21 JEQ . . . C 2 -23.719 -22.332 7.21 1 38.95 ? C21 JEQ 301 A 1 HETATM 7 C C22 JEQ . . . C 2 -24.194 -21.08 6.761 1 36.34 ? C22 JEQ 301 A 1 HETATM 8 C C24 JEQ . . . C 2 -22.298 -20.874 5.31 1 43.2 ? C24 JEQ 301 A 1 HETATM 9 C C26 JEQ . . . C 2 -20.39 -25.34 8.377 1 33.03 ? C26 JEQ 301 A 1 HETATM 10 C C28 JEQ . . . C 2 -21.924 -25.804 10.238 1 34.27 ? C28 JEQ 301 A 1 HETATM 11 N N01 JEQ . . . C 2 -17.986 -16.916 12.998 1 19.4 ? N01 JEQ 301 A 1 HETATM 12 C C02 JEQ . . . C 2 -18.894 -17.998 12.753 1 20.66 ? C02 JEQ 301 A 1 HETATM 13 N N03 JEQ . . . C 2 -18.604 -19.253 12.693 1 22.87 ? N03 JEQ 301 A 1 HETATM 14 N N04 JEQ . . . C 2 -19.828 -19.971 12.427 1 23.43 ? N04 JEQ 301 A 1 HETATM 15 C C05 JEQ . . . C 2 -20.808 -19.163 12.362 1 23.28 ? C05 JEQ 301 A 1 HETATM 16 C C06 JEQ . . . C 2 -22.186 -19.654 11.972 1 19.83 ? C06 JEQ 301 A 1 HETATM 17 C C07 JEQ . . . C 2 -22.342 -21.002 11.74 1 22.23 ? C07 JEQ 301 A 1 HETATM 18 C C08 JEQ . . . C 2 -23.619 -21.509 11.271 1 23.25 ? C08 JEQ 301 A 1 HETATM 19 C C09 JEQ . . . C 2 -24.69 -20.59 11.03 1 24.12 ? C09 JEQ 301 A 1 HETATM 20 C C11 JEQ . . . C 2 -23.29 -18.694 11.68 1 21.51 ? C11 JEQ 301 A 1 HETATM 21 C C12 JEQ . . . C 2 -25.753 -21.373 10.588 1 23.15 ? C12 JEQ 301 A 1 HETATM 22 N N14 JEQ . . . C 2 -24.05 -22.789 10.984 1 26.43 ? N14 JEQ 301 A 1 HETATM 23 C C16 JEQ . . . C 2 -22.603 -24.576 9.891 1 28.03 ? C16 JEQ 301 A 1 HETATM 24 N N18 JEQ . . . C 2 -21.048 -24.099 8.126 1 39.76 ? N18 JEQ 301 A 1 HETATM 25 C C19 JEQ . . . C 2 -21.936 -24.23 7.207 1 41.59 ? C19 JEQ 301 A 1 HETATM 26 C C23 JEQ . . . C 2 -23.476 -20.365 5.805 1 38.34 ? C23 JEQ 301 A 1 HETATM 27 C C25 JEQ . . . C 2 -21.796 -22.17 5.789 1 47.93 ? C25 JEQ 301 A 1 HETATM 28 C C27 JEQ . . . C 2 -21.255 -26.35 9.116 1 33.57 ? C27 JEQ 301 A 1 HETATM 29 C C29 JEQ . . . C 2 -20.303 -17.851 12.507 1 21.68 ? C29 JEQ 301 A 1 HETATM 30 C C30 JEQ . . . C 2 -20.953 -16.535 12.52 1 20.45 ? C30 JEQ 301 A 1 HETATM 31 N N31 JEQ . . . C 2 -21.384 -15.432 12.549 1 21.74 ? N31 JEQ 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #