data_6QSK # _model_server_result.job_id gk6uB4ym-J6Uo_YDdL8JpQ _model_server_result.datetime_utc '2024-10-20 00:40:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 6QSK # _exptl.entry_id 6QSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.93 _cell.angle_beta 90.08 _cell.angle_gamma 90.19 _cell.entry_id 6QSK _cell.length_a 45.705 _cell.length_b 102.716 _cell.length_c 181.253 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M,N,Q 1 1 B 2 1 G 2 2 C,J,O 3 1 H,S 3 2 D,F,K,L,P,R 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.705 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OH TYR 28 D TYR 28 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 D O TYR 281 D TYR 281 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 6QSK _atom_sites.fract_transf_matrix[1][1] 0.021879 _atom_sites.fract_transf_matrix[1][2] 0.000071 _atom_sites.fract_transf_matrix[1][3] 0.000031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009736 _atom_sites.fract_transf_matrix[2][3] -0.000012 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 9 OLC OLC . J 3 5GP C 1 401 401 5GP 5GP . K 3 5GP D 1 401 401 5GP 5GP . L 4 NA D 1 402 1 NA NA . M 3 5GP E 1 401 401 5GP 5GP . N 2 OLC E 1 402 10 OLC OLC . O 5 HOH C 1 501 1 HOH HOH . O 5 HOH C 2 502 3 HOH HOH . O 5 HOH C 3 503 9 HOH HOH . O 5 HOH C 4 504 11 HOH HOH . O 5 HOH C 5 505 10 HOH HOH . P 5 HOH D 1 501 5 HOH HOH . P 5 HOH D 2 502 8 HOH HOH . Q 5 HOH E 1 501 4 HOH HOH . R 5 HOH F 1 401 6 HOH HOH . S 5 HOH H 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . J 3 -42.544 -102.15 57.568 1 157.78 ? P 5GP 401 C 1 HETATM 2 O O1P 5GP . . . J 3 -41.276 -101.547 57.705 1 139.75 ? O1P 5GP 401 C 1 HETATM 3 O O2P 5GP . . . J 3 -42.713 -102.914 56.282 1 142.85 ? O2P 5GP 401 C 1 HETATM 4 O O3P 5GP . . . J 3 -43.667 -101.188 57.738 1 142.51 ? O3P 5GP 401 C 1 HETATM 5 O O5' 5GP . . . J 3 -42.697 -103.136 58.754 1 146.27 ? O5' 5GP 401 C 1 HETATM 6 C C5' 5GP . . . J 3 -42.989 -102.499 60.007 1 137.59 ? C5' 5GP 401 C 1 HETATM 7 C C4' 5GP . . . J 3 -41.786 -101.674 60.356 1 143.69 ? C4' 5GP 401 C 1 HETATM 8 O O4' 5GP . . . J 3 -42.055 -100.854 61.5 1 138.01 ? O4' 5GP 401 C 1 HETATM 9 C C3' 5GP . . . J 3 -40.552 -102.45 60.775 1 140.06 ? C3' 5GP 401 C 1 HETATM 10 O O3' 5GP . . . J 3 -39.851 -102.979 59.656 1 136.91 ? O3' 5GP 401 C 1 HETATM 11 C C2' 5GP . . . J 3 -39.748 -101.391 61.537 1 136.3 ? C2' 5GP 401 C 1 HETATM 12 O O2' 5GP . . . J 3 -38.731 -100.846 60.715 1 136.48 ? O2' 5GP 401 C 1 HETATM 13 C C1' 5GP . . . J 3 -40.801 -100.319 61.859 1 136.18 ? C1' 5GP 401 C 1 HETATM 14 N N9 5GP . . . J 3 -40.846 -99.938 63.266 1 135.76 ? N9 5GP 401 C 1 HETATM 15 C C8 5GP . . . J 3 -41.769 -99.135 63.861 1 135.61 ? C8 5GP 401 C 1 HETATM 16 N N7 5GP . . . J 3 -41.501 -98.882 65.11 1 135.98 ? N7 5GP 401 C 1 HETATM 17 C C5 5GP . . . J 3 -40.339 -99.582 65.357 1 136.03 ? C5 5GP 401 C 1 HETATM 18 C C6 5GP . . . J 3 -39.604 -99.744 66.553 1 136.88 ? C6 5GP 401 C 1 HETATM 19 O O6 5GP . . . J 3 -39.844 -99.216 67.631 1 136.48 ? O6 5GP 401 C 1 HETATM 20 N N1 5GP . . . J 3 -38.536 -100.607 66.405 1 136.11 ? N1 5GP 401 C 1 HETATM 21 C C2 5GP . . . J 3 -38.216 -101.24 65.238 1 135.45 ? C2 5GP 401 C 1 HETATM 22 N N2 5GP . . . J 3 -37.23 -102.127 65.284 1 135.21 ? N2 5GP 401 C 1 HETATM 23 N N3 5GP . . . J 3 -38.884 -101.063 64.103 1 135.35 ? N3 5GP 401 C 1 HETATM 24 C C4 5GP . . . J 3 -39.93 -100.238 64.236 1 136.9 ? C4 5GP 401 C 1 HETATM 25 H HOP2 5GP . . . J 3 -42.016 -103.097 55.599 1 171.41 ? HOP2 5GP 401 C 1 HETATM 26 H HOP3 5GP . . . J 3 -44.466 -101.207 57.149 1 171.01 ? HOP3 5GP 401 C 1 HETATM 27 H "H5'1" 5GP . . . J 3 -43.173 -103.244 60.781 1 165.11 ? "H5'1" 5GP 401 C 1 HETATM 28 H "H5'2" 5GP . . . J 3 -43.89 -101.907 59.855 1 165.11 ? "H5'2" 5GP 401 C 1 HETATM 29 H H4' 5GP . . . J 3 -41.55 -100.976 59.555 1 172.43 ? H4' 5GP 401 C 1 HETATM 30 H H3' 5GP . . . J 3 -40.809 -103.289 61.42 1 168.07 ? H3' 5GP 401 C 1 HETATM 31 H HO3' 5GP . . . J 3 -38.93 -102.608 59.658 1 164.29 ? HO3' 5GP 401 C 1 HETATM 32 H H2' 5GP . . . J 3 -39.311 -101.824 62.435 1 163.57 ? H2' 5GP 401 C 1 HETATM 33 H HO2' 5GP . . . J 3 -37.927 -100.786 61.296 1 163.78 ? HO2' 5GP 401 C 1 HETATM 34 H H1' 5GP . . . J 3 -40.628 -99.404 61.294 1 163.41 ? H1' 5GP 401 C 1 HETATM 35 H H8 5GP . . . J 3 -42.643 -98.744 63.342 1 162.73 ? H8 5GP 401 C 1 HETATM 36 H HN1 5GP . . . J 3 -37.976 -100.758 67.238 1 163.33 ? HN1 5GP 401 C 1 HETATM 37 H HN21 5GP . . . J 3 -36.953 -102.625 64.445 1 162.25 ? HN21 5GP 401 C 1 HETATM 38 H HN22 5GP . . . J 3 -36.721 -102.346 66.135 1 162.25 ? HN22 5GP 401 C 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #