data_6QSK
#
_model_server_result.job_id            6dyL-nngMX0jWdadwYkW8Q 
_model_server_result.datetime_utc      '2024-10-20 00:24:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qsk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    6QSK 
#
_exptl.entry_id    6QSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.93 
_cell.angle_beta          90.08 
_cell.angle_gamma         90.19 
_cell.entry_id            6QSK 
_cell.length_a            45.705 
_cell.length_b            102.716 
_cell.length_c            181.253 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,M,N,Q 1 1 
B 2 1 
G 2 2 
C,J,O 3 1 
H,S 3 2 
D,F,K,L,P,R 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.705 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OH TYR 28 D TYR 28 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc2 D O TYR 281 D TYR 281 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     6QSK 
_atom_sites.fract_transf_matrix[1][1]    0.021879 
_atom_sites.fract_transf_matrix[1][2]    0.000071 
_atom_sites.fract_transf_matrix[1][3]    0.000031 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009736 
_atom_sites.fract_transf_matrix[2][3]    -0.000012 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 401 9 OLC OLC . 
J 3 5GP C 1 401 401 5GP 5GP . 
K 3 5GP D 1 401 401 5GP 5GP . 
L 4 NA D 1 402 1 NA NA . 
M 3 5GP E 1 401 401 5GP 5GP . 
N 2 OLC E 1 402 10 OLC OLC . 
O 5 HOH C 1 501 1 HOH HOH . 
O 5 HOH C 2 502 3 HOH HOH . 
O 5 HOH C 3 503 9 HOH HOH . 
O 5 HOH C 4 504 11 HOH HOH . 
O 5 HOH C 5 505 10 HOH HOH . 
P 5 HOH D 1 501 5 HOH HOH . 
P 5 HOH D 2 502 8 HOH HOH . 
Q 5 HOH E 1 501 4 HOH HOH . 
R 5 HOH F 1 401 6 HOH HOH . 
S 5 HOH H 1 401 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . K 3 -45.871 -106.38 146.903 1 144.63 ? P 5GP 401 D 1 
HETATM 2 O O1P 5GP . . . K 3 -45.59 -104.977 146.857 1 136.73 ? O1P 5GP 401 D 1 
HETATM 3 O O2P 5GP . . . K 3 -44.977 -107.195 146.034 1 136.88 ? O2P 5GP 401 D 1 
HETATM 4 O O3P 5GP . . . K 3 -47.249 -106.656 146.487 1 137.08 ? O3P 5GP 401 D 1 
HETATM 5 O O5' 5GP . . . K 3 -45.758 -107.016 148.324 1 140.74 ? O5' 5GP 401 D 1 
HETATM 6 C C5' 5GP . . . K 3 -46.953 -107.505 148.961 1 136.42 ? C5' 5GP 401 D 1 
HETATM 7 C C4' 5GP . . . K 3 -47.319 -106.564 150.074 1 143.94 ? C4' 5GP 401 D 1 
HETATM 8 O O4' 5GP . . . K 3 -47.86 -107.295 151.202 1 139.5 ? O4' 5GP 401 D 1 
HETATM 9 C C3' 5GP . . . K 3 -46.132 -105.801 150.633 1 141.06 ? C3' 5GP 401 D 1 
HETATM 10 O O3' 5GP . . . K 3 -46.586 -104.589 151.213 1 139.88 ? O3' 5GP 401 D 1 
HETATM 11 C C2' 5GP . . . K 3 -45.691 -106.706 151.761 1 140.78 ? C2' 5GP 401 D 1 
HETATM 12 O O2' 5GP . . . K 3 -44.824 -105.965 152.608 1 145.86 ? O2' 5GP 401 D 1 
HETATM 13 C C1' 5GP . . . K 3 -47.069 -106.996 152.334 1 144.33 ? C1' 5GP 401 D 1 
HETATM 14 N N9 5GP . . . K 3 -47.154 -108.103 153.304 1 141.13 ? N9 5GP 401 D 1 
HETATM 15 C C8 5GP . . . K 3 -46.247 -109.099 153.496 1 134.87 ? C8 5GP 401 D 1 
HETATM 16 N N7 5GP . . . K 3 -46.542 -109.872 154.509 1 135.08 ? N7 5GP 401 D 1 
HETATM 17 C C5 5GP . . . K 3 -47.724 -109.36 155.004 1 134.87 ? C5 5GP 401 D 1 
HETATM 18 C C6 5GP . . . K 3 -48.512 -109.77 156.101 1 134.95 ? C6 5GP 401 D 1 
HETATM 19 O O6 5GP . . . K 3 -48.307 -110.735 156.823 1 135.35 ? O6 5GP 401 D 1 
HETATM 20 N N1 5GP . . . K 3 -49.614 -108.964 156.299 1 134.43 ? N1 5GP 401 D 1 
HETATM 21 C C2 5GP . . . K 3 -49.935 -107.89 155.518 1 133.51 ? C2 5GP 401 D 1 
HETATM 22 N N2 5GP . . . K 3 -51.025 -107.199 155.854 1 132.84 ? N2 5GP 401 D 1 
HETATM 23 N N3 5GP . . . K 3 -49.208 -107.508 154.469 1 143.37 ? N3 5GP 401 D 1 
HETATM 24 C C4 5GP . . . K 3 -48.117 -108.279 154.277 1 140.91 ? C4 5GP 401 D 1 
HETATM 25 H HOP2 5GP . . . K 3 -44.644 -106.959 145.129 1 164.25 ? HOP2 5GP 401 D 1 
HETATM 26 H HOP3 5GP . . . K 3 -47.618 -106.308 145.634 1 164.5 ? HOP3 5GP 401 D 1 
HETATM 27 H "H5'1" 5GP . . . K 3 -46.781 -108.503 149.361 1 163.7 ? "H5'1" 5GP 401 D 1 
HETATM 28 H "H5'2" 5GP . . . K 3 -47.713 -107.562 148.183 1 163.7 ? "H5'2" 5GP 401 D 1 
HETATM 29 H H4' 5GP . . . K 3 -48.098 -105.885 149.732 1 172.73 ? H4' 5GP 401 D 1 
HETATM 30 H H3' 5GP . . . K 3 -45.351 -105.595 149.903 1 169.27 ? H3' 5GP 401 D 1 
HETATM 31 H HO3' 5GP . . . K 3 -46.282 -103.835 150.643 1 167.85 ? HO3' 5GP 401 D 1 
HETATM 32 H H2' 5GP . . . K 3 -45.194 -107.595 151.374 1 168.94 ? H2' 5GP 401 D 1 
HETATM 33 H HO2' 5GP . . . K 3 -44.997 -106.305 153.525 1 175.03 ? HO2' 5GP 401 D 1 
HETATM 34 H H1' 5GP . . . K 3 -47.484 -106.121 152.833 1 173.19 ? H1' 5GP 401 D 1 
HETATM 35 H H8 5GP . . . K 3 -45.367 -109.251 152.873 1 161.84 ? H8 5GP 401 D 1 
HETATM 36 H HN1 5GP . . . K 3 -50.203 -109.214 157.087 1 161.32 ? HN1 5GP 401 D 1 
HETATM 37 H HN21 5GP . . . K 3 -51.577 -107.476 156.66 1 159.4 ? HN21 5GP 401 D 1 
HETATM 38 H HN22 5GP . . . K 3 -51.347 -106.387 155.337 1 159.4 ? HN22 5GP 401 D 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#