data_6QSK
#
_model_server_result.job_id            wSo9Thdv_BdsB_fukKlxjQ 
_model_server_result.datetime_utc      '2024-10-20 00:48:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qsk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    6QSK 
#
_exptl.entry_id    6QSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.93 
_cell.angle_beta          90.08 
_cell.angle_gamma         90.19 
_cell.entry_id            6QSK 
_cell.length_a            45.705 
_cell.length_b            102.716 
_cell.length_c            181.253 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,M,N,Q 1 1 
B 2 1 
G 2 2 
C,J,O 3 1 
H,S 3 2 
D,F,K,L,P,R 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.705 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D OH TYR 28 D TYR 28 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc2 D O TYR 281 D TYR 281 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     6QSK 
_atom_sites.fract_transf_matrix[1][1]    0.021879 
_atom_sites.fract_transf_matrix[1][2]    0.000071 
_atom_sites.fract_transf_matrix[1][3]    0.000031 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009736 
_atom_sites.fract_transf_matrix[2][3]    -0.000012 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 OLC A 1 401 9 OLC OLC . 
J 3 5GP C 1 401 401 5GP 5GP . 
K 3 5GP D 1 401 401 5GP 5GP . 
L 4 NA D 1 402 1 NA NA . 
M 3 5GP E 1 401 401 5GP 5GP . 
N 2 OLC E 1 402 10 OLC OLC . 
O 5 HOH C 1 501 1 HOH HOH . 
O 5 HOH C 2 502 3 HOH HOH . 
O 5 HOH C 3 503 9 HOH HOH . 
O 5 HOH C 4 504 11 HOH HOH . 
O 5 HOH C 5 505 10 HOH HOH . 
P 5 HOH D 1 501 5 HOH HOH . 
P 5 HOH D 2 502 8 HOH HOH . 
Q 5 HOH E 1 501 4 HOH HOH . 
R 5 HOH F 1 401 6 HOH HOH . 
S 5 HOH H 1 401 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . M 3 -21.222 -51.466 76.533 1 156.01 ? P 5GP 401 E 1 
HETATM 2 O O1P 5GP . . . M 3 -21.037 -51.536 75.127 1 142.83 ? O1P 5GP 401 E 1 
HETATM 3 O O2P 5GP . . . M 3 -19.944 -51.398 77.282 1 136.18 ? O2P 5GP 401 E 1 
HETATM 4 O O3P 5GP . . . M 3 -21.924 -52.697 77.017 1 138.43 ? O3P 5GP 401 E 1 
HETATM 5 O O5' 5GP . . . M 3 -22.004 -50.167 77.049 1 134.05 ? O5' 5GP 401 E 1 
HETATM 6 C C5' 5GP . . . M 3 -22.845 -49.264 76.3 1 132.83 ? C5' 5GP 401 E 1 
HETATM 7 C C4' 5GP . . . M 3 -24.078 -48.991 77.124 1 134.68 ? C4' 5GP 401 E 1 
HETATM 8 O O4' 5GP . . . M 3 -23.695 -48.77 78.496 1 141.07 ? O4' 5GP 401 E 1 
HETATM 9 C C3' 5GP . . . M 3 -24.93 -47.783 76.722 1 131.23 ? C3' 5GP 401 E 1 
HETATM 10 O O3' 5GP . . . M 3 -26.296 -48.161 76.626 1 130.66 ? O3' 5GP 401 E 1 
HETATM 11 C C2' 5GP . . . M 3 -24.713 -46.786 77.87 1 131.44 ? C2' 5GP 401 E 1 
HETATM 12 O O2' 5GP . . . M 3 -25.876 -45.995 78.073 1 131.03 ? O2' 5GP 401 E 1 
HETATM 13 C C1' 5GP . . . M 3 -24.493 -47.74 79.029 1 135.7 ? C1' 5GP 401 E 1 
HETATM 14 N N9 5GP . . . M 3 -23.816 -47.212 80.225 1 134.18 ? N9 5GP 401 E 1 
HETATM 15 C C8 5GP . . . M 3 -23.032 -47.97 81.046 1 132.87 ? C8 5GP 401 E 1 
HETATM 16 N N7 5GP . . . M 3 -22.749 -47.385 82.177 1 133.19 ? N7 5GP 401 E 1 
HETATM 17 C C5 5GP . . . M 3 -23.367 -46.152 82.086 1 132.61 ? C5 5GP 401 E 1 
HETATM 18 C C6 5GP . . . M 3 -23.384 -45.04 83.001 1 132.4 ? C6 5GP 401 E 1 
HETATM 19 O O6 5GP . . . M 3 -23.043 -45.034 84.175 1 132.79 ? O6 5GP 401 E 1 
HETATM 20 N N1 5GP . . . M 3 -23.939 -43.918 82.434 1 131.71 ? N1 5GP 401 E 1 
HETATM 21 C C2 5GP . . . M 3 -24.459 -43.864 81.171 1 131.16 ? C2 5GP 401 E 1 
HETATM 22 N N2 5GP . . . M 3 -24.754 -42.658 80.702 1 130.66 ? N2 5GP 401 E 1 
HETATM 23 N N3 5GP . . . M 3 -24.558 -44.922 80.365 1 132.39 ? N3 5GP 401 E 1 
HETATM 24 C C4 5GP . . . M 3 -23.987 -46.016 80.873 1 132.76 ? C4 5GP 401 E 1 
HETATM 25 H HOP2 5GP . . . M 3 -19.523 -52.124 77.813 1 163.41 ? HOP2 5GP 401 E 1 
HETATM 26 H HOP3 5GP . . . M 3 -22.226 -53.407 76.392 1 166.12 ? HOP3 5GP 401 E 1 
HETATM 27 H "H5'1" 5GP . . . M 3 -23.126 -49.712 75.348 1 159.4 ? "H5'1" 5GP 401 E 1 
HETATM 28 H "H5'2" 5GP . . . M 3 -22.249 -48.372 76.112 1 159.4 ? "H5'2" 5GP 401 E 1 
HETATM 29 H H4' 5GP . . . M 3 -24.689 -49.892 77.127 1 161.62 ? H4' 5GP 401 E 1 
HETATM 30 H H3' 5GP . . . M 3 -24.629 -47.368 75.761 1 157.47 ? H3' 5GP 401 E 1 
HETATM 31 H HO3' 5GP . . . M 3 -26.439 -48.603 75.748 1 156.79 ? HO3' 5GP 401 E 1 
HETATM 32 H H2' 5GP . . . M 3 -23.848 -46.155 77.674 1 157.73 ? H2' 5GP 401 E 1 
HETATM 33 H HO2' 5GP . . . M 3 -25.954 -45.429 77.262 1 157.23 ? HO2' 5GP 401 E 1 
HETATM 34 H H1' 5GP . . . M 3 -25.434 -48.166 79.375 1 162.84 ? H1' 5GP 401 E 1 
HETATM 35 H H8 5GP . . . M 3 -22.679 -48.965 80.78 1 159.44 ? H8 5GP 401 E 1 
HETATM 36 H HN1 5GP . . . M 3 -23.946 -43.09 83.022 1 158.05 ? HN1 5GP 401 E 1 
HETATM 37 H HN21 5GP . . . M 3 -25.143 -42.555 79.77 1 156.79 ? HN21 5GP 401 E 1 
HETATM 38 H HN22 5GP . . . M 3 -24.609 -41.806 81.234 1 156.79 ? HN22 5GP 401 E 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#