data_6QSK # _model_server_result.job_id PrHQ34iiMp4geSlq6D3Y1Q _model_server_result.datetime_utc '2024-10-20 00:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":402}' # _entry.id 6QSK # _exptl.entry_id 6QSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.93 _cell.angle_beta 90.08 _cell.angle_gamma 90.19 _cell.entry_id 6QSK _cell.length_a 45.705 _cell.length_b 102.716 _cell.length_c 181.253 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M,N,Q 1 1 B 2 1 G 2 2 C,J,O 3 1 H,S 3 2 D,F,K,L,P,R 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -45.705 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OH TYR 28 D TYR 28 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 D O TYR 281 D TYR 281 1_555 L NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 277 n n C10 C9 OLC doub 278 n n C10 C11 OLC sing 279 n n C9 C8 OLC sing 280 n n C17 C16 OLC sing 281 z n C11 C12 OLC sing 282 n n C8 C7 OLC sing 283 n n C24 C22 OLC sing 284 n n C24 O25 OLC sing 285 n n C16 C15 OLC sing 286 n n C12 C13 OLC sing 287 n n C7 C6 OLC sing 288 n n C15 C14 OLC sing 289 n n C13 C14 OLC sing 290 n n C6 C5 OLC sing 291 n n C5 C4 OLC sing 292 n n C4 C3 OLC sing 293 n n C3 C2 OLC sing 294 n n C2 C1 OLC sing 295 n n C21 C22 OLC sing 296 n n C21 O20 OLC sing 297 n n C1 O19 OLC doub 298 n n C1 O20 OLC sing 299 n n C22 O23 OLC sing 300 n n C18 H18 OLC sing 301 n n C18 H18A OLC sing 302 n n C18 H18B OLC sing 303 n n C10 H10 OLC sing 304 n n C9 H9 OLC sing 305 n n C17 H17 OLC sing 306 n n C17 H17A OLC sing 307 n n C11 H11 OLC sing 308 n n C11 H11A OLC sing 309 n n C8 H8 OLC sing 310 n n C8 H8A OLC sing 311 n n C24 H24 OLC sing 312 n n C24 H24A OLC sing 313 n n C16 H16 OLC sing 314 n n C16 H16A OLC sing 315 n n C12 H12 OLC sing 316 n n C12 H12A OLC sing 317 n n C7 H7 OLC sing 318 n n C7 H7A OLC sing 319 n n C15 H15 OLC sing 320 n n C15 H15A OLC sing 321 n n C13 H13 OLC sing 322 n n C13 H13A OLC sing 323 n n C6 H6 OLC sing 324 n n C6 H6A OLC sing 325 n n C14 H14 OLC sing 326 n n C14 H14A OLC sing 327 n n C5 H5 OLC sing 328 n n C5 H5A OLC sing 329 n n C4 H4 OLC sing 330 n n C4 H4A OLC sing 331 n n C3 H3 OLC sing 332 n n C3 H3A OLC sing 333 n n C2 H2 OLC sing 334 n n C2 H2A OLC sing 335 n n C21 H21 OLC sing 336 n n C21 H21A OLC sing 337 n n C22 H22 OLC sing 338 n n O25 HO25 OLC sing 339 n n O23 HO23 OLC sing 340 n n # _atom_sites.entry_id 6QSK _atom_sites.fract_transf_matrix[1][1] 0.021879 _atom_sites.fract_transf_matrix[1][2] 0.000071 _atom_sites.fract_transf_matrix[1][3] 0.000031 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009736 _atom_sites.fract_transf_matrix[2][3] -0.000012 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 OLC A 1 401 9 OLC OLC . J 3 5GP C 1 401 401 5GP 5GP . K 3 5GP D 1 401 401 5GP 5GP . L 4 NA D 1 402 1 NA NA . M 3 5GP E 1 401 401 5GP 5GP . N 2 OLC E 1 402 10 OLC OLC . O 5 HOH C 1 501 1 HOH HOH . O 5 HOH C 2 502 3 HOH HOH . O 5 HOH C 3 503 9 HOH HOH . O 5 HOH C 4 504 11 HOH HOH . O 5 HOH C 5 505 10 HOH HOH . P 5 HOH D 1 501 5 HOH HOH . P 5 HOH D 2 502 8 HOH HOH . Q 5 HOH E 1 501 4 HOH HOH . R 5 HOH F 1 401 6 HOH HOH . S 5 HOH H 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . N 2 -40.773 -56.199 63.494 1 65.4 ? C18 OLC 402 E 1 HETATM 2 C C10 OLC . . . N 2 -42.477 -47.605 60.784 1 59.56 ? C10 OLC 402 E 1 HETATM 3 C C9 OLC . . . N 2 -42.634 -46.275 60.845 1 52.31 ? C9 OLC 402 E 1 HETATM 4 C C17 OLC . . . N 2 -40.799 -54.671 63.286 1 69.79 ? C17 OLC 402 E 1 HETATM 5 C C11 OLC . . . N 2 -41.2 -48.349 60.49 1 65.96 ? C11 OLC 402 E 1 HETATM 6 C C8 OLC . . . N 2 -41.587 -45.243 60.641 1 61.16 ? C8 OLC 402 E 1 HETATM 7 C C24 OLC . . . N 2 -41.628 -34.054 59.383 1 79.06 ? C24 OLC 402 E 1 HETATM 8 C C16 OLC . . . N 2 -40.417 -54.222 61.85 1 61.96 ? C16 OLC 402 E 1 HETATM 9 C C12 OLC . . . N 2 -41.248 -49.862 60.92 1 62.91 ? C12 OLC 402 E 1 HETATM 10 C C7 OLC . . . N 2 -41.248 -44.503 61.973 1 64.91 ? C7 OLC 402 E 1 HETATM 11 C C15 OLC . . . N 2 -40.147 -52.728 61.938 1 57.8 ? C15 OLC 402 E 1 HETATM 12 C C13 OLC . . . N 2 -39.878 -50.578 60.692 1 63.82 ? C13 OLC 402 E 1 HETATM 13 C C6 OLC . . . N 2 -42.136 -43.278 62.271 1 64.73 ? C6 OLC 402 E 1 HETATM 14 C C14 OLC . . . N 2 -40.003 -52.117 60.563 1 61.15 ? C14 OLC 402 E 1 HETATM 15 C C5 OLC . . . N 2 -41.868 -42.149 61.247 1 69.91 ? C5 OLC 402 E 1 HETATM 16 C C4 OLC . . . N 2 -42.883 -41.004 61.512 1 72.82 ? C4 OLC 402 E 1 HETATM 17 C C3 OLC . . . N 2 -43.356 -40.305 60.211 1 66.21 ? C3 OLC 402 E 1 HETATM 18 C C2 OLC . . . N 2 -42.52 -39.061 59.924 1 65.63 ? C2 OLC 402 E 1 HETATM 19 C C21 OLC . . . N 2 -43.54 -35.443 60.054 1 69.92 ? C21 OLC 402 E 1 HETATM 20 C C1 OLC . . . N 2 -43.124 -37.816 60.553 1 73.27 ? C1 OLC 402 E 1 HETATM 21 C C22 OLC . . . N 2 -42.302 -34.751 60.609 1 69.74 ? C22 OLC 402 E 1 HETATM 22 O O19 OLC . . . N 2 -43.623 -37.712 61.676 1 72.57 ? O19 OLC 402 E 1 HETATM 23 O O25 OLC . . . N 2 -40.289 -33.88 59.765 1 77.8 ? O25 OLC 402 E 1 HETATM 24 O O23 OLC . . . N 2 -42.695 -33.914 61.643 1 73.85 ? O23 OLC 402 E 1 HETATM 25 O O20 OLC . . . N 2 -43.034 -36.713 59.678 1 77.12 ? O20 OLC 402 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #