data_6QTV # _model_server_result.job_id SmJ6LdDZPWcoD4vDjvSzWQ _model_server_result.datetime_utc '2024-10-25 20:34:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 6QTV # _exptl.entry_id 6QTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QTV _cell.length_a 48.896 _cell.length_b 55.089 _cell.length_c 103.069 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CYS 164 A CYS 509 1_555 A N CSO 165 A CSO 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSO 165 A CSO 510 1_555 A N VAL 166 A VAL 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 270 n n C1 C3 MLI sing 271 n n C1 H11 MLI sing 272 n n C1 H12 MLI sing 273 n n C2 O6 MLI doub 274 n n C2 O7 MLI sing 275 n n C3 O8 MLI doub 276 n n C3 O9 MLI sing 277 n n # _atom_sites.entry_id 6QTV _atom_sites.fract_transf_matrix[1][1] 0.020452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MLI A 1 701 1 MLI MLI . D 3 MLI A 1 702 2 MLI MLI . E 3 MLI A 1 703 3 MLI MLI . F 4 GOL A 1 704 1 GOL GOL . G 4 GOL A 1 705 2 GOL GOL . H 5 HOH A 1 801 142 HOH HOH . H 5 HOH A 2 802 217 HOH HOH . H 5 HOH A 3 803 155 HOH HOH . H 5 HOH A 4 804 189 HOH HOH . H 5 HOH A 5 805 107 HOH HOH . H 5 HOH A 6 806 163 HOH HOH . H 5 HOH A 7 807 160 HOH HOH . H 5 HOH A 8 808 112 HOH HOH . H 5 HOH A 9 809 224 HOH HOH . H 5 HOH A 10 810 104 HOH HOH . H 5 HOH A 11 811 181 HOH HOH . H 5 HOH A 12 812 28 HOH HOH . H 5 HOH A 13 813 162 HOH HOH . H 5 HOH A 14 814 196 HOH HOH . H 5 HOH A 15 815 185 HOH HOH . H 5 HOH A 16 816 177 HOH HOH . H 5 HOH A 17 817 243 HOH HOH . H 5 HOH A 18 818 103 HOH HOH . H 5 HOH A 19 819 66 HOH HOH . H 5 HOH A 20 820 44 HOH HOH . H 5 HOH A 21 821 14 HOH HOH . H 5 HOH A 22 822 105 HOH HOH . H 5 HOH A 23 823 215 HOH HOH . H 5 HOH A 24 824 81 HOH HOH . H 5 HOH A 25 825 33 HOH HOH . H 5 HOH A 26 826 152 HOH HOH . H 5 HOH A 27 827 98 HOH HOH . H 5 HOH A 28 828 30 HOH HOH . H 5 HOH A 29 829 37 HOH HOH . H 5 HOH A 30 830 202 HOH HOH . H 5 HOH A 31 831 2 HOH HOH . H 5 HOH A 32 832 128 HOH HOH . H 5 HOH A 33 833 178 HOH HOH . H 5 HOH A 34 834 89 HOH HOH . H 5 HOH A 35 835 1 HOH HOH . H 5 HOH A 36 836 116 HOH HOH . H 5 HOH A 37 837 240 HOH HOH . H 5 HOH A 38 838 87 HOH HOH . H 5 HOH A 39 839 61 HOH HOH . H 5 HOH A 40 840 100 HOH HOH . H 5 HOH A 41 841 253 HOH HOH . H 5 HOH A 42 842 141 HOH HOH . H 5 HOH A 43 843 127 HOH HOH . H 5 HOH A 44 844 60 HOH HOH . H 5 HOH A 45 845 64 HOH HOH . H 5 HOH A 46 846 21 HOH HOH . H 5 HOH A 47 847 143 HOH HOH . H 5 HOH A 48 848 24 HOH HOH . H 5 HOH A 49 849 108 HOH HOH . H 5 HOH A 50 850 161 HOH HOH . H 5 HOH A 51 851 145 HOH HOH . H 5 HOH A 52 852 3 HOH HOH . H 5 HOH A 53 853 201 HOH HOH . H 5 HOH A 54 854 48 HOH HOH . H 5 HOH A 55 855 210 HOH HOH . H 5 HOH A 56 856 32 HOH HOH . H 5 HOH A 57 857 211 HOH HOH . H 5 HOH A 58 858 111 HOH HOH . H 5 HOH A 59 859 84 HOH HOH . H 5 HOH A 60 860 26 HOH HOH . H 5 HOH A 61 861 158 HOH HOH . H 5 HOH A 62 862 85 HOH HOH . H 5 HOH A 63 863 220 HOH HOH . H 5 HOH A 64 864 63 HOH HOH . H 5 HOH A 65 865 11 HOH HOH . H 5 HOH A 66 866 96 HOH HOH . H 5 HOH A 67 867 12 HOH HOH . H 5 HOH A 68 868 38 HOH HOH . H 5 HOH A 69 869 58 HOH HOH . H 5 HOH A 70 870 82 HOH HOH . H 5 HOH A 71 871 132 HOH HOH . H 5 HOH A 72 872 136 HOH HOH . H 5 HOH A 73 873 25 HOH HOH . H 5 HOH A 74 874 6 HOH HOH . H 5 HOH A 75 875 29 HOH HOH . H 5 HOH A 76 876 68 HOH HOH . H 5 HOH A 77 877 259 HOH HOH . H 5 HOH A 78 878 86 HOH HOH . H 5 HOH A 79 879 59 HOH HOH . H 5 HOH A 80 880 129 HOH HOH . H 5 HOH A 81 881 18 HOH HOH . H 5 HOH A 82 882 53 HOH HOH . H 5 HOH A 83 883 31 HOH HOH . H 5 HOH A 84 884 147 HOH HOH . H 5 HOH A 85 885 150 HOH HOH . H 5 HOH A 86 886 216 HOH HOH . H 5 HOH A 87 887 118 HOH HOH . H 5 HOH A 88 888 39 HOH HOH . H 5 HOH A 89 889 144 HOH HOH . H 5 HOH A 90 890 110 HOH HOH . H 5 HOH A 91 891 126 HOH HOH . H 5 HOH A 92 892 75 HOH HOH . H 5 HOH A 93 893 9 HOH HOH . H 5 HOH A 94 894 209 HOH HOH . H 5 HOH A 95 895 122 HOH HOH . H 5 HOH A 96 896 146 HOH HOH . H 5 HOH A 97 897 7 HOH HOH . H 5 HOH A 98 898 97 HOH HOH . H 5 HOH A 99 899 34 HOH HOH . H 5 HOH A 100 900 88 HOH HOH . H 5 HOH A 101 901 45 HOH HOH . H 5 HOH A 102 902 248 HOH HOH . H 5 HOH A 103 903 71 HOH HOH . H 5 HOH A 104 904 41 HOH HOH . H 5 HOH A 105 905 225 HOH HOH . H 5 HOH A 106 906 166 HOH HOH . H 5 HOH A 107 907 188 HOH HOH . H 5 HOH A 108 908 183 HOH HOH . H 5 HOH A 109 909 115 HOH HOH . H 5 HOH A 110 910 5 HOH HOH . H 5 HOH A 111 911 74 HOH HOH . H 5 HOH A 112 912 52 HOH HOH . H 5 HOH A 113 913 8 HOH HOH . H 5 HOH A 114 914 113 HOH HOH . H 5 HOH A 115 915 175 HOH HOH . H 5 HOH A 116 916 70 HOH HOH . H 5 HOH A 117 917 17 HOH HOH . H 5 HOH A 118 918 43 HOH HOH . H 5 HOH A 119 919 80 HOH HOH . H 5 HOH A 120 920 117 HOH HOH . H 5 HOH A 121 921 36 HOH HOH . H 5 HOH A 122 922 235 HOH HOH . H 5 HOH A 123 923 10 HOH HOH . H 5 HOH A 124 924 131 HOH HOH . H 5 HOH A 125 925 214 HOH HOH . H 5 HOH A 126 926 22 HOH HOH . H 5 HOH A 127 927 261 HOH HOH . H 5 HOH A 128 928 4 HOH HOH . H 5 HOH A 129 929 55 HOH HOH . H 5 HOH A 130 930 93 HOH HOH . H 5 HOH A 131 931 35 HOH HOH . H 5 HOH A 132 932 27 HOH HOH . H 5 HOH A 133 933 109 HOH HOH . H 5 HOH A 134 934 13 HOH HOH . H 5 HOH A 135 935 191 HOH HOH . H 5 HOH A 136 936 139 HOH HOH . H 5 HOH A 137 937 76 HOH HOH . H 5 HOH A 138 938 138 HOH HOH . H 5 HOH A 139 939 106 HOH HOH . H 5 HOH A 140 940 73 HOH HOH . H 5 HOH A 141 941 54 HOH HOH . H 5 HOH A 142 942 193 HOH HOH . H 5 HOH A 143 943 218 HOH HOH . H 5 HOH A 144 944 51 HOH HOH . H 5 HOH A 145 945 62 HOH HOH . H 5 HOH A 146 946 56 HOH HOH . H 5 HOH A 147 947 19 HOH HOH . H 5 HOH A 148 948 40 HOH HOH . H 5 HOH A 149 949 42 HOH HOH . H 5 HOH A 150 950 140 HOH HOH . H 5 HOH A 151 951 20 HOH HOH . H 5 HOH A 152 952 114 HOH HOH . H 5 HOH A 153 953 195 HOH HOH . H 5 HOH A 154 954 250 HOH HOH . H 5 HOH A 155 955 135 HOH HOH . H 5 HOH A 156 956 121 HOH HOH . H 5 HOH A 157 957 208 HOH HOH . H 5 HOH A 158 958 46 HOH HOH . H 5 HOH A 159 959 16 HOH HOH . H 5 HOH A 160 960 119 HOH HOH . H 5 HOH A 161 961 15 HOH HOH . H 5 HOH A 162 962 187 HOH HOH . H 5 HOH A 163 963 79 HOH HOH . H 5 HOH A 164 964 255 HOH HOH . H 5 HOH A 165 965 23 HOH HOH . H 5 HOH A 166 966 174 HOH HOH . H 5 HOH A 167 967 102 HOH HOH . H 5 HOH A 168 968 169 HOH HOH . H 5 HOH A 169 969 156 HOH HOH . H 5 HOH A 170 970 176 HOH HOH . H 5 HOH A 171 971 157 HOH HOH . H 5 HOH A 172 972 229 HOH HOH . H 5 HOH A 173 973 165 HOH HOH . H 5 HOH A 174 974 164 HOH HOH . H 5 HOH A 175 975 92 HOH HOH . H 5 HOH A 176 976 251 HOH HOH . H 5 HOH A 177 977 151 HOH HOH . H 5 HOH A 178 978 99 HOH HOH . H 5 HOH A 179 979 124 HOH HOH . H 5 HOH A 180 980 219 HOH HOH . H 5 HOH A 181 981 212 HOH HOH . H 5 HOH A 182 982 94 HOH HOH . H 5 HOH A 183 983 238 HOH HOH . H 5 HOH A 184 984 57 HOH HOH . H 5 HOH A 185 985 78 HOH HOH . H 5 HOH A 186 986 72 HOH HOH . H 5 HOH A 187 987 239 HOH HOH . H 5 HOH A 188 988 67 HOH HOH . H 5 HOH A 189 989 179 HOH HOH . H 5 HOH A 190 990 125 HOH HOH . H 5 HOH A 191 991 228 HOH HOH . H 5 HOH A 192 992 199 HOH HOH . H 5 HOH A 193 993 159 HOH HOH . H 5 HOH A 194 994 222 HOH HOH . H 5 HOH A 195 995 47 HOH HOH . H 5 HOH A 196 996 263 HOH HOH . H 5 HOH A 197 997 236 HOH HOH . H 5 HOH A 198 998 197 HOH HOH . H 5 HOH A 199 999 223 HOH HOH . H 5 HOH A 200 1000 237 HOH HOH . H 5 HOH A 201 1001 77 HOH HOH . H 5 HOH A 202 1002 182 HOH HOH . H 5 HOH A 203 1003 153 HOH HOH . H 5 HOH A 204 1004 167 HOH HOH . H 5 HOH A 205 1005 171 HOH HOH . H 5 HOH A 206 1006 249 HOH HOH . H 5 HOH A 207 1007 173 HOH HOH . H 5 HOH A 208 1008 257 HOH HOH . H 5 HOH A 209 1009 190 HOH HOH . H 5 HOH A 210 1010 95 HOH HOH . H 5 HOH A 211 1011 65 HOH HOH . H 5 HOH A 212 1012 101 HOH HOH . H 5 HOH A 213 1013 133 HOH HOH . H 5 HOH A 214 1014 213 HOH HOH . H 5 HOH A 215 1015 168 HOH HOH . H 5 HOH A 216 1016 198 HOH HOH . H 5 HOH A 217 1017 260 HOH HOH . H 5 HOH A 218 1018 232 HOH HOH . H 5 HOH A 219 1019 137 HOH HOH . H 5 HOH A 220 1020 148 HOH HOH . H 5 HOH A 221 1021 245 HOH HOH . H 5 HOH A 222 1022 258 HOH HOH . H 5 HOH A 223 1023 194 HOH HOH . H 5 HOH A 224 1024 206 HOH HOH . H 5 HOH A 225 1025 130 HOH HOH . H 5 HOH A 226 1026 252 HOH HOH . H 5 HOH A 227 1027 264 HOH HOH . H 5 HOH A 228 1028 154 HOH HOH . H 5 HOH A 229 1029 170 HOH HOH . H 5 HOH A 230 1030 207 HOH HOH . H 5 HOH A 231 1031 230 HOH HOH . H 5 HOH A 232 1032 246 HOH HOH . H 5 HOH A 233 1033 180 HOH HOH . H 5 HOH A 234 1034 247 HOH HOH . H 5 HOH A 235 1035 204 HOH HOH . H 5 HOH A 236 1036 256 HOH HOH . H 5 HOH A 237 1037 227 HOH HOH . H 5 HOH A 238 1038 242 HOH HOH . H 5 HOH A 239 1039 69 HOH HOH . H 5 HOH A 240 1040 241 HOH HOH . H 5 HOH A 241 1041 231 HOH HOH . H 5 HOH A 242 1042 221 HOH HOH . H 5 HOH A 243 1043 50 HOH HOH . H 5 HOH A 244 1044 200 HOH HOH . H 5 HOH A 245 1045 186 HOH HOH . H 5 HOH A 246 1046 254 HOH HOH . H 5 HOH A 247 1047 192 HOH HOH . H 5 HOH A 248 1048 90 HOH HOH . H 5 HOH A 249 1049 244 HOH HOH . H 5 HOH A 250 1050 120 HOH HOH . H 5 HOH A 251 1051 205 HOH HOH . H 5 HOH A 252 1052 265 HOH HOH . H 5 HOH A 253 1053 234 HOH HOH . H 5 HOH A 254 1054 233 HOH HOH . H 5 HOH A 255 1055 83 HOH HOH . H 5 HOH A 256 1056 123 HOH HOH . H 5 HOH A 257 1057 262 HOH HOH . I 5 HOH B 1 101 226 HOH HOH . I 5 HOH B 2 102 149 HOH HOH . I 5 HOH B 3 103 49 HOH HOH . I 5 HOH B 4 104 91 HOH HOH . I 5 HOH B 5 105 203 HOH HOH . I 5 HOH B 6 106 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 3 -13.121 19.407 21.58 0.69 24.98 ? C1 MLI 703 A 1 HETATM 2 C C2 MLI . . . E 3 -14.096 20.578 21.631 0.69 27.1 ? C2 MLI 703 A 1 HETATM 3 C C3 MLI . . . E 3 -13.5 18.326 22.587 0.69 22.46 ? C3 MLI 703 A 1 HETATM 4 O O6 MLI . . . E 3 -15.24 20.474 21.114 0.69 18.57 ? O6 MLI 703 A 1 HETATM 5 O O7 MLI . . . E 3 -13.732 21.656 22.177 0.69 30.19 ? O7 MLI 703 A 1 HETATM 6 O O8 MLI . . . E 3 -12.796 17.286 22.636 0.69 19.94 ? O8 MLI 703 A 1 HETATM 7 O O9 MLI . . . E 3 -14.491 18.469 23.371 0.69 21.18 ? O9 MLI 703 A 1 HETATM 8 H H11 MLI . . . E 3 -13.132 19.026 20.688 0.69 29.96 ? H11 MLI 703 A 1 HETATM 9 H H12 MLI . . . E 3 -12.229 19.729 21.783 0.69 29.96 ? H12 MLI 703 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #