data_6QU6 # _model_server_result.job_id qaUzivImDa3mXm6_R1FhTQ _model_server_result.datetime_utc '2024-11-29 13:36:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QU6 # _exptl.entry_id 6QU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QU6 _cell.length_a 85.731 _cell.length_b 85.731 _cell.length_c 85.731 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 42.8655 42.8655 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 42.8655 0 -42.8655 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 315 n n C1 O1A SIA doub 316 n n C1 O1B SIA sing 317 n n C2 C3 SIA sing 318 n n C2 O2 SIA sing 319 n n C2 O6 SIA sing 320 n n C3 C4 SIA sing 321 n n C3 H32 SIA sing 322 n n C3 H31 SIA sing 323 n n C4 C5 SIA sing 324 n n C4 O4 SIA sing 325 n n C4 H4 SIA sing 326 n n C5 C6 SIA sing 327 n n C5 N5 SIA sing 328 n n C5 H5 SIA sing 329 n n C6 C7 SIA sing 330 n n C6 O6 SIA sing 331 n n C6 H6 SIA sing 332 n n C7 C8 SIA sing 333 n n C7 O7 SIA sing 334 n n C7 H7 SIA sing 335 n n C8 C9 SIA sing 336 n n C8 O8 SIA sing 337 n n C8 H8 SIA sing 338 n n C9 O9 SIA sing 339 n n C9 H92 SIA sing 340 n n C9 H91 SIA sing 341 n n C10 C11 SIA sing 342 n n C10 N5 SIA sing 343 n n C10 O10 SIA doub 344 n n C11 H111 SIA sing 345 n n C11 H113 SIA sing 346 n n C11 H112 SIA sing 347 n n N5 HN5 SIA sing 348 n n O1B HO1B SIA sing 349 n n O2 HO2 SIA sing 350 n n O4 HO4 SIA sing 351 n n O7 HO7 SIA sing 352 n n O8 HO8 SIA sing 353 n n O9 HO9 SIA sing 354 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QU6 _atom_sites.fract_transf_matrix[1][1] 0.011664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIA A 1 401 401 SIA SIA . C 3 SLB A 1 402 403 SLB SI2 . D 4 SO4 A 1 403 406 SO4 SO4 . E 5 EDO A 1 404 411 EDO EDO . F 5 EDO A 1 405 412 EDO EDO . G 6 PEG A 1 406 421 PEG PEG . H 7 HOH A 1 501 136 HOH HOH . H 7 HOH A 2 502 140 HOH HOH . H 7 HOH A 3 503 137 HOH HOH . H 7 HOH A 4 504 79 HOH HOH . H 7 HOH A 5 505 152 HOH HOH . H 7 HOH A 6 506 108 HOH HOH . H 7 HOH A 7 507 52 HOH HOH . H 7 HOH A 8 508 51 HOH HOH . H 7 HOH A 9 509 92 HOH HOH . H 7 HOH A 10 510 58 HOH HOH . H 7 HOH A 11 511 111 HOH HOH . H 7 HOH A 12 512 121 HOH HOH . H 7 HOH A 13 513 143 HOH HOH . H 7 HOH A 14 514 151 HOH HOH . H 7 HOH A 15 515 155 HOH HOH . H 7 HOH A 16 516 69 HOH HOH . H 7 HOH A 17 517 165 HOH HOH . H 7 HOH A 18 518 172 HOH HOH . H 7 HOH A 19 519 169 HOH HOH . H 7 HOH A 20 520 83 HOH HOH . H 7 HOH A 21 521 123 HOH HOH . H 7 HOH A 22 522 109 HOH HOH . H 7 HOH A 23 523 43 HOH HOH . H 7 HOH A 24 524 138 HOH HOH . H 7 HOH A 25 525 146 HOH HOH . H 7 HOH A 26 526 28 HOH HOH . H 7 HOH A 27 527 15 HOH HOH . H 7 HOH A 28 528 68 HOH HOH . H 7 HOH A 29 529 5 HOH HOH . H 7 HOH A 30 530 126 HOH HOH . H 7 HOH A 31 531 47 HOH HOH . H 7 HOH A 32 532 93 HOH HOH . H 7 HOH A 33 533 147 HOH HOH . H 7 HOH A 34 534 142 HOH HOH . H 7 HOH A 35 535 125 HOH HOH . H 7 HOH A 36 536 141 HOH HOH . H 7 HOH A 37 537 145 HOH HOH . H 7 HOH A 38 538 30 HOH HOH . H 7 HOH A 39 539 158 HOH HOH . H 7 HOH A 40 540 48 HOH HOH . H 7 HOH A 41 541 46 HOH HOH . H 7 HOH A 42 542 2 HOH HOH . H 7 HOH A 43 543 171 HOH HOH . H 7 HOH A 44 544 23 HOH HOH . H 7 HOH A 45 545 135 HOH HOH . H 7 HOH A 46 546 26 HOH HOH . H 7 HOH A 47 547 156 HOH HOH . H 7 HOH A 48 548 73 HOH HOH . H 7 HOH A 49 549 104 HOH HOH . H 7 HOH A 50 550 3 HOH HOH . H 7 HOH A 51 551 55 HOH HOH . H 7 HOH A 52 552 71 HOH HOH . H 7 HOH A 53 553 124 HOH HOH . H 7 HOH A 54 554 41 HOH HOH . H 7 HOH A 55 555 39 HOH HOH . H 7 HOH A 56 556 65 HOH HOH . H 7 HOH A 57 557 42 HOH HOH . H 7 HOH A 58 558 66 HOH HOH . H 7 HOH A 59 559 90 HOH HOH . H 7 HOH A 60 560 122 HOH HOH . H 7 HOH A 61 561 13 HOH HOH . H 7 HOH A 62 562 91 HOH HOH . H 7 HOH A 63 563 170 HOH HOH . H 7 HOH A 64 564 9 HOH HOH . H 7 HOH A 65 565 14 HOH HOH . H 7 HOH A 66 566 18 HOH HOH . H 7 HOH A 67 567 103 HOH HOH . H 7 HOH A 68 568 57 HOH HOH . H 7 HOH A 69 569 7 HOH HOH . H 7 HOH A 70 570 21 HOH HOH . H 7 HOH A 71 571 53 HOH HOH . H 7 HOH A 72 572 49 HOH HOH . H 7 HOH A 73 573 4 HOH HOH . H 7 HOH A 74 574 166 HOH HOH . H 7 HOH A 75 575 37 HOH HOH . H 7 HOH A 76 576 118 HOH HOH . H 7 HOH A 77 577 102 HOH HOH . H 7 HOH A 78 578 160 HOH HOH . H 7 HOH A 79 579 86 HOH HOH . H 7 HOH A 80 580 75 HOH HOH . H 7 HOH A 81 581 24 HOH HOH . H 7 HOH A 82 582 35 HOH HOH . H 7 HOH A 83 583 77 HOH HOH . H 7 HOH A 84 584 32 HOH HOH . H 7 HOH A 85 585 62 HOH HOH . H 7 HOH A 86 586 6 HOH HOH . H 7 HOH A 87 587 132 HOH HOH . H 7 HOH A 88 588 100 HOH HOH . H 7 HOH A 89 589 36 HOH HOH . H 7 HOH A 90 590 130 HOH HOH . H 7 HOH A 91 591 29 HOH HOH . H 7 HOH A 92 592 54 HOH HOH . H 7 HOH A 93 593 94 HOH HOH . H 7 HOH A 94 594 70 HOH HOH . H 7 HOH A 95 595 34 HOH HOH . H 7 HOH A 96 596 157 HOH HOH . H 7 HOH A 97 597 168 HOH HOH . H 7 HOH A 98 598 95 HOH HOH . H 7 HOH A 99 599 27 HOH HOH . H 7 HOH A 100 600 56 HOH HOH . H 7 HOH A 101 601 128 HOH HOH . H 7 HOH A 102 602 10 HOH HOH . H 7 HOH A 103 603 63 HOH HOH . H 7 HOH A 104 604 89 HOH HOH . H 7 HOH A 105 605 59 HOH HOH . H 7 HOH A 106 606 99 HOH HOH . H 7 HOH A 107 607 61 HOH HOH . H 7 HOH A 108 608 1 HOH HOH . H 7 HOH A 109 609 78 HOH HOH . H 7 HOH A 110 610 20 HOH HOH . H 7 HOH A 111 611 98 HOH HOH . H 7 HOH A 112 612 72 HOH HOH . H 7 HOH A 113 613 84 HOH HOH . H 7 HOH A 114 614 164 HOH HOH . H 7 HOH A 115 615 8 HOH HOH . H 7 HOH A 116 616 133 HOH HOH . H 7 HOH A 117 617 64 HOH HOH . H 7 HOH A 118 618 88 HOH HOH . H 7 HOH A 119 619 19 HOH HOH . H 7 HOH A 120 620 87 HOH HOH . H 7 HOH A 121 621 110 HOH HOH . H 7 HOH A 122 622 25 HOH HOH . H 7 HOH A 123 623 11 HOH HOH . H 7 HOH A 124 624 50 HOH HOH . H 7 HOH A 125 625 60 HOH HOH . H 7 HOH A 126 626 96 HOH HOH . H 7 HOH A 127 627 154 HOH HOH . H 7 HOH A 128 628 114 HOH HOH . H 7 HOH A 129 629 33 HOH HOH . H 7 HOH A 130 630 173 HOH HOH . H 7 HOH A 131 631 22 HOH HOH . H 7 HOH A 132 632 161 HOH HOH . H 7 HOH A 133 633 174 HOH HOH . H 7 HOH A 134 634 134 HOH HOH . H 7 HOH A 135 635 38 HOH HOH . H 7 HOH A 136 636 31 HOH HOH . H 7 HOH A 137 637 12 HOH HOH . H 7 HOH A 138 638 44 HOH HOH . H 7 HOH A 139 639 45 HOH HOH . H 7 HOH A 140 640 148 HOH HOH . H 7 HOH A 141 641 159 HOH HOH . H 7 HOH A 142 642 101 HOH HOH . H 7 HOH A 143 643 167 HOH HOH . H 7 HOH A 144 644 144 HOH HOH . H 7 HOH A 145 645 113 HOH HOH . H 7 HOH A 146 646 97 HOH HOH . H 7 HOH A 147 647 119 HOH HOH . H 7 HOH A 148 648 107 HOH HOH . H 7 HOH A 149 649 76 HOH HOH . H 7 HOH A 150 650 127 HOH HOH . H 7 HOH A 151 651 163 HOH HOH . H 7 HOH A 152 652 81 HOH HOH . H 7 HOH A 153 653 85 HOH HOH . H 7 HOH A 154 654 120 HOH HOH . H 7 HOH A 155 655 162 HOH HOH . H 7 HOH A 156 656 131 HOH HOH . H 7 HOH A 157 657 106 HOH HOH . H 7 HOH A 158 658 115 HOH HOH . H 7 HOH A 159 659 149 HOH HOH . H 7 HOH A 160 660 74 HOH HOH . H 7 HOH A 161 661 117 HOH HOH . H 7 HOH A 162 662 150 HOH HOH . H 7 HOH A 163 663 112 HOH HOH . H 7 HOH A 164 664 16 HOH HOH . H 7 HOH A 165 665 139 HOH HOH . H 7 HOH A 166 666 67 HOH HOH . H 7 HOH A 167 667 105 HOH HOH . H 7 HOH A 168 668 116 HOH HOH . H 7 HOH A 169 669 129 HOH HOH . H 7 HOH A 170 670 17 HOH HOH . H 7 HOH A 171 671 80 HOH HOH . H 7 HOH A 172 672 82 HOH HOH . H 7 HOH A 173 673 153 HOH HOH . H 7 HOH A 174 674 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . A . B 2 34.036 -0.167 -0.995 0.5 8.1 ? C1 SIA 401 A 1 HETATM 2 C C2 SIA . A . B 2 35.128 0.819 -1.133 0.5 7.52 ? C2 SIA 401 A 1 HETATM 3 C C3 SIA . A . B 2 35.04 1.273 -2.57 0.5 6.75 ? C3 SIA 401 A 1 HETATM 4 C C4 SIA . A . B 2 33.774 2.088 -2.781 0.5 6.34 ? C4 SIA 401 A 1 HETATM 5 C C5 SIA . A . B 2 33.735 3.237 -1.778 0.5 6.42 ? C5 SIA 401 A 1 HETATM 6 C C6 SIA . A . B 2 33.816 2.713 -0.343 0.5 6.96 ? C6 SIA 401 A 1 HETATM 7 C C7 SIA . A . B 2 33.92 3.865 0.648 0.5 7.54 ? C7 SIA 401 A 1 HETATM 8 C C8 SIA . A . B 2 33.674 3.703 2.18 0.5 8.01 ? C8 SIA 401 A 1 HETATM 9 C C9 SIA . A . B 2 33.49 2.298 2.681 0.5 7.83 ? C9 SIA 401 A 1 HETATM 10 C C10 SIA . A . B 2 32.605 5.277 -2.529 0.5 6.4 ? C10 SIA 401 A 1 HETATM 11 C C11 SIA . A . B 2 31.3 5.998 -2.691 0.5 6.51 ? C11 SIA 401 A 1 HETATM 12 N N5 SIA . A . B 2 32.549 4.059 -1.973 0.5 6.27 ? N5 SIA 401 A 1 HETATM 13 O O1A SIA . A . B 2 33.934 -0.997 -1.801 0.5 9.11 ? O1A SIA 401 A 1 HETATM 14 O O1B SIA . A . B 2 33.369 -0.114 -0.137 0.5 8.76 ? O1B SIA 401 A 1 HETATM 15 O O2 SIA . A . B 2 36.305 0.12 -0.854 0.5 8.3 ? O2 SIA 401 A 1 HETATM 16 O O4 SIA . A . B 2 33.771 2.615 -4.104 0.5 5.68 ? O4 SIA 401 A 1 HETATM 17 O O6 SIA . A . B 2 35.016 1.924 -0.218 0.5 7.34 ? O6 SIA 401 A 1 HETATM 18 O O7 SIA . A . B 2 35.059 4.671 0.354 0.5 7.79 ? O7 SIA 401 A 1 HETATM 19 O O8 SIA . A . B 2 34.518 4.444 3.061 0.5 8.81 ? O8 SIA 401 A 1 HETATM 20 O O9 SIA . A . B 2 32.793 1.462 1.788 0.5 6.84 ? O9 SIA 401 A 1 HETATM 21 O O10 SIA . A . B 2 33.668 5.757 -2.91 0.5 7.18 ? O10 SIA 401 A 1 HETATM 22 H H32 SIA . A . B 2 35.82 1.826 -2.783 0.5 6.75 ? H32 SIA 401 A 1 HETATM 23 H H31 SIA . A . B 2 35.021 0.489 -3.157 0.5 6.75 ? H31 SIA 401 A 1 HETATM 24 H H4 SIA . A . B 2 32.977 1.509 -2.641 0.5 6.34 ? H4 SIA 401 A 1 HETATM 25 H H5 SIA . A . B 2 34.532 3.808 -1.915 0.5 6.42 ? H5 SIA 401 A 1 HETATM 26 H H6 SIA . A . B 2 32.996 2.196 -0.147 0.5 6.96 ? H6 SIA 401 A 1 HETATM 27 H H7 SIA . A . B 2 33.09 4.418 0.576 0.5 7.54 ? H7 SIA 401 A 1 HETATM 28 H H8 SIA . A . B 2 32.751 3.988 2.396 0.5 8.01 ? H8 SIA 401 A 1 HETATM 29 H H92 SIA . A . B 2 32.994 2.313 3.535 0.5 7.83 ? H92 SIA 401 A 1 HETATM 30 H H91 SIA . A . B 2 34.373 1.89 2.855 0.5 7.83 ? H91 SIA 401 A 1 HETATM 31 H H111 SIA . A . B 2 31.453 6.854 -3.124 0.5 6.51 ? H111 SIA 401 A 1 HETATM 32 H H113 SIA . A . B 2 30.9 6.145 -1.819 0.5 6.51 ? H113 SIA 401 A 1 HETATM 33 H H112 SIA . A . B 2 30.7 5.464 -3.235 0.5 6.51 ? H112 SIA 401 A 1 HETATM 34 H HN5 SIA . A . B 2 31.772 3.749 -1.713 0.5 6.27 ? HN5 SIA 401 A 1 HETATM 35 H HO2 SIA . A . B 2 36.698 0.494 -0.21 0 8.3 ? HO2 SIA 401 A 1 HETATM 36 H HO4 SIA . A . B 2 33.748 3.455 -4.069 0 5.68 ? HO4 SIA 401 A 1 HETATM 37 H HO7 SIA . A . B 2 35.459 4.348 -0.321 0 7.79 ? HO7 SIA 401 A 1 HETATM 38 H HO8 SIA . A . B 2 34.297 4.281 3.863 0 8.81 ? HO8 SIA 401 A 1 HETATM 39 H HO9 SIA . A . B 2 32.73 0.694 2.138 0 6.84 ? HO9 SIA 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #