data_6QU6 # _model_server_result.job_id UgrElBIJ9ewnuP39FM5N-Q _model_server_result.datetime_utc '2025-02-27 11:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6QU6 # _exptl.entry_id 6QU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-beta-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QU6 _cell.length_a 85.731 _cell.length_b 85.731 _cell.length_c 85.731 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 42.8655 42.8655 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 42.8655 0 -42.8655 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SLB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-beta-neuraminic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;O-sialic acid;5-N-ACETYL-BETA-D-NEURAMINIC ACID;BETA-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SLB sing 355 n n C1 O1A SLB doub 356 n n C1 O1B SLB sing 357 n n C2 C3 SLB sing 358 n n C2 O2 SLB sing 359 n n C2 O6 SLB sing 360 n n C3 C4 SLB sing 361 n n C3 H32 SLB sing 362 n n C3 H31 SLB sing 363 n n C4 C5 SLB sing 364 n n C4 O4 SLB sing 365 n n C4 H4 SLB sing 366 n n C5 C6 SLB sing 367 n n C5 N5 SLB sing 368 n n C5 H5 SLB sing 369 n n C6 C7 SLB sing 370 n n C6 O6 SLB sing 371 n n C6 H6 SLB sing 372 n n C7 C8 SLB sing 373 n n C7 O7 SLB sing 374 n n C7 H7 SLB sing 375 n n C8 C9 SLB sing 376 n n C8 O8 SLB sing 377 n n C8 H8 SLB sing 378 n n C9 O9 SLB sing 379 n n C9 H92 SLB sing 380 n n C9 H91 SLB sing 381 n n C10 C11 SLB sing 382 n n C10 N5 SLB sing 383 n n C10 O10 SLB doub 384 n n C11 H111 SLB sing 385 n n C11 H113 SLB sing 386 n n C11 H112 SLB sing 387 n n N5 HN5 SLB sing 388 n n O1B HO1B SLB sing 389 n n O2 HO2 SLB sing 390 n n O4 HO4 SLB sing 391 n n O7 HO7 SLB sing 392 n n O8 HO8 SLB sing 393 n n O9 HO9 SLB sing 394 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SLB DNeup5Acb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SLB 'N-acetyl-b-D-neuraminic acid' 'COMMON NAME' GMML 1 SLB b-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SLB Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QU6 _atom_sites.fract_transf_matrix[1][1] 0.011664 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIA A 1 401 401 SIA SIA . C 3 SLB A 1 402 403 SLB SI2 . D 4 SO4 A 1 403 406 SO4 SO4 . E 5 EDO A 1 404 411 EDO EDO . F 5 EDO A 1 405 412 EDO EDO . G 6 PEG A 1 406 421 PEG PEG . H 7 HOH A 1 501 136 HOH HOH . H 7 HOH A 2 502 140 HOH HOH . H 7 HOH A 3 503 137 HOH HOH . H 7 HOH A 4 504 79 HOH HOH . H 7 HOH A 5 505 152 HOH HOH . H 7 HOH A 6 506 108 HOH HOH . H 7 HOH A 7 507 52 HOH HOH . H 7 HOH A 8 508 51 HOH HOH . H 7 HOH A 9 509 92 HOH HOH . H 7 HOH A 10 510 58 HOH HOH . H 7 HOH A 11 511 111 HOH HOH . H 7 HOH A 12 512 121 HOH HOH . H 7 HOH A 13 513 143 HOH HOH . H 7 HOH A 14 514 151 HOH HOH . H 7 HOH A 15 515 155 HOH HOH . H 7 HOH A 16 516 69 HOH HOH . H 7 HOH A 17 517 165 HOH HOH . H 7 HOH A 18 518 172 HOH HOH . H 7 HOH A 19 519 169 HOH HOH . H 7 HOH A 20 520 83 HOH HOH . H 7 HOH A 21 521 123 HOH HOH . H 7 HOH A 22 522 109 HOH HOH . H 7 HOH A 23 523 43 HOH HOH . H 7 HOH A 24 524 138 HOH HOH . H 7 HOH A 25 525 146 HOH HOH . H 7 HOH A 26 526 28 HOH HOH . H 7 HOH A 27 527 15 HOH HOH . H 7 HOH A 28 528 68 HOH HOH . H 7 HOH A 29 529 5 HOH HOH . H 7 HOH A 30 530 126 HOH HOH . H 7 HOH A 31 531 47 HOH HOH . H 7 HOH A 32 532 93 HOH HOH . H 7 HOH A 33 533 147 HOH HOH . H 7 HOH A 34 534 142 HOH HOH . H 7 HOH A 35 535 125 HOH HOH . H 7 HOH A 36 536 141 HOH HOH . H 7 HOH A 37 537 145 HOH HOH . H 7 HOH A 38 538 30 HOH HOH . H 7 HOH A 39 539 158 HOH HOH . H 7 HOH A 40 540 48 HOH HOH . H 7 HOH A 41 541 46 HOH HOH . H 7 HOH A 42 542 2 HOH HOH . H 7 HOH A 43 543 171 HOH HOH . H 7 HOH A 44 544 23 HOH HOH . H 7 HOH A 45 545 135 HOH HOH . H 7 HOH A 46 546 26 HOH HOH . H 7 HOH A 47 547 156 HOH HOH . H 7 HOH A 48 548 73 HOH HOH . H 7 HOH A 49 549 104 HOH HOH . H 7 HOH A 50 550 3 HOH HOH . H 7 HOH A 51 551 55 HOH HOH . H 7 HOH A 52 552 71 HOH HOH . H 7 HOH A 53 553 124 HOH HOH . H 7 HOH A 54 554 41 HOH HOH . H 7 HOH A 55 555 39 HOH HOH . H 7 HOH A 56 556 65 HOH HOH . H 7 HOH A 57 557 42 HOH HOH . H 7 HOH A 58 558 66 HOH HOH . H 7 HOH A 59 559 90 HOH HOH . H 7 HOH A 60 560 122 HOH HOH . H 7 HOH A 61 561 13 HOH HOH . H 7 HOH A 62 562 91 HOH HOH . H 7 HOH A 63 563 170 HOH HOH . H 7 HOH A 64 564 9 HOH HOH . H 7 HOH A 65 565 14 HOH HOH . H 7 HOH A 66 566 18 HOH HOH . H 7 HOH A 67 567 103 HOH HOH . H 7 HOH A 68 568 57 HOH HOH . H 7 HOH A 69 569 7 HOH HOH . H 7 HOH A 70 570 21 HOH HOH . H 7 HOH A 71 571 53 HOH HOH . H 7 HOH A 72 572 49 HOH HOH . H 7 HOH A 73 573 4 HOH HOH . H 7 HOH A 74 574 166 HOH HOH . H 7 HOH A 75 575 37 HOH HOH . H 7 HOH A 76 576 118 HOH HOH . H 7 HOH A 77 577 102 HOH HOH . H 7 HOH A 78 578 160 HOH HOH . H 7 HOH A 79 579 86 HOH HOH . H 7 HOH A 80 580 75 HOH HOH . H 7 HOH A 81 581 24 HOH HOH . H 7 HOH A 82 582 35 HOH HOH . H 7 HOH A 83 583 77 HOH HOH . H 7 HOH A 84 584 32 HOH HOH . H 7 HOH A 85 585 62 HOH HOH . H 7 HOH A 86 586 6 HOH HOH . H 7 HOH A 87 587 132 HOH HOH . H 7 HOH A 88 588 100 HOH HOH . H 7 HOH A 89 589 36 HOH HOH . H 7 HOH A 90 590 130 HOH HOH . H 7 HOH A 91 591 29 HOH HOH . H 7 HOH A 92 592 54 HOH HOH . H 7 HOH A 93 593 94 HOH HOH . H 7 HOH A 94 594 70 HOH HOH . H 7 HOH A 95 595 34 HOH HOH . H 7 HOH A 96 596 157 HOH HOH . H 7 HOH A 97 597 168 HOH HOH . H 7 HOH A 98 598 95 HOH HOH . H 7 HOH A 99 599 27 HOH HOH . H 7 HOH A 100 600 56 HOH HOH . H 7 HOH A 101 601 128 HOH HOH . H 7 HOH A 102 602 10 HOH HOH . H 7 HOH A 103 603 63 HOH HOH . H 7 HOH A 104 604 89 HOH HOH . H 7 HOH A 105 605 59 HOH HOH . H 7 HOH A 106 606 99 HOH HOH . H 7 HOH A 107 607 61 HOH HOH . H 7 HOH A 108 608 1 HOH HOH . H 7 HOH A 109 609 78 HOH HOH . H 7 HOH A 110 610 20 HOH HOH . H 7 HOH A 111 611 98 HOH HOH . H 7 HOH A 112 612 72 HOH HOH . H 7 HOH A 113 613 84 HOH HOH . H 7 HOH A 114 614 164 HOH HOH . H 7 HOH A 115 615 8 HOH HOH . H 7 HOH A 116 616 133 HOH HOH . H 7 HOH A 117 617 64 HOH HOH . H 7 HOH A 118 618 88 HOH HOH . H 7 HOH A 119 619 19 HOH HOH . H 7 HOH A 120 620 87 HOH HOH . H 7 HOH A 121 621 110 HOH HOH . H 7 HOH A 122 622 25 HOH HOH . H 7 HOH A 123 623 11 HOH HOH . H 7 HOH A 124 624 50 HOH HOH . H 7 HOH A 125 625 60 HOH HOH . H 7 HOH A 126 626 96 HOH HOH . H 7 HOH A 127 627 154 HOH HOH . H 7 HOH A 128 628 114 HOH HOH . H 7 HOH A 129 629 33 HOH HOH . H 7 HOH A 130 630 173 HOH HOH . H 7 HOH A 131 631 22 HOH HOH . H 7 HOH A 132 632 161 HOH HOH . H 7 HOH A 133 633 174 HOH HOH . H 7 HOH A 134 634 134 HOH HOH . H 7 HOH A 135 635 38 HOH HOH . H 7 HOH A 136 636 31 HOH HOH . H 7 HOH A 137 637 12 HOH HOH . H 7 HOH A 138 638 44 HOH HOH . H 7 HOH A 139 639 45 HOH HOH . H 7 HOH A 140 640 148 HOH HOH . H 7 HOH A 141 641 159 HOH HOH . H 7 HOH A 142 642 101 HOH HOH . H 7 HOH A 143 643 167 HOH HOH . H 7 HOH A 144 644 144 HOH HOH . H 7 HOH A 145 645 113 HOH HOH . H 7 HOH A 146 646 97 HOH HOH . H 7 HOH A 147 647 119 HOH HOH . H 7 HOH A 148 648 107 HOH HOH . H 7 HOH A 149 649 76 HOH HOH . H 7 HOH A 150 650 127 HOH HOH . H 7 HOH A 151 651 163 HOH HOH . H 7 HOH A 152 652 81 HOH HOH . H 7 HOH A 153 653 85 HOH HOH . H 7 HOH A 154 654 120 HOH HOH . H 7 HOH A 155 655 162 HOH HOH . H 7 HOH A 156 656 131 HOH HOH . H 7 HOH A 157 657 106 HOH HOH . H 7 HOH A 158 658 115 HOH HOH . H 7 HOH A 159 659 149 HOH HOH . H 7 HOH A 160 660 74 HOH HOH . H 7 HOH A 161 661 117 HOH HOH . H 7 HOH A 162 662 150 HOH HOH . H 7 HOH A 163 663 112 HOH HOH . H 7 HOH A 164 664 16 HOH HOH . H 7 HOH A 165 665 139 HOH HOH . H 7 HOH A 166 666 67 HOH HOH . H 7 HOH A 167 667 105 HOH HOH . H 7 HOH A 168 668 116 HOH HOH . H 7 HOH A 169 669 129 HOH HOH . H 7 HOH A 170 670 17 HOH HOH . H 7 HOH A 171 671 80 HOH HOH . H 7 HOH A 172 672 82 HOH HOH . H 7 HOH A 173 673 153 HOH HOH . H 7 HOH A 174 674 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SLB . B . C 3 36.183 -0.048 -0.761 0.5 3.82 ? C1 SLB 402 A 1 HETATM 2 C C2 SLB . B . C 3 34.91 0.716 -1.017 0.5 3.56 ? C2 SLB 402 A 1 HETATM 3 C C3 SLB . B . C 3 34.892 1.14 -2.482 0.5 3.36 ? C3 SLB 402 A 1 HETATM 4 C C4 SLB . B . C 3 33.723 2.082 -2.759 0.5 3.06 ? C4 SLB 402 A 1 HETATM 5 C C5 SLB . B . C 3 33.729 3.245 -1.764 0.5 2.77 ? C5 SLB 402 A 1 HETATM 6 C C6 SLB . B . C 3 33.8 2.72 -0.334 0.5 2.99 ? C6 SLB 402 A 1 HETATM 7 C C7 SLB . B . C 3 33.947 3.822 0.7 0.5 3.45 ? C7 SLB 402 A 1 HETATM 8 C C8 SLB . B . C 3 34.237 3.215 2.077 0.5 4 ? C8 SLB 402 A 1 HETATM 9 C C9 SLB . B . C 3 34.471 4.266 3.168 0.5 4.56 ? C9 SLB 402 A 1 HETATM 10 C C10 SLB . B . C 3 32.606 5.278 -2.532 0.5 2.57 ? C10 SLB 402 A 1 HETATM 11 C C11 SLB . B . C 3 31.299 6.001 -2.697 0.5 2.67 ? C11 SLB 402 A 1 HETATM 12 N N5 SLB . B . C 3 32.547 4.06 -1.962 0.5 2.55 ? N5 SLB 402 A 1 HETATM 13 O O1A SLB . B . C 3 36.144 -1.297 -0.787 0.5 4.26 ? O1A SLB 402 A 1 HETATM 14 O O1B SLB . B . C 3 37.222 0.608 -0.552 0.5 4.33 ? O1B SLB 402 A 1 HETATM 15 O O2 SLB . B . C 3 33.767 -0.09 -0.652 0.5 4.05 ? O2 SLB 402 A 1 HETATM 16 O O4 SLB . B . C 3 33.778 2.609 -4.088 0.5 3.25 ? O4 SLB 402 A 1 HETATM 17 O O6 SLB . B . C 3 34.961 1.906 -0.232 0.5 3.15 ? O6 SLB 402 A 1 HETATM 18 O O7 SLB . B . C 3 35.033 4.663 0.332 0.5 3.45 ? O7 SLB 402 A 1 HETATM 19 O O8 SLB . B . C 3 33.178 2.326 2.409 0.5 4.49 ? O8 SLB 402 A 1 HETATM 20 O O9 SLB . B . C 3 33.515 5.311 3.189 0.5 4.99 ? O9 SLB 402 A 1 HETATM 21 O O10 SLB . B . C 3 33.669 5.751 -2.909 0.5 3.01 ? O10 SLB 402 A 1 HETATM 22 H H32 SLB . B . C 3 34.797 0.25 -3.104 0.5 3.36 ? H32 SLB 402 A 1 HETATM 23 H H31 SLB . B . C 3 35.829 1.646 -2.713 0.5 3.36 ? H31 SLB 402 A 1 HETATM 24 H H4 SLB . B . C 3 32.788 1.518 -2.635 0.5 3.06 ? H4 SLB 402 A 1 HETATM 25 H H5 SLB . B . C 3 34.619 3.862 -1.95 0.5 2.77 ? H5 SLB 402 A 1 HETATM 26 H H6 SLB . B . C 3 32.908 2.113 -0.126 0.5 2.99 ? H6 SLB 402 A 1 HETATM 27 H H7 SLB . B . C 3 33.016 4.406 0.717 0.5 3.45 ? H7 SLB 402 A 1 HETATM 28 H H8 SLB . B . C 3 35.186 2.663 2.019 0.5 4 ? H8 SLB 402 A 1 HETATM 29 H H92 SLB . B . C 3 35.448 4.731 3.022 0.5 4.56 ? H92 SLB 402 A 1 HETATM 30 H H91 SLB . B . C 3 34.439 3.786 4.148 0.5 4.56 ? H91 SLB 402 A 1 HETATM 31 H H111 SLB . B . C 3 31.332 6.917 -2.165 0.5 2.67 ? H111 SLB 402 A 1 HETATM 32 H H113 SLB . B . C 3 31.131 6.196 -3.724 0.5 2.67 ? H113 SLB 402 A 1 HETATM 33 H H112 SLB . B . C 3 30.513 5.401 -2.318 0.5 2.67 ? H112 SLB 402 A 1 HETATM 34 H HN5 SLB . B . C 3 31.654 3.696 -1.66 0.5 2.54 ? HN5 SLB 402 A 1 HETATM 35 H HO2 SLB . B . C 3 34.069 -0.947 -0.322 0 4.05 ? HO2 SLB 402 A 1 HETATM 36 H HO4 SLB . B . C 3 34.554 2.255 -4.543 0 3.25 ? HO4 SLB 402 A 1 HETATM 37 H HO7 SLB . B . C 3 35.846 4.141 0.295 0 3.45 ? HO7 SLB 402 A 1 HETATM 38 H HO8 SLB . B . C 3 32.343 2.814 2.432 0 4.49 ? HO8 SLB 402 A 1 HETATM 39 H HO9 SLB . B . C 3 33.729 5.93 3.9 0 4.99 ? HO9 SLB 402 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #