data_6QU8 # _model_server_result.job_id i6H7Zsm_XrM7V2FghIIQ4g _model_server_result.datetime_utc '2024-11-22 19:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QU8 # _exptl.entry_id 6QU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QU8 _cell.length_a 85.92 _cell.length_b 85.92 _cell.length_c 85.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 299 n n C1 O1A SIA doub 300 n n C1 O1B SIA sing 301 n n C2 C3 SIA sing 302 n n C2 O2 SIA sing 303 n n C2 O6 SIA sing 304 n n C3 C4 SIA sing 305 n n C3 H32 SIA sing 306 n n C3 H31 SIA sing 307 n n C4 C5 SIA sing 308 n n C4 O4 SIA sing 309 n n C4 H4 SIA sing 310 n n C5 C6 SIA sing 311 n n C5 N5 SIA sing 312 n n C5 H5 SIA sing 313 n n C6 C7 SIA sing 314 n n C6 O6 SIA sing 315 n n C6 H6 SIA sing 316 n n C7 C8 SIA sing 317 n n C7 O7 SIA sing 318 n n C7 H7 SIA sing 319 n n C8 C9 SIA sing 320 n n C8 O8 SIA sing 321 n n C8 H8 SIA sing 322 n n C9 O9 SIA sing 323 n n C9 H92 SIA sing 324 n n C9 H91 SIA sing 325 n n C10 C11 SIA sing 326 n n C10 N5 SIA sing 327 n n C10 O10 SIA doub 328 n n C11 H111 SIA sing 329 n n C11 H113 SIA sing 330 n n C11 H112 SIA sing 331 n n N5 HN5 SIA sing 332 n n O1B HO1B SIA sing 333 n n O2 HO2 SIA sing 334 n n O4 HO4 SIA sing 335 n n O7 HO7 SIA sing 336 n n O8 HO8 SIA sing 337 n n O9 HO9 SIA sing 338 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QU8 _atom_sites.fract_transf_matrix[1][1] 0.011639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIA A 1 401 401 SIA SIA . C 3 SLB A 1 402 403 SLB SI2 . D 4 EDO A 1 403 405 EDO EDO . E 4 EDO A 1 404 407 EDO EDO . F 4 EDO A 1 405 409 EDO EDO . G 5 HOH A 1 501 28 HOH HOH . G 5 HOH A 2 502 123 HOH HOH . G 5 HOH A 3 503 117 HOH HOH . G 5 HOH A 4 504 118 HOH HOH . G 5 HOH A 5 505 154 HOH HOH . G 5 HOH A 6 506 112 HOH HOH . G 5 HOH A 7 507 34 HOH HOH . G 5 HOH A 8 508 104 HOH HOH . G 5 HOH A 9 509 147 HOH HOH . G 5 HOH A 10 510 101 HOH HOH . G 5 HOH A 11 511 23 HOH HOH . G 5 HOH A 12 512 141 HOH HOH . G 5 HOH A 13 513 151 HOH HOH . G 5 HOH A 14 514 82 HOH HOH . G 5 HOH A 15 515 63 HOH HOH . G 5 HOH A 16 516 89 HOH HOH . G 5 HOH A 17 517 124 HOH HOH . G 5 HOH A 18 518 55 HOH HOH . G 5 HOH A 19 519 83 HOH HOH . G 5 HOH A 20 520 138 HOH HOH . G 5 HOH A 21 521 73 HOH HOH . G 5 HOH A 22 522 2 HOH HOH . G 5 HOH A 23 523 139 HOH HOH . G 5 HOH A 24 524 20 HOH HOH . G 5 HOH A 25 525 142 HOH HOH . G 5 HOH A 26 526 135 HOH HOH . G 5 HOH A 27 527 109 HOH HOH . G 5 HOH A 28 528 11 HOH HOH . G 5 HOH A 29 529 21 HOH HOH . G 5 HOH A 30 530 136 HOH HOH . G 5 HOH A 31 531 26 HOH HOH . G 5 HOH A 32 532 88 HOH HOH . G 5 HOH A 33 533 47 HOH HOH . G 5 HOH A 34 534 125 HOH HOH . G 5 HOH A 35 535 29 HOH HOH . G 5 HOH A 36 536 113 HOH HOH . G 5 HOH A 37 537 84 HOH HOH . G 5 HOH A 38 538 97 HOH HOH . G 5 HOH A 39 539 56 HOH HOH . G 5 HOH A 40 540 33 HOH HOH . G 5 HOH A 41 541 30 HOH HOH . G 5 HOH A 42 542 46 HOH HOH . G 5 HOH A 43 543 18 HOH HOH . G 5 HOH A 44 544 85 HOH HOH . G 5 HOH A 45 545 72 HOH HOH . G 5 HOH A 46 546 35 HOH HOH . G 5 HOH A 47 547 15 HOH HOH . G 5 HOH A 48 548 67 HOH HOH . G 5 HOH A 49 549 126 HOH HOH . G 5 HOH A 50 550 127 HOH HOH . G 5 HOH A 51 551 43 HOH HOH . G 5 HOH A 52 552 3 HOH HOH . G 5 HOH A 53 553 78 HOH HOH . G 5 HOH A 54 554 103 HOH HOH . G 5 HOH A 55 555 31 HOH HOH . G 5 HOH A 56 556 6 HOH HOH . G 5 HOH A 57 557 115 HOH HOH . G 5 HOH A 58 558 157 HOH HOH . G 5 HOH A 59 559 98 HOH HOH . G 5 HOH A 60 560 44 HOH HOH . G 5 HOH A 61 561 54 HOH HOH . G 5 HOH A 62 562 81 HOH HOH . G 5 HOH A 63 563 100 HOH HOH . G 5 HOH A 64 564 130 HOH HOH . G 5 HOH A 65 565 10 HOH HOH . G 5 HOH A 66 566 4 HOH HOH . G 5 HOH A 67 567 16 HOH HOH . G 5 HOH A 68 568 36 HOH HOH . G 5 HOH A 69 569 58 HOH HOH . G 5 HOH A 70 570 40 HOH HOH . G 5 HOH A 71 571 59 HOH HOH . G 5 HOH A 72 572 14 HOH HOH . G 5 HOH A 73 573 152 HOH HOH . G 5 HOH A 74 574 42 HOH HOH . G 5 HOH A 75 575 66 HOH HOH . G 5 HOH A 76 576 92 HOH HOH . G 5 HOH A 77 577 17 HOH HOH . G 5 HOH A 78 578 1 HOH HOH . G 5 HOH A 79 579 48 HOH HOH . G 5 HOH A 80 580 24 HOH HOH . G 5 HOH A 81 581 134 HOH HOH . G 5 HOH A 82 582 52 HOH HOH . G 5 HOH A 83 583 87 HOH HOH . G 5 HOH A 84 584 13 HOH HOH . G 5 HOH A 85 585 22 HOH HOH . G 5 HOH A 86 586 105 HOH HOH . G 5 HOH A 87 587 75 HOH HOH . G 5 HOH A 88 588 86 HOH HOH . G 5 HOH A 89 589 27 HOH HOH . G 5 HOH A 90 590 49 HOH HOH . G 5 HOH A 91 591 74 HOH HOH . G 5 HOH A 92 592 94 HOH HOH . G 5 HOH A 93 593 37 HOH HOH . G 5 HOH A 94 594 5 HOH HOH . G 5 HOH A 95 595 95 HOH HOH . G 5 HOH A 96 596 32 HOH HOH . G 5 HOH A 97 597 53 HOH HOH . G 5 HOH A 98 598 51 HOH HOH . G 5 HOH A 99 599 39 HOH HOH . G 5 HOH A 100 600 128 HOH HOH . G 5 HOH A 101 601 60 HOH HOH . G 5 HOH A 102 602 41 HOH HOH . G 5 HOH A 103 603 62 HOH HOH . G 5 HOH A 104 604 137 HOH HOH . G 5 HOH A 105 605 71 HOH HOH . G 5 HOH A 106 606 65 HOH HOH . G 5 HOH A 107 607 129 HOH HOH . G 5 HOH A 108 608 76 HOH HOH . G 5 HOH A 109 609 50 HOH HOH . G 5 HOH A 110 610 68 HOH HOH . G 5 HOH A 111 611 144 HOH HOH . G 5 HOH A 112 612 99 HOH HOH . G 5 HOH A 113 613 9 HOH HOH . G 5 HOH A 114 614 38 HOH HOH . G 5 HOH A 115 615 57 HOH HOH . G 5 HOH A 116 616 150 HOH HOH . G 5 HOH A 117 617 102 HOH HOH . G 5 HOH A 118 618 45 HOH HOH . G 5 HOH A 119 619 12 HOH HOH . G 5 HOH A 120 620 93 HOH HOH . G 5 HOH A 121 621 106 HOH HOH . G 5 HOH A 122 622 155 HOH HOH . G 5 HOH A 123 623 148 HOH HOH . G 5 HOH A 124 624 116 HOH HOH . G 5 HOH A 125 625 19 HOH HOH . G 5 HOH A 126 626 25 HOH HOH . G 5 HOH A 127 627 69 HOH HOH . G 5 HOH A 128 628 114 HOH HOH . G 5 HOH A 129 629 132 HOH HOH . G 5 HOH A 130 630 158 HOH HOH . G 5 HOH A 131 631 70 HOH HOH . G 5 HOH A 132 632 156 HOH HOH . G 5 HOH A 133 633 133 HOH HOH . G 5 HOH A 134 634 64 HOH HOH . G 5 HOH A 135 635 77 HOH HOH . G 5 HOH A 136 636 122 HOH HOH . G 5 HOH A 137 637 107 HOH HOH . G 5 HOH A 138 638 146 HOH HOH . G 5 HOH A 139 639 120 HOH HOH . G 5 HOH A 140 640 80 HOH HOH . G 5 HOH A 141 641 91 HOH HOH . G 5 HOH A 142 642 96 HOH HOH . G 5 HOH A 143 643 90 HOH HOH . G 5 HOH A 144 644 121 HOH HOH . G 5 HOH A 145 645 7 HOH HOH . G 5 HOH A 146 646 153 HOH HOH . G 5 HOH A 147 647 140 HOH HOH . G 5 HOH A 148 648 8 HOH HOH . G 5 HOH A 149 649 149 HOH HOH . G 5 HOH A 150 650 131 HOH HOH . G 5 HOH A 151 651 110 HOH HOH . G 5 HOH A 152 652 61 HOH HOH . G 5 HOH A 153 653 108 HOH HOH . G 5 HOH A 154 654 79 HOH HOH . G 5 HOH A 155 655 143 HOH HOH . G 5 HOH A 156 656 145 HOH HOH . G 5 HOH A 157 657 111 HOH HOH . G 5 HOH A 158 658 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . A . B 2 21.672 12.627 20.434 0.5 37.18 ? C1 SIA 401 A 1 HETATM 2 C C2 SIA . A . B 2 20.651 13.716 20.288 0.5 31.43 ? C2 SIA 401 A 1 HETATM 3 C C3 SIA . A . B 2 20.129 13.67 18.867 0.5 26.75 ? C3 SIA 401 A 1 HETATM 4 C C4 SIA . A . B 2 19.33 12.4 18.615 0.5 21.79 ? C4 SIA 401 A 1 HETATM 5 C C5 SIA . A . B 2 18.248 12.279 19.682 0.5 19.16 ? C5 SIA 401 A 1 HETATM 6 C C6 SIA . A . B 2 18.901 12.263 21.067 0.5 22.49 ? C6 SIA 401 A 1 HETATM 7 C C7 SIA . A . B 2 17.886 12.245 22.189 0.5 28.22 ? C7 SIA 401 A 1 HETATM 8 C C8 SIA . A . B 2 18.643 12.311 23.528 0.5 32.38 ? C8 SIA 401 A 1 HETATM 9 C C9 SIA . A . B 2 17.772 12.035 24.727 0.5 38.59 ? C9 SIA 401 A 1 HETATM 10 C C10 SIA . A . B 2 16.206 11.15 18.943 0.5 16.63 ? C10 SIA 401 A 1 HETATM 11 C C11 SIA . A . B 2 15.501 9.84 18.783 0.5 18.68 ? C11 SIA 401 A 1 HETATM 12 N N5 SIA . A . B 2 17.416 11.098 19.496 0.5 17.72 ? N5 SIA 401 A 1 HETATM 13 O O1A SIA . A . B 2 22.502 12.562 19.637 0.5 46.96 ? O1A SIA 401 A 1 HETATM 14 O O1B SIA . A . B 2 21.634 11.867 21.299 0.5 41.63 ? O1B SIA 401 A 1 HETATM 15 O O2 SIA . A . B 2 21.237 14.955 20.582 0.5 40.61 ? O2 SIA 401 A 1 HETATM 16 O O4 SIA . A . B 2 18.744 12.443 17.316 0.5 23.39 ? O4 SIA 401 A 1 HETATM 17 O O6 SIA . A . B 2 19.61 13.501 21.245 0.5 28.12 ? O6 SIA 401 A 1 HETATM 18 O O7 SIA . A . B 2 16.979 13.339 22.035 0.5 29.54 ? O7 SIA 401 A 1 HETATM 19 O O8 SIA . A . B 2 19.686 11.355 23.512 0.5 35.51 ? O8 SIA 401 A 1 HETATM 20 O O9 SIA . A . B 2 16.517 12.692 24.614 0.5 37.68 ? O9 SIA 401 A 1 HETATM 21 O O10 SIA . A . B 2 15.714 12.2 18.564 0.5 23.74 ? O10 SIA 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #