data_6QU8 # _model_server_result.job_id xD0aPcTSV_KL0cm5NuPu_g _model_server_result.datetime_utc '2024-11-22 19:39:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6QU8 # _exptl.entry_id 6QU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-beta-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QU8 _cell.length_a 85.92 _cell.length_b 85.92 _cell.length_c 85.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SLB _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-beta-neuraminic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;O-sialic acid;5-N-ACETYL-BETA-D-NEURAMINIC ACID;BETA-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SLB sing 339 n n C1 O1A SLB doub 340 n n C1 O1B SLB sing 341 n n C2 C3 SLB sing 342 n n C2 O2 SLB sing 343 n n C2 O6 SLB sing 344 n n C3 C4 SLB sing 345 n n C3 H32 SLB sing 346 n n C3 H31 SLB sing 347 n n C4 C5 SLB sing 348 n n C4 O4 SLB sing 349 n n C4 H4 SLB sing 350 n n C5 C6 SLB sing 351 n n C5 N5 SLB sing 352 n n C5 H5 SLB sing 353 n n C6 C7 SLB sing 354 n n C6 O6 SLB sing 355 n n C6 H6 SLB sing 356 n n C7 C8 SLB sing 357 n n C7 O7 SLB sing 358 n n C7 H7 SLB sing 359 n n C8 C9 SLB sing 360 n n C8 O8 SLB sing 361 n n C8 H8 SLB sing 362 n n C9 O9 SLB sing 363 n n C9 H92 SLB sing 364 n n C9 H91 SLB sing 365 n n C10 C11 SLB sing 366 n n C10 N5 SLB sing 367 n n C10 O10 SLB doub 368 n n C11 H111 SLB sing 369 n n C11 H113 SLB sing 370 n n C11 H112 SLB sing 371 n n N5 HN5 SLB sing 372 n n O1B HO1B SLB sing 373 n n O2 HO2 SLB sing 374 n n O4 HO4 SLB sing 375 n n O7 HO7 SLB sing 376 n n O8 HO8 SLB sing 377 n n O9 HO9 SLB sing 378 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SLB DNeup5Acb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SLB 'N-acetyl-b-D-neuraminic acid' 'COMMON NAME' GMML 1 SLB b-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SLB Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QU8 _atom_sites.fract_transf_matrix[1][1] 0.011639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIA A 1 401 401 SIA SIA . C 3 SLB A 1 402 403 SLB SI2 . D 4 EDO A 1 403 405 EDO EDO . E 4 EDO A 1 404 407 EDO EDO . F 4 EDO A 1 405 409 EDO EDO . G 5 HOH A 1 501 28 HOH HOH . G 5 HOH A 2 502 123 HOH HOH . G 5 HOH A 3 503 117 HOH HOH . G 5 HOH A 4 504 118 HOH HOH . G 5 HOH A 5 505 154 HOH HOH . G 5 HOH A 6 506 112 HOH HOH . G 5 HOH A 7 507 34 HOH HOH . G 5 HOH A 8 508 104 HOH HOH . G 5 HOH A 9 509 147 HOH HOH . G 5 HOH A 10 510 101 HOH HOH . G 5 HOH A 11 511 23 HOH HOH . G 5 HOH A 12 512 141 HOH HOH . G 5 HOH A 13 513 151 HOH HOH . G 5 HOH A 14 514 82 HOH HOH . G 5 HOH A 15 515 63 HOH HOH . G 5 HOH A 16 516 89 HOH HOH . G 5 HOH A 17 517 124 HOH HOH . G 5 HOH A 18 518 55 HOH HOH . G 5 HOH A 19 519 83 HOH HOH . G 5 HOH A 20 520 138 HOH HOH . G 5 HOH A 21 521 73 HOH HOH . G 5 HOH A 22 522 2 HOH HOH . G 5 HOH A 23 523 139 HOH HOH . G 5 HOH A 24 524 20 HOH HOH . G 5 HOH A 25 525 142 HOH HOH . G 5 HOH A 26 526 135 HOH HOH . G 5 HOH A 27 527 109 HOH HOH . G 5 HOH A 28 528 11 HOH HOH . G 5 HOH A 29 529 21 HOH HOH . G 5 HOH A 30 530 136 HOH HOH . G 5 HOH A 31 531 26 HOH HOH . G 5 HOH A 32 532 88 HOH HOH . G 5 HOH A 33 533 47 HOH HOH . G 5 HOH A 34 534 125 HOH HOH . G 5 HOH A 35 535 29 HOH HOH . G 5 HOH A 36 536 113 HOH HOH . G 5 HOH A 37 537 84 HOH HOH . G 5 HOH A 38 538 97 HOH HOH . G 5 HOH A 39 539 56 HOH HOH . G 5 HOH A 40 540 33 HOH HOH . G 5 HOH A 41 541 30 HOH HOH . G 5 HOH A 42 542 46 HOH HOH . G 5 HOH A 43 543 18 HOH HOH . G 5 HOH A 44 544 85 HOH HOH . G 5 HOH A 45 545 72 HOH HOH . G 5 HOH A 46 546 35 HOH HOH . G 5 HOH A 47 547 15 HOH HOH . G 5 HOH A 48 548 67 HOH HOH . G 5 HOH A 49 549 126 HOH HOH . G 5 HOH A 50 550 127 HOH HOH . G 5 HOH A 51 551 43 HOH HOH . G 5 HOH A 52 552 3 HOH HOH . G 5 HOH A 53 553 78 HOH HOH . G 5 HOH A 54 554 103 HOH HOH . G 5 HOH A 55 555 31 HOH HOH . G 5 HOH A 56 556 6 HOH HOH . G 5 HOH A 57 557 115 HOH HOH . G 5 HOH A 58 558 157 HOH HOH . G 5 HOH A 59 559 98 HOH HOH . G 5 HOH A 60 560 44 HOH HOH . G 5 HOH A 61 561 54 HOH HOH . G 5 HOH A 62 562 81 HOH HOH . G 5 HOH A 63 563 100 HOH HOH . G 5 HOH A 64 564 130 HOH HOH . G 5 HOH A 65 565 10 HOH HOH . G 5 HOH A 66 566 4 HOH HOH . G 5 HOH A 67 567 16 HOH HOH . G 5 HOH A 68 568 36 HOH HOH . G 5 HOH A 69 569 58 HOH HOH . G 5 HOH A 70 570 40 HOH HOH . G 5 HOH A 71 571 59 HOH HOH . G 5 HOH A 72 572 14 HOH HOH . G 5 HOH A 73 573 152 HOH HOH . G 5 HOH A 74 574 42 HOH HOH . G 5 HOH A 75 575 66 HOH HOH . G 5 HOH A 76 576 92 HOH HOH . G 5 HOH A 77 577 17 HOH HOH . G 5 HOH A 78 578 1 HOH HOH . G 5 HOH A 79 579 48 HOH HOH . G 5 HOH A 80 580 24 HOH HOH . G 5 HOH A 81 581 134 HOH HOH . G 5 HOH A 82 582 52 HOH HOH . G 5 HOH A 83 583 87 HOH HOH . G 5 HOH A 84 584 13 HOH HOH . G 5 HOH A 85 585 22 HOH HOH . G 5 HOH A 86 586 105 HOH HOH . G 5 HOH A 87 587 75 HOH HOH . G 5 HOH A 88 588 86 HOH HOH . G 5 HOH A 89 589 27 HOH HOH . G 5 HOH A 90 590 49 HOH HOH . G 5 HOH A 91 591 74 HOH HOH . G 5 HOH A 92 592 94 HOH HOH . G 5 HOH A 93 593 37 HOH HOH . G 5 HOH A 94 594 5 HOH HOH . G 5 HOH A 95 595 95 HOH HOH . G 5 HOH A 96 596 32 HOH HOH . G 5 HOH A 97 597 53 HOH HOH . G 5 HOH A 98 598 51 HOH HOH . G 5 HOH A 99 599 39 HOH HOH . G 5 HOH A 100 600 128 HOH HOH . G 5 HOH A 101 601 60 HOH HOH . G 5 HOH A 102 602 41 HOH HOH . G 5 HOH A 103 603 62 HOH HOH . G 5 HOH A 104 604 137 HOH HOH . G 5 HOH A 105 605 71 HOH HOH . G 5 HOH A 106 606 65 HOH HOH . G 5 HOH A 107 607 129 HOH HOH . G 5 HOH A 108 608 76 HOH HOH . G 5 HOH A 109 609 50 HOH HOH . G 5 HOH A 110 610 68 HOH HOH . G 5 HOH A 111 611 144 HOH HOH . G 5 HOH A 112 612 99 HOH HOH . G 5 HOH A 113 613 9 HOH HOH . G 5 HOH A 114 614 38 HOH HOH . G 5 HOH A 115 615 57 HOH HOH . G 5 HOH A 116 616 150 HOH HOH . G 5 HOH A 117 617 102 HOH HOH . G 5 HOH A 118 618 45 HOH HOH . G 5 HOH A 119 619 12 HOH HOH . G 5 HOH A 120 620 93 HOH HOH . G 5 HOH A 121 621 106 HOH HOH . G 5 HOH A 122 622 155 HOH HOH . G 5 HOH A 123 623 148 HOH HOH . G 5 HOH A 124 624 116 HOH HOH . G 5 HOH A 125 625 19 HOH HOH . G 5 HOH A 126 626 25 HOH HOH . G 5 HOH A 127 627 69 HOH HOH . G 5 HOH A 128 628 114 HOH HOH . G 5 HOH A 129 629 132 HOH HOH . G 5 HOH A 130 630 158 HOH HOH . G 5 HOH A 131 631 70 HOH HOH . G 5 HOH A 132 632 156 HOH HOH . G 5 HOH A 133 633 133 HOH HOH . G 5 HOH A 134 634 64 HOH HOH . G 5 HOH A 135 635 77 HOH HOH . G 5 HOH A 136 636 122 HOH HOH . G 5 HOH A 137 637 107 HOH HOH . G 5 HOH A 138 638 146 HOH HOH . G 5 HOH A 139 639 120 HOH HOH . G 5 HOH A 140 640 80 HOH HOH . G 5 HOH A 141 641 91 HOH HOH . G 5 HOH A 142 642 96 HOH HOH . G 5 HOH A 143 643 90 HOH HOH . G 5 HOH A 144 644 121 HOH HOH . G 5 HOH A 145 645 7 HOH HOH . G 5 HOH A 146 646 153 HOH HOH . G 5 HOH A 147 647 140 HOH HOH . G 5 HOH A 148 648 8 HOH HOH . G 5 HOH A 149 649 149 HOH HOH . G 5 HOH A 150 650 131 HOH HOH . G 5 HOH A 151 651 110 HOH HOH . G 5 HOH A 152 652 61 HOH HOH . G 5 HOH A 153 653 108 HOH HOH . G 5 HOH A 154 654 79 HOH HOH . G 5 HOH A 155 655 143 HOH HOH . G 5 HOH A 156 656 145 HOH HOH . G 5 HOH A 157 657 111 HOH HOH . G 5 HOH A 158 658 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SLB . B . C 3 21.507 14.803 20.626 0.5 18.72 ? C1 SLB 402 A 1 HETATM 2 C C2 SLB . B . C 3 20.76 13.535 20.312 0.5 14.69 ? C2 SLB 402 A 1 HETATM 3 C C3 SLB . B . C 3 20.196 13.592 18.892 0.5 14.39 ? C3 SLB 402 A 1 HETATM 4 C C4 SLB . B . C 3 19.33 12.365 18.609 0.5 12.71 ? C4 SLB 402 A 1 HETATM 5 C C5 SLB . B . C 3 18.241 12.278 19.675 0.5 10.94 ? C5 SLB 402 A 1 HETATM 6 C C6 SLB . B . C 3 18.894 12.255 21.054 0.5 11.88 ? C6 SLB 402 A 1 HETATM 7 C C7 SLB . B . C 3 17.877 12.261 22.165 0.5 14.8 ? C7 SLB 402 A 1 HETATM 8 C C8 SLB . B . C 3 18.644 12.36 23.481 0.5 20.42 ? C8 SLB 402 A 1 HETATM 9 C C9 SLB . B . C 3 17.695 12.188 24.633 0.5 24.3 ? C9 SLB 402 A 1 HETATM 10 C C10 SLB . B . C 3 16.207 11.162 18.94 0.5 12.81 ? C10 SLB 402 A 1 HETATM 11 C C11 SLB . B . C 3 15.508 9.85 18.778 0.5 13.24 ? C11 SLB 402 A 1 HETATM 12 N N5 SLB . B . C 3 17.405 11.099 19.511 0.5 10.81 ? N5 SLB 402 A 1 HETATM 13 O O1A SLB . B . C 3 22.749 14.822 20.553 0.5 22.38 ? O1A SLB 402 A 1 HETATM 14 O O1B SLB . B . C 3 20.833 15.778 20.954 0.5 20.41 ? O1B SLB 402 A 1 HETATM 15 O O2 SLB . B . C 3 21.655 12.433 20.478 0.5 17.75 ? O2 SLB 402 A 1 HETATM 16 O O4 SLB . B . C 3 18.742 12.447 17.315 0.5 14.32 ? O4 SLB 402 A 1 HETATM 17 O O6 SLB . B . C 3 19.695 13.417 21.231 0.5 11.63 ? O6 SLB 402 A 1 HETATM 18 O O7 SLB . B . C 3 16.974 13.356 21.999 0.5 17.71 ? O7 SLB 402 A 1 HETATM 19 O O8 SLB . B . C 3 19.647 11.349 23.533 0.5 21.96 ? O8 SLB 402 A 1 HETATM 20 O O9 SLB . B . C 3 18.498 12.22 25.81 0.5 22.36 ? O9 SLB 402 A 1 HETATM 21 O O10 SLB . B . C 3 15.72 12.195 18.564 0.5 13.17 ? O10 SLB 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #