data_6QUM # _model_server_result.job_id UJSK7rDssf347jCq_ZvpBw _model_server_result.datetime_utc '2024-12-28 10:38:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":602}' # _entry.id 6QUM # _exptl.entry_id 6QUM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QUM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 26-meric _pdbx_struct_assembly.oligomeric_count 26 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 BA N N ? 11 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 267 M CYS 267 1_555 M SG CYS 322 M CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OG1 THR 235 A THR 235 1_555 AA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 AA MG MG . A MG 601 1_555 BA O2B ADP . A ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6QUM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code AA 10 MG A 1 601 599 MG MG . BA 11 ADP A 1 602 600 ADP ADP . CA 11 ADP A 1 603 479 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . BA 11 82.883 95.484 179.19 1 160.52 ? PB ADP 602 A 1 HETATM 2 O O1B ADP . . . BA 11 81.858 96.509 178.788 1 364.88 -1 O1B ADP 602 A 1 HETATM 3 O O2B ADP . . . BA 11 83.473 95.697 180.556 1 123.56 ? O2B ADP 602 A 1 HETATM 4 O O3B ADP . . . BA 11 82.501 94.072 178.888 1 120.21 ? O3B ADP 602 A 1 HETATM 5 P PA ADP . . . BA 11 84.51 97.289 177.985 1 145.97 ? PA ADP 602 A 1 HETATM 6 O O1A ADP . . . BA 11 83.361 97.929 177.285 1 241.87 -1 O1A ADP 602 A 1 HETATM 7 O O2A ADP . . . BA 11 84.95 97.864 179.294 1 114.95 ? O2A ADP 602 A 1 HETATM 8 O O3A ADP . . . BA 11 84.097 95.762 178.188 1 158.61 ? O3A ADP 602 A 1 HETATM 9 O O5' ADP . . . BA 11 85.786 97.234 177.018 1 100.22 ? O5' ADP 602 A 1 HETATM 10 C C5' ADP . . . BA 11 85.613 97.074 175.624 1 94.91 ? C5' ADP 602 A 1 HETATM 11 C C4' ADP . . . BA 11 86.877 97.359 174.817 1 91.37 ? C4' ADP 602 A 1 HETATM 12 O O4' ADP . . . BA 11 86.491 97.439 173.441 1 92.73 ? O4' ADP 602 A 1 HETATM 13 C C3' ADP . . . BA 11 87.509 98.7 175.126 1 93.17 ? C3' ADP 602 A 1 HETATM 14 O O3' ADP . . . BA 11 88.696 98.558 175.887 1 89.07 ? O3' ADP 602 A 1 HETATM 15 C C2' ADP . . . BA 11 87.859 99.287 173.782 1 102.42 ? C2' ADP 602 A 1 HETATM 16 O O2' ADP . . . BA 11 89.169 98.841 173.412 1 111.49 ? O2' ADP 602 A 1 HETATM 17 C C1' ADP . . . BA 11 86.812 98.704 172.858 1 100.4 ? C1' ADP 602 A 1 HETATM 18 N N9 ADP . . . BA 11 85.611 99.6 172.884 1 111.66 ? N9 ADP 602 A 1 HETATM 19 C C8 ADP . . . BA 11 84.44 99.37 173.513 1 121.73 ? C8 ADP 602 A 1 HETATM 20 N N7 ADP . . . BA 11 83.532 100.342 173.398 1 117.23 ? N7 ADP 602 A 1 HETATM 21 C C5 ADP . . . BA 11 84.112 101.256 172.629 1 102.14 ? C5 ADP 602 A 1 HETATM 22 C C6 ADP . . . BA 11 83.675 102.557 172.114 1 82.2 ? C6 ADP 602 A 1 HETATM 23 N N6 ADP . . . BA 11 82.438 103.02 172.4 1 77.78 ? N6 ADP 602 A 1 HETATM 24 N N1 ADP . . . BA 11 84.539 103.235 171.341 1 84.71 ? N1 ADP 602 A 1 HETATM 25 C C2 ADP . . . BA 11 85.764 102.754 171.064 1 91.65 ? C2 ADP 602 A 1 HETATM 26 N N3 ADP . . . BA 11 86.234 101.575 171.51 1 101.71 ? N3 ADP 602 A 1 HETATM 27 C C4 ADP . . . BA 11 85.467 100.784 172.29 1 108.7 ? C4 ADP 602 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #