data_6QUP
#
_model_server_result.job_id            FrrJZk3EAMN-FiDZVwKhDA 
_model_server_result.datetime_utc      '2025-03-01 00:42:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    6QUP 
#
_exptl.entry_id    6QUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.92 
_cell.angle_gamma         90 
_cell.entry_id            6QUP 
_cell.length_a            59.822 
_cell.length_b            36.083 
_cell.length_c            72.661 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 47 1_555 A SG CYS 68 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf2 A SG CYS 22 A CYS 54 1_555 A SG CYS 125 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 A SG CYS 66 A CYS 98 1_555 A SG CYS 123 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
covale ? covale1 A ND2 ASN 152 A ASN 184 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6QUP 
_atom_sites.fract_transf_matrix[1][1]    0.016716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001145 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027714 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 301 1184 NAG NAG . 
D 4 IPA A 1 302 3 IPA IPA . 
E 5 EDO A 1 303 6 EDO EDO . 
F 5 EDO A 1 304 7 EDO EDO . 
G 4 IPA B 1 201 1 IPA IPA . 
H 4 IPA B 1 202 2 IPA IPA . 
I 5 EDO B 1 203 4 EDO EDO . 
J 5 EDO B 1 204 5 EDO EDO . 
K 6 HOH A 1 401 52 HOH HOH . 
K 6 HOH A 2 402 161 HOH HOH . 
K 6 HOH A 3 403 61 HOH HOH . 
K 6 HOH A 4 404 214 HOH HOH . 
K 6 HOH A 5 405 36 HOH HOH . 
K 6 HOH A 6 406 124 HOH HOH . 
K 6 HOH A 7 407 62 HOH HOH . 
K 6 HOH A 8 408 96 HOH HOH . 
K 6 HOH A 9 409 20 HOH HOH . 
K 6 HOH A 10 410 6 HOH HOH . 
K 6 HOH A 11 411 33 HOH HOH . 
K 6 HOH A 12 412 10 HOH HOH . 
K 6 HOH A 13 413 32 HOH HOH . 
K 6 HOH A 14 414 12 HOH HOH . 
K 6 HOH A 15 415 19 HOH HOH . 
K 6 HOH A 16 416 4 HOH HOH . 
K 6 HOH A 17 417 47 HOH HOH . 
K 6 HOH A 18 418 13 HOH HOH . 
K 6 HOH A 19 419 98 HOH HOH . 
K 6 HOH A 20 420 46 HOH HOH . 
K 6 HOH A 21 421 18 HOH HOH . 
K 6 HOH A 22 422 172 HOH HOH . 
K 6 HOH A 23 423 21 HOH HOH . 
K 6 HOH A 24 424 83 HOH HOH . 
K 6 HOH A 25 425 67 HOH HOH . 
K 6 HOH A 26 426 29 HOH HOH . 
K 6 HOH A 27 427 192 HOH HOH . 
K 6 HOH A 28 428 22 HOH HOH . 
K 6 HOH A 29 429 1 HOH HOH . 
K 6 HOH A 30 430 113 HOH HOH . 
K 6 HOH A 31 431 8 HOH HOH . 
K 6 HOH A 32 432 17 HOH HOH . 
K 6 HOH A 33 433 37 HOH HOH . 
K 6 HOH A 34 434 23 HOH HOH . 
K 6 HOH A 35 435 25 HOH HOH . 
K 6 HOH A 36 436 145 HOH HOH . 
K 6 HOH A 37 437 171 HOH HOH . 
K 6 HOH A 38 438 153 HOH HOH . 
K 6 HOH A 39 439 105 HOH HOH . 
K 6 HOH A 40 440 206 HOH HOH . 
K 6 HOH A 41 441 159 HOH HOH . 
K 6 HOH A 42 442 15 HOH HOH . 
K 6 HOH A 43 443 3 HOH HOH . 
K 6 HOH A 44 444 170 HOH HOH . 
K 6 HOH A 45 445 7 HOH HOH . 
K 6 HOH A 46 446 16 HOH HOH . 
K 6 HOH A 47 447 2 HOH HOH . 
K 6 HOH A 48 448 70 HOH HOH . 
K 6 HOH A 49 449 211 HOH HOH . 
K 6 HOH A 50 450 88 HOH HOH . 
K 6 HOH A 51 451 204 HOH HOH . 
K 6 HOH A 52 452 205 HOH HOH . 
K 6 HOH A 53 453 60 HOH HOH . 
K 6 HOH A 54 454 45 HOH HOH . 
K 6 HOH A 55 455 158 HOH HOH . 
K 6 HOH A 56 456 174 HOH HOH . 
K 6 HOH A 57 457 78 HOH HOH . 
K 6 HOH A 58 458 79 HOH HOH . 
K 6 HOH A 59 459 175 HOH HOH . 
K 6 HOH A 60 460 157 HOH HOH . 
K 6 HOH A 61 461 89 HOH HOH . 
K 6 HOH A 62 462 133 HOH HOH . 
K 6 HOH A 63 463 119 HOH HOH . 
K 6 HOH A 64 464 59 HOH HOH . 
K 6 HOH A 65 465 102 HOH HOH . 
K 6 HOH A 66 466 122 HOH HOH . 
K 6 HOH A 67 467 91 HOH HOH . 
K 6 HOH A 68 468 137 HOH HOH . 
K 6 HOH A 69 469 216 HOH HOH . 
K 6 HOH A 70 470 117 HOH HOH . 
K 6 HOH A 71 471 212 HOH HOH . 
K 6 HOH A 72 472 162 HOH HOH . 
K 6 HOH A 73 473 135 HOH HOH . 
K 6 HOH A 74 474 64 HOH HOH . 
K 6 HOH A 75 475 128 HOH HOH . 
K 6 HOH A 76 476 123 HOH HOH . 
K 6 HOH A 77 477 104 HOH HOH . 
K 6 HOH A 78 478 213 HOH HOH . 
K 6 HOH A 79 479 182 HOH HOH . 
K 6 HOH A 80 480 190 HOH HOH . 
K 6 HOH A 81 481 134 HOH HOH . 
K 6 HOH A 82 482 180 HOH HOH . 
K 6 HOH A 83 483 209 HOH HOH . 
K 6 HOH A 84 484 208 HOH HOH . 
K 6 HOH A 85 485 30 HOH HOH . 
K 6 HOH A 86 486 210 HOH HOH . 
K 6 HOH A 87 487 199 HOH HOH . 
K 6 HOH A 88 488 121 HOH HOH . 
K 6 HOH A 89 489 99 HOH HOH . 
K 6 HOH A 90 490 215 HOH HOH . 
K 6 HOH A 91 491 176 HOH HOH . 
K 6 HOH A 92 492 136 HOH HOH . 
L 6 HOH B 1 301 197 HOH HOH . 
L 6 HOH B 2 302 163 HOH HOH . 
L 6 HOH B 3 303 178 HOH HOH . 
L 6 HOH B 4 304 75 HOH HOH . 
L 6 HOH B 5 305 165 HOH HOH . 
L 6 HOH B 6 306 80 HOH HOH . 
L 6 HOH B 7 307 31 HOH HOH . 
L 6 HOH B 8 308 76 HOH HOH . 
L 6 HOH B 9 309 54 HOH HOH . 
L 6 HOH B 10 310 164 HOH HOH . 
L 6 HOH B 11 311 68 HOH HOH . 
L 6 HOH B 12 312 26 HOH HOH . 
L 6 HOH B 13 313 69 HOH HOH . 
L 6 HOH B 14 314 160 HOH HOH . 
L 6 HOH B 15 315 130 HOH HOH . 
L 6 HOH B 16 316 44 HOH HOH . 
L 6 HOH B 17 317 41 HOH HOH . 
L 6 HOH B 18 318 56 HOH HOH . 
L 6 HOH B 19 319 193 HOH HOH . 
L 6 HOH B 20 320 95 HOH HOH . 
L 6 HOH B 21 321 24 HOH HOH . 
L 6 HOH B 22 322 11 HOH HOH . 
L 6 HOH B 23 323 97 HOH HOH . 
L 6 HOH B 24 324 144 HOH HOH . 
L 6 HOH B 25 325 118 HOH HOH . 
L 6 HOH B 26 326 50 HOH HOH . 
L 6 HOH B 27 327 38 HOH HOH . 
L 6 HOH B 28 328 86 HOH HOH . 
L 6 HOH B 29 329 154 HOH HOH . 
L 6 HOH B 30 330 132 HOH HOH . 
L 6 HOH B 31 331 40 HOH HOH . 
L 6 HOH B 32 332 100 HOH HOH . 
L 6 HOH B 33 333 49 HOH HOH . 
L 6 HOH B 34 334 48 HOH HOH . 
L 6 HOH B 35 335 82 HOH HOH . 
L 6 HOH B 36 336 198 HOH HOH . 
L 6 HOH B 37 337 34 HOH HOH . 
L 6 HOH B 38 338 51 HOH HOH . 
L 6 HOH B 39 339 191 HOH HOH . 
L 6 HOH B 40 340 85 HOH HOH . 
L 6 HOH B 41 341 201 HOH HOH . 
L 6 HOH B 42 342 9 HOH HOH . 
L 6 HOH B 43 343 202 HOH HOH . 
L 6 HOH B 44 344 14 HOH HOH . 
L 6 HOH B 45 345 81 HOH HOH . 
L 6 HOH B 46 346 27 HOH HOH . 
L 6 HOH B 47 347 90 HOH HOH . 
L 6 HOH B 48 348 195 HOH HOH . 
L 6 HOH B 49 349 112 HOH HOH . 
L 6 HOH B 50 350 35 HOH HOH . 
L 6 HOH B 51 351 71 HOH HOH . 
L 6 HOH B 52 352 148 HOH HOH . 
L 6 HOH B 53 353 84 HOH HOH . 
L 6 HOH B 54 354 103 HOH HOH . 
L 6 HOH B 55 355 77 HOH HOH . 
L 6 HOH B 56 356 183 HOH HOH . 
L 6 HOH B 57 357 114 HOH HOH . 
L 6 HOH B 58 358 55 HOH HOH . 
L 6 HOH B 59 359 115 HOH HOH . 
L 6 HOH B 60 360 151 HOH HOH . 
L 6 HOH B 61 361 189 HOH HOH . 
L 6 HOH B 62 362 120 HOH HOH . 
L 6 HOH B 63 363 196 HOH HOH . 
L 6 HOH B 64 364 129 HOH HOH . 
L 6 HOH B 65 365 141 HOH HOH . 
L 6 HOH B 66 366 143 HOH HOH . 
L 6 HOH B 67 367 184 HOH HOH . 
L 6 HOH B 68 368 108 HOH HOH . 
L 6 HOH B 69 369 139 HOH HOH . 
L 6 HOH B 70 370 194 HOH HOH . 
L 6 HOH B 71 371 207 HOH HOH . 
L 6 HOH B 72 372 116 HOH HOH . 
L 6 HOH B 73 373 156 HOH HOH . 
L 6 HOH B 74 374 177 HOH HOH . 
L 6 HOH B 75 375 63 HOH HOH . 
L 6 HOH B 76 376 57 HOH HOH . 
L 6 HOH B 77 377 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 5 68.106 -1.845 35.01 1 105.9 ? C1 EDO 304 A 1 
HETATM 2 O O1 EDO . . . F 5 68.204 -2.659 36.179 1 107.96 ? O1 EDO 304 A 1 
HETATM 3 C C2 EDO . . . F 5 69.107 -0.7 35.094 1 102.18 ? C2 EDO 304 A 1 
HETATM 4 O O2 EDO . . . F 5 70.411 -1.175 34.784 1 99.99 ? O2 EDO 304 A 1 
HETATM 5 H H11 EDO . . . F 5 68.308 -2.448 34.122 1 127.1 ? H11 EDO 304 A 1 
HETATM 6 H H12 EDO . . . F 5 67.094 -1.445 34.922 1 127.1 ? H12 EDO 304 A 1 
HETATM 7 H HO1 EDO . . . F 5 67.322 -2.796 36.551 1 129.57 ? HO1 EDO 304 A 1 
HETATM 8 H H21 EDO . . . F 5 68.825 0.089 34.393 1 122.64 ? H21 EDO 304 A 1 
HETATM 9 H H22 EDO . . . F 5 69.099 -0.274 36.099 1 122.64 ? H22 EDO 304 A 1 
HETATM 10 H HO2 EDO . . . F 5 70.792 -0.635 34.078 1 120.01 ? HO2 EDO 304 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           640 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#