data_6QV0 # _model_server_result.job_id YZhCov0kO9Xcx0fWX_KbTw _model_server_result.datetime_utc '2024-11-22 23:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 6QV0 # _exptl.entry_id 6QV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.55 _cell.angle_gamma 90 _cell.entry_id 6QV0 _cell.length_a 166.28 _cell.length_b 77.29 _cell.length_c 207.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,J 1 1 C,D,F,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 K N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 25 E CYS 22 1_555 E SG CYS 99 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 25 F CYS 22 1_555 F SG CYS 99 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OG SER 383 A SER 373 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc2 A OE1 GLN 424 A GLN 414 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc3 G O2G ATP . A ATP 600 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 G O2B ATP . A ATP 600 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 B OG1 THR 395 B THR 395 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc6 B OE1 GLN 436 B GLN 436 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc7 I O1G ATP . B ATP 600 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 I O1B ATP . B ATP 600 1_555 J MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc9 C OG SER 383 C SER 373 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc10 C OE1 GLN 424 C GLN 414 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc11 K O2G ATP . C ATP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc12 K O2B ATP . C ATP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc13 D OG1 THR 395 D THR 395 1_555 N MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc14 D OE1 GLN 436 D GLN 436 1_555 N MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc15 M O1G ATP . D ATP 600 1_555 N MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc16 M O2B ATP . D ATP 600 1_555 N MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6QV0 _atom_sites.fract_transf_matrix[1][1] 0.006014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002497 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 600 600 ATP ATP . H 5 MG A 1 601 601 MG MG . I 4 ATP B 1 600 600 ATP ATP . J 5 MG B 1 601 601 MG MG . K 4 ATP C 1 600 600 ATP ATP . L 5 MG C 1 601 601 MG MG . M 4 ATP D 1 600 600 ATP ATP . N 5 MG D 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 4 47.762 -11.157 83.844 1 36.94 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . G 4 48.676 -11.081 85.059 1 36.97 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . G 4 48.173 -10.213 82.71 1 36.95 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . G 4 47.663 -12.558 83.26 1 36.54 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . G 4 45.629 -9.284 84.428 1 35.75 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . G 4 45.186 -9.122 85.833 1 36.07 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . G 4 46.685 -8.231 84.088 1 35.96 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . G 4 46.275 -10.725 84.218 1 36.27 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . G 4 43.948 -7.954 82.429 1 32.71 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . G 4 44.756 -8.016 81.189 1 32.03 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . G 4 44.209 -6.615 83.112 1 32.35 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . G 4 44.398 -9.105 83.435 1 34.53 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . G 4 42.359 -8.088 82.169 1 32.8 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . G 4 41.42 -8.787 83.016 1 33.63 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . G 4 40.319 -9.383 82.169 1 35.02 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . G 4 40.03 -8.525 81.042 1 35.78 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . G 4 40.567 -10.781 81.603 1 35.77 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . G 4 39.419 -11.613 81.733 1 35.72 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . G 4 40.967 -10.506 80.148 1 36.53 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . G 4 40.585 -11.554 79.264 1 37.17 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . G 4 40.18 -9.233 79.827 1 36.6 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . G 4 40.829 -8.355 78.854 1 37.8 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . G 4 42.085 -7.809 78.937 1 38.53 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . G 4 42.403 -7.042 77.923 1 38.75 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . G 4 41.277 -7.082 77.113 1 38.58 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . G 4 40.968 -6.463 75.885 1 38.65 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . G 4 41.817 -5.68 75.215 1 38.38 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . G 4 39.745 -6.7 75.351 1 39.01 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . G 4 38.901 -7.507 76.005 1 38.78 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . G 4 39.083 -8.146 77.166 1 38.56 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . G 4 40.299 -7.89 77.674 1 38.28 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 293 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #