data_6QV9 # _model_server_result.job_id e3bVaH9RJq35OMKNRt_seQ _model_server_result.datetime_utc '2025-03-04 23:02:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6QV9 # _exptl.entry_id 6QV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.58 _cell.angle_gamma 90 _cell.entry_id 6QV9 _cell.length_a 52.25 _cell.length_b 68.15 _cell.length_c 57.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 27 A HIS 27 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A NE2 HIS 81 A HIS 81 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 A OD2 ASP 161 A ASP 161 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 A NE2 HIS 165 A HIS 165 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 C MN MN . A MN 201 1_555 E O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 B NE2 HIS 27 B HIS 27 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 B NE2 HIS 81 B HIS 81 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 B OD2 ASP 161 B ASP 161 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc9 B NE2 HIS 165 B HIS 165 1_555 D MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc10 D MN MN . B MN 201 1_555 F O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QV9 _atom_sites.fract_transf_matrix[1][1] 0.019139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003575 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 1 MN MN . D 2 MN B 1 201 2 MN MN . E 3 HOH A 1 301 132 HOH HOH . E 3 HOH A 2 302 126 HOH HOH . E 3 HOH A 3 303 116 HOH HOH . E 3 HOH A 4 304 43 HOH HOH . E 3 HOH A 5 305 104 HOH HOH . E 3 HOH A 6 306 109 HOH HOH . E 3 HOH A 7 307 98 HOH HOH . E 3 HOH A 8 308 31 HOH HOH . E 3 HOH A 9 309 133 HOH HOH . E 3 HOH A 10 310 27 HOH HOH . E 3 HOH A 11 311 41 HOH HOH . E 3 HOH A 12 312 71 HOH HOH . E 3 HOH A 13 313 59 HOH HOH . E 3 HOH A 14 314 22 HOH HOH . E 3 HOH A 15 315 15 HOH HOH . E 3 HOH A 16 316 52 HOH HOH . E 3 HOH A 17 317 90 HOH HOH . E 3 HOH A 18 318 5 HOH HOH . E 3 HOH A 19 319 131 HOH HOH . E 3 HOH A 20 320 51 HOH HOH . E 3 HOH A 21 321 75 HOH HOH . E 3 HOH A 22 322 77 HOH HOH . E 3 HOH A 23 323 84 HOH HOH . E 3 HOH A 24 324 89 HOH HOH . E 3 HOH A 25 325 63 HOH HOH . E 3 HOH A 26 326 13 HOH HOH . E 3 HOH A 27 327 42 HOH HOH . E 3 HOH A 28 328 50 HOH HOH . E 3 HOH A 29 329 26 HOH HOH . E 3 HOH A 30 330 82 HOH HOH . E 3 HOH A 31 331 86 HOH HOH . E 3 HOH A 32 332 25 HOH HOH . E 3 HOH A 33 333 58 HOH HOH . E 3 HOH A 34 334 69 HOH HOH . E 3 HOH A 35 335 9 HOH HOH . E 3 HOH A 36 336 92 HOH HOH . E 3 HOH A 37 337 23 HOH HOH . E 3 HOH A 38 338 102 HOH HOH . E 3 HOH A 39 339 112 HOH HOH . E 3 HOH A 40 340 17 HOH HOH . E 3 HOH A 41 341 123 HOH HOH . E 3 HOH A 42 342 62 HOH HOH . E 3 HOH A 43 343 10 HOH HOH . E 3 HOH A 44 344 47 HOH HOH . E 3 HOH A 45 345 81 HOH HOH . E 3 HOH A 46 346 12 HOH HOH . E 3 HOH A 47 347 44 HOH HOH . E 3 HOH A 48 348 45 HOH HOH . E 3 HOH A 49 349 18 HOH HOH . E 3 HOH A 50 350 61 HOH HOH . E 3 HOH A 51 351 111 HOH HOH . E 3 HOH A 52 352 105 HOH HOH . E 3 HOH A 53 353 72 HOH HOH . E 3 HOH A 54 354 107 HOH HOH . E 3 HOH A 55 355 68 HOH HOH . E 3 HOH A 56 356 87 HOH HOH . E 3 HOH A 57 357 125 HOH HOH . E 3 HOH A 58 358 29 HOH HOH . E 3 HOH A 59 359 48 HOH HOH . E 3 HOH A 60 360 124 HOH HOH . E 3 HOH A 61 361 100 HOH HOH . E 3 HOH A 62 362 118 HOH HOH . E 3 HOH A 63 363 134 HOH HOH . E 3 HOH A 64 364 96 HOH HOH . E 3 HOH A 65 365 78 HOH HOH . F 3 HOH B 1 301 113 HOH HOH . F 3 HOH B 2 302 28 HOH HOH . F 3 HOH B 3 303 117 HOH HOH . F 3 HOH B 4 304 97 HOH HOH . F 3 HOH B 5 305 36 HOH HOH . F 3 HOH B 6 306 54 HOH HOH . F 3 HOH B 7 307 108 HOH HOH . F 3 HOH B 8 308 33 HOH HOH . F 3 HOH B 9 309 55 HOH HOH . F 3 HOH B 10 310 95 HOH HOH . F 3 HOH B 11 311 4 HOH HOH . F 3 HOH B 12 312 37 HOH HOH . F 3 HOH B 13 313 119 HOH HOH . F 3 HOH B 14 314 120 HOH HOH . F 3 HOH B 15 315 11 HOH HOH . F 3 HOH B 16 316 70 HOH HOH . F 3 HOH B 17 317 60 HOH HOH . F 3 HOH B 18 318 65 HOH HOH . F 3 HOH B 19 319 53 HOH HOH . F 3 HOH B 20 320 8 HOH HOH . F 3 HOH B 21 321 30 HOH HOH . F 3 HOH B 22 322 73 HOH HOH . F 3 HOH B 23 323 20 HOH HOH . F 3 HOH B 24 324 7 HOH HOH . F 3 HOH B 25 325 57 HOH HOH . F 3 HOH B 26 326 88 HOH HOH . F 3 HOH B 27 327 3 HOH HOH . F 3 HOH B 28 328 85 HOH HOH . F 3 HOH B 29 329 38 HOH HOH . F 3 HOH B 30 330 93 HOH HOH . F 3 HOH B 31 331 130 HOH HOH . F 3 HOH B 32 332 128 HOH HOH . F 3 HOH B 33 333 136 HOH HOH . F 3 HOH B 34 334 16 HOH HOH . F 3 HOH B 35 335 74 HOH HOH . F 3 HOH B 36 336 56 HOH HOH . F 3 HOH B 37 337 80 HOH HOH . F 3 HOH B 38 338 32 HOH HOH . F 3 HOH B 39 339 66 HOH HOH . F 3 HOH B 40 340 14 HOH HOH . F 3 HOH B 41 341 99 HOH HOH . F 3 HOH B 42 342 21 HOH HOH . F 3 HOH B 43 343 91 HOH HOH . F 3 HOH B 44 344 1 HOH HOH . F 3 HOH B 45 345 135 HOH HOH . F 3 HOH B 46 346 24 HOH HOH . F 3 HOH B 47 347 40 HOH HOH . F 3 HOH B 48 348 34 HOH HOH . F 3 HOH B 49 349 79 HOH HOH . F 3 HOH B 50 350 94 HOH HOH . F 3 HOH B 51 351 67 HOH HOH . F 3 HOH B 52 352 46 HOH HOH . F 3 HOH B 53 353 39 HOH HOH . F 3 HOH B 54 354 114 HOH HOH . F 3 HOH B 55 355 49 HOH HOH . F 3 HOH B 56 356 64 HOH HOH . F 3 HOH B 57 357 6 HOH HOH . F 3 HOH B 58 358 110 HOH HOH . F 3 HOH B 59 359 122 HOH HOH . F 3 HOH B 60 360 76 HOH HOH . F 3 HOH B 61 361 101 HOH HOH . F 3 HOH B 62 362 106 HOH HOH . F 3 HOH B 63 363 129 HOH HOH . F 3 HOH B 64 364 127 HOH HOH . F 3 HOH B 65 365 103 HOH HOH . F 3 HOH B 66 366 35 HOH HOH . F 3 HOH B 67 367 115 HOH HOH . F 3 HOH B 68 368 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.264 _atom_site.Cartn_y 5.634 _atom_site.Cartn_z 34.39 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #