data_6QVJ
#
_model_server_result.job_id            6CDLGlC0s0c6RB47exZLZw 
_model_server_result.datetime_utc      '2024-11-26 12:03:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6QVJ 
#
_exptl.entry_id    6QVJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QVJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 71 O GLU 71 1_555 G MG MG . O MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
metalc ? metalc2 F O1G GTP . O GTP 501 1_555 G MG MG . O MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc3 F O2G GTP . O GTP 501 1_555 G MG MG . O MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc4 F O3B GTP . O GTP 501 1_555 G MG MG . O MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc5 F O1B GTP . O GTP 501 1_555 G MG MG . O MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc6 C OE2 GLU 71 X GLU 71 1_555 I MG MG . X MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc7 H O1G GTP . X GTP 501 1_555 I MG MG . X MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc8 H O3B GTP . X GTP 501 1_555 I MG MG . X MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
metalc ? metalc9 H O1B GTP . X GTP 501 1_555 I MG MG . X MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     6QVJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP O 1 501 501 GTP GTP . 
G 5 MG O 1 502 502 MG MG . 
H 4 GTP X 1 501 501 GTP GTP . 
I 5 MG X 1 502 502 MG MG . 
J 6 GDP S 1 501 501 GDP GDP . 
K 7 TA1 S 1 502 601 TA1 TA1 . 
L 6 GDP U 1 501 501 GDP GDP . 
M 7 TA1 U 1 502 601 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . F 4 180.066 277.782 313.606 1 96.58 ? PG GTP 501 O 1 
HETATM 2 O O1G GTP . . . F 4 181.457 277.555 314.064 1 96.58 ? O1G GTP 501 O 1 
HETATM 3 O O2G GTP . . . F 4 179.556 279.176 313.879 1 96.58 ? O2G GTP 501 O 1 
HETATM 4 O O3G GTP . . . F 4 179.078 276.758 314.142 1 96.58 ? O3G GTP 501 O 1 
HETATM 5 O O3B GTP . . . F 4 180.017 277.647 312.027 1 96.58 ? O3B GTP 501 O 1 
HETATM 6 P PB GTP . . . F 4 181.201 277.193 311.075 1 96.58 ? PB GTP 501 O 1 
HETATM 7 O O1B GTP . . . F 4 182.39 278.002 311.331 1 96.58 ? O1B GTP 501 O 1 
HETATM 8 O O2B GTP . . . F 4 180.74 277.318 309.649 1 96.58 ? O2B GTP 501 O 1 
HETATM 9 O O3A GTP . . . F 4 181.511 275.659 311.348 1 96.58 ? O3A GTP 501 O 1 
HETATM 10 P PA GTP . . . F 4 181.996 274.592 310.274 1 96.58 ? PA GTP 501 O 1 
HETATM 11 O O1A GTP . . . F 4 183.459 274.46 310.366 1 96.58 ? O1A GTP 501 O 1 
HETATM 12 O O2A GTP . . . F 4 181.639 275.151 308.924 1 96.58 ? O2A GTP 501 O 1 
HETATM 13 O O5' GTP . . . F 4 181.188 273.245 310.425 1 96.58 ? O5' GTP 501 O 1 
HETATM 14 C C5' GTP . . . F 4 181.772 272.001 310.853 1 96.58 ? C5' GTP 501 O 1 
HETATM 15 C C4' GTP . . . F 4 182.21 271.217 309.645 1 96.58 ? C4' GTP 501 O 1 
HETATM 16 O O4' GTP . . . F 4 183.347 271.862 309.027 1 96.58 ? O4' GTP 501 O 1 
HETATM 17 C C3' GTP . . . F 4 182.622 269.77 309.925 1 96.58 ? C3' GTP 501 O 1 
HETATM 18 O O3' GTP . . . F 4 181.974 268.884 309.021 1 96.58 ? O3' GTP 501 O 1 
HETATM 19 C C2' GTP . . . F 4 184.136 269.785 309.713 1 96.58 ? C2' GTP 501 O 1 
HETATM 20 O O2' GTP . . . F 4 184.603 268.563 309.162 1 96.58 ? O2' GTP 501 O 1 
HETATM 21 C C1' GTP . . . F 4 184.28 270.873 308.664 1 96.58 ? C1' GTP 501 O 1 
HETATM 22 N N9 GTP . . . F 4 185.614 271.472 308.632 1 96.58 ? N9 GTP 501 O 1 
HETATM 23 C C8 GTP . . . F 4 186.18 272.289 309.567 1 96.58 ? C8 GTP 501 O 1 
HETATM 24 N N7 GTP . . . F 4 187.4 272.653 309.263 1 96.58 ? N7 GTP 501 O 1 
HETATM 25 C C5 GTP . . . F 4 187.648 272.038 308.051 1 96.58 ? C5 GTP 501 O 1 
HETATM 26 C C6 GTP . . . F 4 188.799 272.045 307.228 1 96.58 ? C6 GTP 501 O 1 
HETATM 27 O O6 GTP . . . F 4 189.856 272.621 307.442 1 96.58 ? O6 GTP 501 O 1 
HETATM 28 N N1 GTP . . . F 4 188.64 271.274 306.1 1 96.58 ? N1 GTP 501 O 1 
HETATM 29 C C2 GTP . . . F 4 187.515 270.57 305.789 1 96.58 ? C2 GTP 501 O 1 
HETATM 30 N N2 GTP . . . F 4 187.548 269.837 304.678 1 96.58 ? N2 GTP 501 O 1 
HETATM 31 N N3 GTP . . . F 4 186.424 270.564 306.549 1 96.58 ? N3 GTP 501 O 1 
HETATM 32 C C4 GTP . . . F 4 186.559 271.309 307.653 1 96.58 ? C4 GTP 501 O 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#