data_6QVO # _model_server_result.job_id 5JFKOxtvo2Rj0jCrMho2lA _model_server_result.datetime_utc '2025-01-10 19:56:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":204}' # _entry.id 6QVO # _exptl.entry_id 6QVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.248 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.74 _cell.angle_gamma 90 _cell.entry_id 6QVO _cell.length_a 35.478 _cell.length_b 67.111 _cell.length_c 117.678 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,P 1 1 B,I,J,K,Q 2 1 C,L,M,N,R 3 1 D,O,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 N N N ? 3 O N N # _chem_comp.formula 'C11 H16 N5 O6 P' _chem_comp.formula_weight 345.248 _chem_comp.id 6MA _chem_comp.mon_nstd_flag n _chem_comp.name "N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP3 P 6MA sing 1 n n OP3 HOP3 6MA sing 2 n n P OP1 6MA doub 3 n n P OP2 6MA sing 4 n n P O5' 6MA sing 5 n n OP2 HOP2 6MA sing 6 n n O5' C5' 6MA sing 7 n n C5' C4' 6MA sing 8 n n C5' H5' 6MA sing 9 n n C5' "H5''" 6MA sing 10 n n C4' O4' 6MA sing 11 n n C4' C3' 6MA sing 12 n n C4' H4' 6MA sing 13 n n O4' C1' 6MA sing 14 n n C3' O3' 6MA sing 15 n n C3' C2' 6MA sing 16 n n C3' H3' 6MA sing 17 n n O3' HO3' 6MA sing 18 n n C2' C1' 6MA sing 19 n n C2' H2' 6MA sing 20 n n C2' "H2''" 6MA sing 21 n n C1' N9 6MA sing 22 n n C1' H1' 6MA sing 23 n n N9 C8 6MA sing 24 n y N9 C4 6MA sing 25 n y C8 N7 6MA doub 26 n y C8 H8 6MA sing 27 n n N7 C5 6MA sing 28 n y C5 C6 6MA sing 29 n y C5 C4 6MA doub 30 n y C6 N1 6MA doub 31 n y C6 N6 6MA sing 32 n n N1 C2 6MA sing 33 n y C2 N3 6MA doub 34 n y C2 H2 6MA sing 35 n n N3 C4 6MA sing 36 n y N6 C1 6MA sing 37 n n N6 H61 6MA sing 38 n n C1 H11 6MA sing 39 n n C1 H12 6MA sing 40 n n C1 H13 6MA sing 41 n n # _atom_sites.entry_id 6QVO _atom_sites.fract_transf_matrix[1][1] 0.028186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002335 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 201 1 SO4 SO4 . F 2 SO4 A 1 202 3 SO4 SO4 . G 2 SO4 A 1 203 6 SO4 SO4 . H 3 6MA A 1 204 1 6MA 6MA . I 2 SO4 B 1 201 2 SO4 SO4 . J 3 6MA B 1 202 2 6MA 6MA . K 4 GOL B 1 203 1 GOL GOL . L 2 SO4 C 1 201 4 SO4 SO4 . M 2 SO4 C 1 202 5 SO4 SO4 . N 3 6MA C 1 203 3 6MA 6MA . O 3 6MA D 1 201 4 6MA 6MA . P 5 HOH A 1 301 57 HOH HOH . P 5 HOH A 2 302 20 HOH HOH . P 5 HOH A 3 303 35 HOH HOH . P 5 HOH A 4 304 51 HOH HOH . P 5 HOH A 5 305 15 HOH HOH . P 5 HOH A 6 306 59 HOH HOH . P 5 HOH A 7 307 19 HOH HOH . P 5 HOH A 8 308 5 HOH HOH . P 5 HOH A 9 309 3 HOH HOH . P 5 HOH A 10 310 18 HOH HOH . P 5 HOH A 11 311 49 HOH HOH . P 5 HOH A 12 312 23 HOH HOH . P 5 HOH A 13 313 22 HOH HOH . P 5 HOH A 14 314 58 HOH HOH . P 5 HOH A 15 315 12 HOH HOH . P 5 HOH A 16 316 60 HOH HOH . P 5 HOH A 17 317 63 HOH HOH . P 5 HOH A 18 318 13 HOH HOH . P 5 HOH A 19 319 26 HOH HOH . P 5 HOH A 20 320 24 HOH HOH . P 5 HOH A 21 321 44 HOH HOH . P 5 HOH A 22 322 62 HOH HOH . P 5 HOH A 23 323 61 HOH HOH . Q 5 HOH B 1 301 56 HOH HOH . Q 5 HOH B 2 302 50 HOH HOH . Q 5 HOH B 3 303 32 HOH HOH . Q 5 HOH B 4 304 10 HOH HOH . Q 5 HOH B 5 305 66 HOH HOH . Q 5 HOH B 6 306 68 HOH HOH . Q 5 HOH B 7 307 4 HOH HOH . Q 5 HOH B 8 308 65 HOH HOH . Q 5 HOH B 9 309 11 HOH HOH . Q 5 HOH B 10 310 16 HOH HOH . Q 5 HOH B 11 311 80 HOH HOH . Q 5 HOH B 12 312 69 HOH HOH . Q 5 HOH B 13 313 67 HOH HOH . Q 5 HOH B 14 314 9 HOH HOH . Q 5 HOH B 15 315 31 HOH HOH . Q 5 HOH B 16 316 79 HOH HOH . Q 5 HOH B 17 317 27 HOH HOH . Q 5 HOH B 18 318 30 HOH HOH . Q 5 HOH B 19 319 28 HOH HOH . Q 5 HOH B 20 320 64 HOH HOH . Q 5 HOH B 21 321 73 HOH HOH . R 5 HOH C 1 301 40 HOH HOH . R 5 HOH C 2 302 70 HOH HOH . R 5 HOH C 3 303 6 HOH HOH . R 5 HOH C 4 304 48 HOH HOH . R 5 HOH C 5 305 7 HOH HOH . R 5 HOH C 6 306 2 HOH HOH . R 5 HOH C 7 307 33 HOH HOH . R 5 HOH C 8 308 74 HOH HOH . R 5 HOH C 9 309 87 HOH HOH . R 5 HOH C 10 310 8 HOH HOH . R 5 HOH C 11 311 39 HOH HOH . R 5 HOH C 12 312 41 HOH HOH . R 5 HOH C 13 313 86 HOH HOH . R 5 HOH C 14 314 25 HOH HOH . R 5 HOH C 15 315 47 HOH HOH . R 5 HOH C 16 316 1 HOH HOH . R 5 HOH C 17 317 46 HOH HOH . R 5 HOH C 18 318 76 HOH HOH . R 5 HOH C 19 319 52 HOH HOH . R 5 HOH C 20 320 71 HOH HOH . R 5 HOH C 21 321 77 HOH HOH . R 5 HOH C 22 322 36 HOH HOH . R 5 HOH C 23 323 53 HOH HOH . R 5 HOH C 24 324 54 HOH HOH . R 5 HOH C 25 325 42 HOH HOH . R 5 HOH C 26 326 38 HOH HOH . R 5 HOH C 27 327 37 HOH HOH . R 5 HOH C 28 328 75 HOH HOH . R 5 HOH C 29 329 85 HOH HOH . R 5 HOH C 30 330 72 HOH HOH . R 5 HOH C 31 331 29 HOH HOH . R 5 HOH C 32 332 34 HOH HOH . R 5 HOH C 33 333 55 HOH HOH . S 5 HOH D 1 301 17 HOH HOH . S 5 HOH D 2 302 14 HOH HOH . S 5 HOH D 3 303 43 HOH HOH . S 5 HOH D 4 304 83 HOH HOH . S 5 HOH D 5 305 81 HOH HOH . S 5 HOH D 6 306 78 HOH HOH . S 5 HOH D 7 307 82 HOH HOH . S 5 HOH D 8 308 45 HOH HOH . S 5 HOH D 9 309 21 HOH HOH . S 5 HOH D 10 310 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP3 6MA . . . H 3 -2.562 12.391 23.93 1 54.34 ? OP3 6MA 204 A 1 HETATM 2 P P 6MA . . . H 3 -2.523 11.03 23.26 1 56.42 ? P 6MA 204 A 1 HETATM 3 O OP1 6MA . . . H 3 -3.77 10.181 23.478 1 51.42 ? OP1 6MA 204 A 1 HETATM 4 O OP2 6MA . . . H 3 -1.985 11.095 21.838 1 50.53 ? OP2 6MA 204 A 1 HETATM 5 O O5' 6MA . . . H 3 -1.407 10.207 24.098 1 53.73 ? O5' 6MA 204 A 1 HETATM 6 C C5' 6MA . . . H 3 -1.504 10.039 25.514 1 52.33 ? C5' 6MA 204 A 1 HETATM 7 C C4' 6MA . . . H 3 -0.268 10.662 26.158 1 52.59 ? C4' 6MA 204 A 1 HETATM 8 O O4' 6MA . . . H 3 -0.508 10.84 27.554 1 52.37 ? O4' 6MA 204 A 1 HETATM 9 C C3' 6MA . . . H 3 0.974 9.79 26.083 1 49.97 ? C3' 6MA 204 A 1 HETATM 10 O O3' 6MA . . . H 3 2.126 10.626 26.205 1 47.5 ? O3' 6MA 204 A 1 HETATM 11 C C2' 6MA . . . H 3 0.869 8.921 27.312 1 49.88 ? C2' 6MA 204 A 1 HETATM 12 C C1' 6MA . . . H 3 0.283 9.913 28.304 1 50.4 ? C1' 6MA 204 A 1 HETATM 13 N N9 6MA . . . H 3 -0.571 9.299 29.343 1 49.9 ? N9 6MA 204 A 1 HETATM 14 C C8 6MA . . . H 3 -1.688 8.579 29.131 1 50.24 ? C8 6MA 204 A 1 HETATM 15 N N7 6MA . . . H 3 -2.229 8.185 30.313 1 48.39 ? N7 6MA 204 A 1 HETATM 16 C C5 6MA . . . H 3 -1.447 8.674 31.303 1 47.62 ? C5 6MA 204 A 1 HETATM 17 C C6 6MA . . . H 3 -1.429 8.642 32.79 1 46.64 ? C6 6MA 204 A 1 HETATM 18 N N1 6MA . . . H 3 -0.414 9.294 33.426 1 45.61 ? N1 6MA 204 A 1 HETATM 19 C C2 6MA . . . H 3 0.563 9.953 32.763 1 47.27 ? C2 6MA 204 A 1 HETATM 20 N N3 6MA . . . H 3 0.603 10.019 31.416 1 47.14 ? N3 6MA 204 A 1 HETATM 21 C C4 6MA . . . H 3 -0.353 9.416 30.654 1 48.17 ? C4 6MA 204 A 1 HETATM 22 N N6 6MA . . . H 3 -2.373 7.987 33.506 1 45.82 ? N6 6MA 204 A 1 HETATM 23 C C1 6MA . . . H 3 -3.437 7.227 32.88 1 44.53 ? C1 6MA 204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #