data_6QWY # _model_server_result.job_id DQmza5qTX22O_jOYchkPcA _model_server_result.datetime_utc '2024-12-01 15:40:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6QWY # _exptl.entry_id 6QWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QWY _cell.length_a 77.147 _cell.length_b 77.147 _cell.length_c 37.139 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc1 A OG1 THR 40 A THR 40 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc2 A OD2 ASP 52 A ASP 52 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc3 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc5 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc6 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 A O LEU 84 A LEU 84 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc8 B NA NA . A NA 201 1_555 I O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 B NA NA . A NA 201 1_555 I O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc10 C NA NA . A NA 202 1_555 I O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 D NA NA . A NA 203 1_555 I O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 D NA NA . A NA 203 1_555 I O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc13 D NA NA . A NA 203 1_555 I O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc14 D NA NA . A NA 203 1_555 I O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc15 D NA NA . A NA 203 1_555 I O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QWY _atom_sites.fract_transf_matrix[1][1] 0.012962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 2 NA A 1 202 2 NA NA . D 2 NA A 1 203 3 NA NA . E 3 CL A 1 204 1 CL CL . F 3 CL A 1 205 2 CL CL . G 3 CL A 1 206 3 CL CL . H 3 CL A 1 207 4 CL CL . I 4 HOH A 1 301 61 HOH HOH . I 4 HOH A 2 302 29 HOH HOH . I 4 HOH A 3 303 149 HOH HOH . I 4 HOH A 4 304 34 HOH HOH . I 4 HOH A 5 305 86 HOH HOH . I 4 HOH A 6 306 127 HOH HOH . I 4 HOH A 7 307 105 HOH HOH . I 4 HOH A 8 308 83 HOH HOH . I 4 HOH A 9 309 90 HOH HOH . I 4 HOH A 10 310 100 HOH HOH . I 4 HOH A 11 311 142 HOH HOH . I 4 HOH A 12 312 8 HOH HOH . I 4 HOH A 13 313 31 HOH HOH . I 4 HOH A 14 314 9 HOH HOH . I 4 HOH A 15 315 120 HOH HOH . I 4 HOH A 16 316 52 HOH HOH . I 4 HOH A 17 317 81 HOH HOH . I 4 HOH A 18 318 16 HOH HOH . I 4 HOH A 19 319 78 HOH HOH . I 4 HOH A 20 320 73 HOH HOH . I 4 HOH A 21 321 15 HOH HOH . I 4 HOH A 22 322 108 HOH HOH . I 4 HOH A 23 323 79 HOH HOH . I 4 HOH A 24 324 84 HOH HOH . I 4 HOH A 25 325 38 HOH HOH . I 4 HOH A 26 326 135 HOH HOH . I 4 HOH A 27 327 43 HOH HOH . I 4 HOH A 28 328 74 HOH HOH . I 4 HOH A 29 329 54 HOH HOH . I 4 HOH A 30 330 58 HOH HOH . I 4 HOH A 31 331 95 HOH HOH . I 4 HOH A 32 332 62 HOH HOH . I 4 HOH A 33 333 134 HOH HOH . I 4 HOH A 34 334 124 HOH HOH . I 4 HOH A 35 335 13 HOH HOH . I 4 HOH A 36 336 20 HOH HOH . I 4 HOH A 37 337 104 HOH HOH . I 4 HOH A 38 338 63 HOH HOH . I 4 HOH A 39 339 27 HOH HOH . I 4 HOH A 40 340 12 HOH HOH . I 4 HOH A 41 341 14 HOH HOH . I 4 HOH A 42 342 111 HOH HOH . I 4 HOH A 43 343 128 HOH HOH . I 4 HOH A 44 344 46 HOH HOH . I 4 HOH A 45 345 148 HOH HOH . I 4 HOH A 46 346 47 HOH HOH . I 4 HOH A 47 347 22 HOH HOH . I 4 HOH A 48 348 19 HOH HOH . I 4 HOH A 49 349 24 HOH HOH . I 4 HOH A 50 350 50 HOH HOH . I 4 HOH A 51 351 76 HOH HOH . I 4 HOH A 52 352 35 HOH HOH . I 4 HOH A 53 353 7 HOH HOH . I 4 HOH A 54 354 98 HOH HOH . I 4 HOH A 55 355 146 HOH HOH . I 4 HOH A 56 356 39 HOH HOH . I 4 HOH A 57 357 5 HOH HOH . I 4 HOH A 58 358 68 HOH HOH . I 4 HOH A 59 359 37 HOH HOH . I 4 HOH A 60 360 110 HOH HOH . I 4 HOH A 61 361 25 HOH HOH . I 4 HOH A 62 362 103 HOH HOH . I 4 HOH A 63 363 67 HOH HOH . I 4 HOH A 64 364 72 HOH HOH . I 4 HOH A 65 365 66 HOH HOH . I 4 HOH A 66 366 23 HOH HOH . I 4 HOH A 67 367 4 HOH HOH . I 4 HOH A 68 368 131 HOH HOH . I 4 HOH A 69 369 101 HOH HOH . I 4 HOH A 70 370 107 HOH HOH . I 4 HOH A 71 371 144 HOH HOH . I 4 HOH A 72 372 139 HOH HOH . I 4 HOH A 73 373 44 HOH HOH . I 4 HOH A 74 374 109 HOH HOH . I 4 HOH A 75 375 94 HOH HOH . I 4 HOH A 76 376 21 HOH HOH . I 4 HOH A 77 377 140 HOH HOH . I 4 HOH A 78 378 123 HOH HOH . I 4 HOH A 79 379 64 HOH HOH . I 4 HOH A 80 380 132 HOH HOH . I 4 HOH A 81 381 91 HOH HOH . I 4 HOH A 82 382 96 HOH HOH . I 4 HOH A 83 383 141 HOH HOH . I 4 HOH A 84 384 53 HOH HOH . I 4 HOH A 85 385 89 HOH HOH . I 4 HOH A 86 386 30 HOH HOH . I 4 HOH A 87 387 18 HOH HOH . I 4 HOH A 88 388 17 HOH HOH . I 4 HOH A 89 389 32 HOH HOH . I 4 HOH A 90 390 143 HOH HOH . I 4 HOH A 91 391 69 HOH HOH . I 4 HOH A 92 392 28 HOH HOH . I 4 HOH A 93 393 51 HOH HOH . I 4 HOH A 94 394 102 HOH HOH . I 4 HOH A 95 395 10 HOH HOH . I 4 HOH A 96 396 60 HOH HOH . I 4 HOH A 97 397 56 HOH HOH . I 4 HOH A 98 398 40 HOH HOH . I 4 HOH A 99 399 11 HOH HOH . I 4 HOH A 100 400 26 HOH HOH . I 4 HOH A 101 401 36 HOH HOH . I 4 HOH A 102 402 129 HOH HOH . I 4 HOH A 103 403 150 HOH HOH . I 4 HOH A 104 404 85 HOH HOH . I 4 HOH A 105 405 41 HOH HOH . I 4 HOH A 106 406 57 HOH HOH . I 4 HOH A 107 407 147 HOH HOH . I 4 HOH A 108 408 133 HOH HOH . I 4 HOH A 109 409 42 HOH HOH . I 4 HOH A 110 410 122 HOH HOH . I 4 HOH A 111 411 45 HOH HOH . I 4 HOH A 112 412 71 HOH HOH . I 4 HOH A 113 413 121 HOH HOH . I 4 HOH A 114 414 130 HOH HOH . I 4 HOH A 115 415 125 HOH HOH . I 4 HOH A 116 416 113 HOH HOH . I 4 HOH A 117 417 114 HOH HOH . I 4 HOH A 118 418 77 HOH HOH . I 4 HOH A 119 419 126 HOH HOH . I 4 HOH A 120 420 116 HOH HOH . I 4 HOH A 121 421 117 HOH HOH . I 4 HOH A 122 422 59 HOH HOH . I 4 HOH A 123 423 88 HOH HOH . I 4 HOH A 124 424 138 HOH HOH . I 4 HOH A 125 425 55 HOH HOH . I 4 HOH A 126 426 136 HOH HOH . I 4 HOH A 127 427 65 HOH HOH . I 4 HOH A 128 428 49 HOH HOH . I 4 HOH A 129 429 119 HOH HOH . I 4 HOH A 130 430 115 HOH HOH . I 4 HOH A 131 431 93 HOH HOH . I 4 HOH A 132 432 82 HOH HOH . I 4 HOH A 133 433 87 HOH HOH . I 4 HOH A 134 434 92 HOH HOH . I 4 HOH A 135 435 75 HOH HOH . I 4 HOH A 136 436 112 HOH HOH . I 4 HOH A 137 437 70 HOH HOH . I 4 HOH A 138 438 6 HOH HOH . I 4 HOH A 139 439 145 HOH HOH . I 4 HOH A 140 440 97 HOH HOH . I 4 HOH A 141 441 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.888 _atom_site.Cartn_y 7.654 _atom_site.Cartn_z -5.523 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #