data_6QY5 # _model_server_result.job_id W72tB8FUlppFHWNkaJ6HiA _model_server_result.datetime_utc '2025-06-27 00:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6QY5 # _exptl.entry_id 6QY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QY5 _cell.length_a 79.86 _cell.length_b 79.86 _cell.length_c 38.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc5 B NA NA . A NA 201 1_555 G O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 C NA NA . A NA 202 1_555 G O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc7 C NA NA . A NA 202 1_555 G O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6QY5 _atom_sites.fract_transf_matrix[1][1] 0.012522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 2 NA A 1 202 2 NA NA . D 3 CL A 1 203 1 CL CL . E 3 CL A 1 204 2 CL CL . F 4 EDO A 1 205 1 EDO EDO . G 5 HOH A 1 301 94 HOH HOH . G 5 HOH A 2 302 65 HOH HOH . G 5 HOH A 3 303 48 HOH HOH . G 5 HOH A 4 304 107 HOH HOH . G 5 HOH A 5 305 109 HOH HOH . G 5 HOH A 6 306 42 HOH HOH . G 5 HOH A 7 307 36 HOH HOH . G 5 HOH A 8 308 96 HOH HOH . G 5 HOH A 9 309 2 HOH HOH . G 5 HOH A 10 310 91 HOH HOH . G 5 HOH A 11 311 7 HOH HOH . G 5 HOH A 12 312 90 HOH HOH . G 5 HOH A 13 313 99 HOH HOH . G 5 HOH A 14 314 6 HOH HOH . G 5 HOH A 15 315 51 HOH HOH . G 5 HOH A 16 316 9 HOH HOH . G 5 HOH A 17 317 97 HOH HOH . G 5 HOH A 18 318 108 HOH HOH . G 5 HOH A 19 319 41 HOH HOH . G 5 HOH A 20 320 15 HOH HOH . G 5 HOH A 21 321 11 HOH HOH . G 5 HOH A 22 322 80 HOH HOH . G 5 HOH A 23 323 87 HOH HOH . G 5 HOH A 24 324 53 HOH HOH . G 5 HOH A 25 325 40 HOH HOH . G 5 HOH A 26 326 25 HOH HOH . G 5 HOH A 27 327 72 HOH HOH . G 5 HOH A 28 328 70 HOH HOH . G 5 HOH A 29 329 14 HOH HOH . G 5 HOH A 30 330 67 HOH HOH . G 5 HOH A 31 331 104 HOH HOH . G 5 HOH A 32 332 75 HOH HOH . G 5 HOH A 33 333 27 HOH HOH . G 5 HOH A 34 334 28 HOH HOH . G 5 HOH A 35 335 84 HOH HOH . G 5 HOH A 36 336 69 HOH HOH . G 5 HOH A 37 337 52 HOH HOH . G 5 HOH A 38 338 59 HOH HOH . G 5 HOH A 39 339 50 HOH HOH . G 5 HOH A 40 340 32 HOH HOH . G 5 HOH A 41 341 44 HOH HOH . G 5 HOH A 42 342 31 HOH HOH . G 5 HOH A 43 343 33 HOH HOH . G 5 HOH A 44 344 76 HOH HOH . G 5 HOH A 45 345 5 HOH HOH . G 5 HOH A 46 346 34 HOH HOH . G 5 HOH A 47 347 78 HOH HOH . G 5 HOH A 48 348 83 HOH HOH . G 5 HOH A 49 349 92 HOH HOH . G 5 HOH A 50 350 3 HOH HOH . G 5 HOH A 51 351 13 HOH HOH . G 5 HOH A 52 352 43 HOH HOH . G 5 HOH A 53 353 71 HOH HOH . G 5 HOH A 54 354 66 HOH HOH . G 5 HOH A 55 355 12 HOH HOH . G 5 HOH A 56 356 68 HOH HOH . G 5 HOH A 57 357 18 HOH HOH . G 5 HOH A 58 358 64 HOH HOH . G 5 HOH A 59 359 74 HOH HOH . G 5 HOH A 60 360 16 HOH HOH . G 5 HOH A 61 361 17 HOH HOH . G 5 HOH A 62 362 22 HOH HOH . G 5 HOH A 63 363 8 HOH HOH . G 5 HOH A 64 364 10 HOH HOH . G 5 HOH A 65 365 39 HOH HOH . G 5 HOH A 66 366 73 HOH HOH . G 5 HOH A 67 367 23 HOH HOH . G 5 HOH A 68 368 82 HOH HOH . G 5 HOH A 69 369 79 HOH HOH . G 5 HOH A 70 370 19 HOH HOH . G 5 HOH A 71 371 46 HOH HOH . G 5 HOH A 72 372 77 HOH HOH . G 5 HOH A 73 373 38 HOH HOH . G 5 HOH A 74 374 95 HOH HOH . G 5 HOH A 75 375 29 HOH HOH . G 5 HOH A 76 376 54 HOH HOH . G 5 HOH A 77 377 21 HOH HOH . G 5 HOH A 78 378 47 HOH HOH . G 5 HOH A 79 379 98 HOH HOH . G 5 HOH A 80 380 105 HOH HOH . G 5 HOH A 81 381 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -3.269 103.904 4.269 1 31.79 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 4 -3.665 104.532 3.047 1 44.85 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 4 -3.072 102.436 3.972 1 28.05 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 4 -4.244 101.98 3.291 1 29.25 ? O2 EDO 205 A 1 HETATM 5 H H11 EDO . . . F 4 -2.339 104.344 4.636 1 38.15 ? H11 EDO 205 A 1 HETATM 6 H H12 EDO . . . F 4 -4.042 104.035 5.029 1 38.15 ? H12 EDO 205 A 1 HETATM 7 H HO1 EDO . . . F 4 -3.801 105.478 3.2 1 53.82 ? HO1 EDO 205 A 1 HETATM 8 H H21 EDO . . . F 4 -2.19 102.294 3.343 1 33.66 ? H21 EDO 205 A 1 HETATM 9 H H22 EDO . . . F 4 -2.933 101.878 4.9 1 33.66 ? H22 EDO 205 A 1 HETATM 10 H HO2 EDO . . . F 4 -4.151 101.04 3.084 1 35.1 ? HO2 EDO 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #