data_6QY6 # _model_server_result.job_id i72h-WBsgzYXihlII41HEg _model_server_result.datetime_utc '2024-10-18 12:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6QY6 # _exptl.entry_id 6QY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QY6 _cell.length_a 70.031 _cell.length_b 70.031 _cell.length_c 291.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 122 n n C1 C2 GOL sing 123 n n C1 H11 GOL sing 124 n n C1 H12 GOL sing 125 n n O1 HO1 GOL sing 126 n n C2 O2 GOL sing 127 n n C2 C3 GOL sing 128 n n C2 H2 GOL sing 129 n n O2 HO2 GOL sing 130 n n C3 O3 GOL sing 131 n n C3 H31 GOL sing 132 n n C3 H32 GOL sing 133 n n O3 HO3 GOL sing 134 n n # _atom_sites.entry_id 6QY6 _atom_sites.fract_transf_matrix[1][1] 0.014279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 501 PO4 PO4 . C 3 GOL A 1 502 601 GOL GOL . D 3 GOL A 1 503 801 GOL GOL . E 4 ACT A 1 504 901 ACT ACT . F 4 ACT A 1 505 921 ACT ACT . G 4 ACT A 1 506 931 ACT ACT . H 5 HOH A 1 601 383 HOH HOH . H 5 HOH A 2 602 233 HOH HOH . H 5 HOH A 3 603 157 HOH HOH . H 5 HOH A 4 604 172 HOH HOH . H 5 HOH A 5 605 33 HOH HOH . H 5 HOH A 6 606 100 HOH HOH . H 5 HOH A 7 607 94 HOH HOH . H 5 HOH A 8 608 303 HOH HOH . H 5 HOH A 9 609 340 HOH HOH . H 5 HOH A 10 610 59 HOH HOH . H 5 HOH A 11 611 15 HOH HOH . H 5 HOH A 12 612 98 HOH HOH . H 5 HOH A 13 613 143 HOH HOH . H 5 HOH A 14 614 232 HOH HOH . H 5 HOH A 15 615 226 HOH HOH . H 5 HOH A 16 616 80 HOH HOH . H 5 HOH A 17 617 112 HOH HOH . H 5 HOH A 18 618 73 HOH HOH . H 5 HOH A 19 619 168 HOH HOH . H 5 HOH A 20 620 111 HOH HOH . H 5 HOH A 21 621 315 HOH HOH . H 5 HOH A 22 622 85 HOH HOH . H 5 HOH A 23 623 63 HOH HOH . H 5 HOH A 24 624 127 HOH HOH . H 5 HOH A 25 625 68 HOH HOH . H 5 HOH A 26 626 257 HOH HOH . H 5 HOH A 27 627 2 HOH HOH . H 5 HOH A 28 628 220 HOH HOH . H 5 HOH A 29 629 39 HOH HOH . H 5 HOH A 30 630 41 HOH HOH . H 5 HOH A 31 631 9 HOH HOH . H 5 HOH A 32 632 371 HOH HOH . H 5 HOH A 33 633 275 HOH HOH . H 5 HOH A 34 634 42 HOH HOH . H 5 HOH A 35 635 19 HOH HOH . H 5 HOH A 36 636 306 HOH HOH . H 5 HOH A 37 637 171 HOH HOH . H 5 HOH A 38 638 61 HOH HOH . H 5 HOH A 39 639 123 HOH HOH . H 5 HOH A 40 640 154 HOH HOH . H 5 HOH A 41 641 190 HOH HOH . H 5 HOH A 42 642 65 HOH HOH . H 5 HOH A 43 643 278 HOH HOH . H 5 HOH A 44 644 131 HOH HOH . H 5 HOH A 45 645 175 HOH HOH . H 5 HOH A 46 646 8 HOH HOH . H 5 HOH A 47 647 44 HOH HOH . H 5 HOH A 48 648 3 HOH HOH . H 5 HOH A 49 649 353 HOH HOH . H 5 HOH A 50 650 72 HOH HOH . H 5 HOH A 51 651 158 HOH HOH . H 5 HOH A 52 652 185 HOH HOH . H 5 HOH A 53 653 381 HOH HOH . H 5 HOH A 54 654 5 HOH HOH . H 5 HOH A 55 655 4 HOH HOH . H 5 HOH A 56 656 58 HOH HOH . H 5 HOH A 57 657 179 HOH HOH . H 5 HOH A 58 658 76 HOH HOH . H 5 HOH A 59 659 141 HOH HOH . H 5 HOH A 60 660 248 HOH HOH . H 5 HOH A 61 661 120 HOH HOH . H 5 HOH A 62 662 106 HOH HOH . H 5 HOH A 63 663 10 HOH HOH . H 5 HOH A 64 664 302 HOH HOH . H 5 HOH A 65 665 6 HOH HOH . H 5 HOH A 66 666 337 HOH HOH . H 5 HOH A 67 667 16 HOH HOH . H 5 HOH A 68 668 262 HOH HOH . H 5 HOH A 69 669 160 HOH HOH . H 5 HOH A 70 670 307 HOH HOH . H 5 HOH A 71 671 364 HOH HOH . H 5 HOH A 72 672 151 HOH HOH . H 5 HOH A 73 673 318 HOH HOH . H 5 HOH A 74 674 105 HOH HOH . H 5 HOH A 75 675 89 HOH HOH . H 5 HOH A 76 676 22 HOH HOH . H 5 HOH A 77 677 20 HOH HOH . H 5 HOH A 78 678 109 HOH HOH . H 5 HOH A 79 679 18 HOH HOH . H 5 HOH A 80 680 27 HOH HOH . H 5 HOH A 81 681 91 HOH HOH . H 5 HOH A 82 682 11 HOH HOH . H 5 HOH A 83 683 88 HOH HOH . H 5 HOH A 84 684 133 HOH HOH . H 5 HOH A 85 685 375 HOH HOH . H 5 HOH A 86 686 40 HOH HOH . H 5 HOH A 87 687 38 HOH HOH . H 5 HOH A 88 688 50 HOH HOH . H 5 HOH A 89 689 17 HOH HOH . H 5 HOH A 90 690 356 HOH HOH . H 5 HOH A 91 691 69 HOH HOH . H 5 HOH A 92 692 24 HOH HOH . H 5 HOH A 93 693 53 HOH HOH . H 5 HOH A 94 694 28 HOH HOH . H 5 HOH A 95 695 46 HOH HOH . H 5 HOH A 96 696 87 HOH HOH . H 5 HOH A 97 697 148 HOH HOH . H 5 HOH A 98 698 130 HOH HOH . H 5 HOH A 99 699 107 HOH HOH . H 5 HOH A 100 700 182 HOH HOH . H 5 HOH A 101 701 52 HOH HOH . H 5 HOH A 102 702 162 HOH HOH . H 5 HOH A 103 703 84 HOH HOH . H 5 HOH A 104 704 57 HOH HOH . H 5 HOH A 105 705 1 HOH HOH . H 5 HOH A 106 706 67 HOH HOH . H 5 HOH A 107 707 128 HOH HOH . H 5 HOH A 108 708 204 HOH HOH . H 5 HOH A 109 709 43 HOH HOH . H 5 HOH A 110 710 14 HOH HOH . H 5 HOH A 111 711 269 HOH HOH . H 5 HOH A 112 712 29 HOH HOH . H 5 HOH A 113 713 12 HOH HOH . H 5 HOH A 114 714 201 HOH HOH . H 5 HOH A 115 715 32 HOH HOH . H 5 HOH A 116 716 203 HOH HOH . H 5 HOH A 117 717 102 HOH HOH . H 5 HOH A 118 718 13 HOH HOH . H 5 HOH A 119 719 342 HOH HOH . H 5 HOH A 120 720 110 HOH HOH . H 5 HOH A 121 721 71 HOH HOH . H 5 HOH A 122 722 60 HOH HOH . H 5 HOH A 123 723 26 HOH HOH . H 5 HOH A 124 724 145 HOH HOH . H 5 HOH A 125 725 7 HOH HOH . H 5 HOH A 126 726 139 HOH HOH . H 5 HOH A 127 727 92 HOH HOH . H 5 HOH A 128 728 99 HOH HOH . H 5 HOH A 129 729 156 HOH HOH . H 5 HOH A 130 730 155 HOH HOH . H 5 HOH A 131 731 83 HOH HOH . H 5 HOH A 132 732 49 HOH HOH . H 5 HOH A 133 733 167 HOH HOH . H 5 HOH A 134 734 159 HOH HOH . H 5 HOH A 135 735 77 HOH HOH . H 5 HOH A 136 736 372 HOH HOH . H 5 HOH A 137 737 195 HOH HOH . H 5 HOH A 138 738 37 HOH HOH . H 5 HOH A 139 739 81 HOH HOH . H 5 HOH A 140 740 173 HOH HOH . H 5 HOH A 141 741 255 HOH HOH . H 5 HOH A 142 742 54 HOH HOH . H 5 HOH A 143 743 48 HOH HOH . H 5 HOH A 144 744 169 HOH HOH . H 5 HOH A 145 745 200 HOH HOH . H 5 HOH A 146 746 35 HOH HOH . H 5 HOH A 147 747 47 HOH HOH . H 5 HOH A 148 748 70 HOH HOH . H 5 HOH A 149 749 97 HOH HOH . H 5 HOH A 150 750 78 HOH HOH . H 5 HOH A 151 751 121 HOH HOH . H 5 HOH A 152 752 217 HOH HOH . H 5 HOH A 153 753 183 HOH HOH . H 5 HOH A 154 754 228 HOH HOH . H 5 HOH A 155 755 82 HOH HOH . H 5 HOH A 156 756 343 HOH HOH . H 5 HOH A 157 757 104 HOH HOH . H 5 HOH A 158 758 304 HOH HOH . H 5 HOH A 159 759 90 HOH HOH . H 5 HOH A 160 760 66 HOH HOH . H 5 HOH A 161 761 114 HOH HOH . H 5 HOH A 162 762 23 HOH HOH . H 5 HOH A 163 763 119 HOH HOH . H 5 HOH A 164 764 142 HOH HOH . H 5 HOH A 165 765 174 HOH HOH . H 5 HOH A 166 766 177 HOH HOH . H 5 HOH A 167 767 45 HOH HOH . H 5 HOH A 168 768 194 HOH HOH . H 5 HOH A 169 769 74 HOH HOH . H 5 HOH A 170 770 75 HOH HOH . H 5 HOH A 171 771 380 HOH HOH . H 5 HOH A 172 772 245 HOH HOH . H 5 HOH A 173 773 197 HOH HOH . H 5 HOH A 174 774 115 HOH HOH . H 5 HOH A 175 775 288 HOH HOH . H 5 HOH A 176 776 51 HOH HOH . H 5 HOH A 177 777 56 HOH HOH . H 5 HOH A 178 778 132 HOH HOH . H 5 HOH A 179 779 36 HOH HOH . H 5 HOH A 180 780 34 HOH HOH . H 5 HOH A 181 781 339 HOH HOH . H 5 HOH A 182 782 101 HOH HOH . H 5 HOH A 183 783 237 HOH HOH . H 5 HOH A 184 784 284 HOH HOH . H 5 HOH A 185 785 135 HOH HOH . H 5 HOH A 186 786 30 HOH HOH . H 5 HOH A 187 787 129 HOH HOH . H 5 HOH A 188 788 25 HOH HOH . H 5 HOH A 189 789 301 HOH HOH . H 5 HOH A 190 790 31 HOH HOH . H 5 HOH A 191 791 305 HOH HOH . H 5 HOH A 192 792 95 HOH HOH . H 5 HOH A 193 793 261 HOH HOH . H 5 HOH A 194 794 86 HOH HOH . H 5 HOH A 195 795 116 HOH HOH . H 5 HOH A 196 796 384 HOH HOH . H 5 HOH A 197 797 366 HOH HOH . H 5 HOH A 198 798 124 HOH HOH . H 5 HOH A 199 799 103 HOH HOH . H 5 HOH A 200 800 362 HOH HOH . H 5 HOH A 201 801 125 HOH HOH . H 5 HOH A 202 802 21 HOH HOH . H 5 HOH A 203 803 321 HOH HOH . H 5 HOH A 204 804 314 HOH HOH . H 5 HOH A 205 805 208 HOH HOH . H 5 HOH A 206 806 150 HOH HOH . H 5 HOH A 207 807 79 HOH HOH . H 5 HOH A 208 808 122 HOH HOH . H 5 HOH A 209 809 313 HOH HOH . H 5 HOH A 210 810 252 HOH HOH . H 5 HOH A 211 811 206 HOH HOH . H 5 HOH A 212 812 382 HOH HOH . H 5 HOH A 213 813 363 HOH HOH . H 5 HOH A 214 814 184 HOH HOH . H 5 HOH A 215 815 270 HOH HOH . H 5 HOH A 216 816 355 HOH HOH . H 5 HOH A 217 817 113 HOH HOH . H 5 HOH A 218 818 126 HOH HOH . H 5 HOH A 219 819 369 HOH HOH . H 5 HOH A 220 820 243 HOH HOH . H 5 HOH A 221 821 310 HOH HOH . H 5 HOH A 222 822 186 HOH HOH . H 5 HOH A 223 823 62 HOH HOH . H 5 HOH A 224 824 118 HOH HOH . H 5 HOH A 225 825 144 HOH HOH . H 5 HOH A 226 826 117 HOH HOH . H 5 HOH A 227 827 264 HOH HOH . H 5 HOH A 228 828 202 HOH HOH . H 5 HOH A 229 829 282 HOH HOH . H 5 HOH A 230 830 166 HOH HOH . H 5 HOH A 231 831 361 HOH HOH . H 5 HOH A 232 832 55 HOH HOH . H 5 HOH A 233 833 163 HOH HOH . H 5 HOH A 234 834 134 HOH HOH . H 5 HOH A 235 835 108 HOH HOH . H 5 HOH A 236 836 187 HOH HOH . H 5 HOH A 237 837 242 HOH HOH . H 5 HOH A 238 838 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 40.144 14.427 65.057 1 41.95 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 3 39.869 13.72 66.235 1 39.39 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 3 41.228 15.484 65.296 1 40.92 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 3 40.807 16.431 66.25 1 39.22 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 3 42.547 14.881 65.783 1 41.79 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 3 43.451 15.92 66.087 1 43.23 ? O3 GOL 503 A 1 HETATM 7 H H11 GOL . . . D 3 40.45 13.806 64.378 1 50.33 ? H11 GOL 503 A 1 HETATM 8 H H12 GOL . . . D 3 39.334 14.865 64.753 1 50.33 ? H12 GOL 503 A 1 HETATM 9 H HO1 GOL . . . D 3 40.544 13.249 66.447 1 47.27 ? HO1 GOL 503 A 1 HETATM 10 H H2 GOL . . . D 3 41.376 15.905 64.435 1 49.1 ? H2 GOL 503 A 1 HETATM 11 H HO2 GOL . . . D 3 40.177 16.9 65.926 1 47.06 ? HO2 GOL 503 A 1 HETATM 12 H H31 GOL . . . D 3 42.922 14.319 65.087 1 50.15 ? H31 GOL 503 A 1 HETATM 13 H H32 GOL . . . D 3 42.386 14.348 66.577 1 50.15 ? H32 GOL 503 A 1 HETATM 14 H HO3 GOL . . . D 3 43.997 15.655 66.682 1 51.88 ? HO3 GOL 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #