data_6QYK # _model_server_result.job_id Uah1oG3Tl5KQaIEbFn2uBA _model_server_result.datetime_utc '2024-11-22 11:11:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6QYK # _exptl.entry_id 6QYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.422 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]oxypropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QYK _cell.length_a 97.545 _cell.length_b 133.748 _cell.length_c 37.338 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 1322 MAL 2 n B GLC 2 B 2 GLC A 1322 MAL # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLC _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.435 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C19 H17 N3 O3 S' _chem_comp.formula_weight 367.422 _chem_comp.id JLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]oxypropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C24 JLB doub 197 n y C26 N25 JLB sing 198 n y C24 C22 JLB sing 199 n y O08 C06 JLB doub 200 n n O07 C06 JLB sing 201 n n N25 C21 JLB sing 202 n y C06 C04 JLB sing 203 n n C22 C21 JLB doub 204 n y C22 C23 JLB sing 205 n y C21 C20 JLB sing 206 n y C05 C04 JLB sing 207 n n C23 C18 JLB doub 208 n y C04 O03 JLB sing 209 n n O03 C02 JLB sing 210 n n C20 C19 JLB doub 211 n y C18 C19 JLB sing 212 n y C18 C10 JLB sing 213 n n C02 N01 JLB doub 214 n y C02 C09 JLB sing 215 n y N01 C17 JLB sing 216 n y C10 C09 JLB sing 217 n y C10 C11 JLB doub 218 n y C09 C15 JLB doub 219 n y C17 N16 JLB doub 220 n y C11 C12 JLB sing 221 n n C11 S14 JLB sing 222 n y C15 N16 JLB sing 223 n y C15 S14 JLB sing 224 n y C13 C12 JLB sing 225 n n C13 H1 JLB sing 226 n n C13 H2 JLB sing 227 n n C13 H3 JLB sing 228 n n C17 H4 JLB sing 229 n n C20 H5 JLB sing 230 n n C24 H6 JLB sing 231 n n C26 H7 JLB sing 232 n n C04 H8 JLB sing 233 n n C05 H9 JLB sing 234 n n C05 H10 JLB sing 235 n n C05 H11 JLB sing 236 n n O07 H12 JLB sing 237 n n C12 H13 JLB sing 238 n n C12 H14 JLB sing 239 n n C19 H15 JLB sing 240 n n C23 H16 JLB sing 241 n n N25 H17 JLB sing 242 n n # _atom_sites.entry_id 6QYK _atom_sites.fract_transf_matrix[1][1] 0.010252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 JLB A 1 401 1321 JLB LIG . D 4 HOH A 1 501 2032 HOH HOH . D 4 HOH A 2 502 2025 HOH HOH . D 4 HOH A 3 503 2077 HOH HOH . D 4 HOH A 4 504 2031 HOH HOH . D 4 HOH A 5 505 2058 HOH HOH . D 4 HOH A 6 506 2142 HOH HOH . D 4 HOH A 7 507 2026 HOH HOH . D 4 HOH A 8 508 2114 HOH HOH . D 4 HOH A 9 509 2135 HOH HOH . D 4 HOH A 10 510 2092 HOH HOH . D 4 HOH A 11 511 2055 HOH HOH . D 4 HOH A 12 512 2043 HOH HOH . D 4 HOH A 13 513 2107 HOH HOH . D 4 HOH A 14 514 2071 HOH HOH . D 4 HOH A 15 515 2126 HOH HOH . D 4 HOH A 16 516 2105 HOH HOH . D 4 HOH A 17 517 2138 HOH HOH . D 4 HOH A 18 518 2073 HOH HOH . D 4 HOH A 19 519 2056 HOH HOH . D 4 HOH A 20 520 2015 HOH HOH . D 4 HOH A 21 521 2090 HOH HOH . D 4 HOH A 22 522 2095 HOH HOH . D 4 HOH A 23 523 2019 HOH HOH . D 4 HOH A 24 524 2003 HOH HOH . D 4 HOH A 25 525 2063 HOH HOH . D 4 HOH A 26 526 2014 HOH HOH . D 4 HOH A 27 527 2109 HOH HOH . D 4 HOH A 28 528 2023 HOH HOH . D 4 HOH A 29 529 2048 HOH HOH . D 4 HOH A 30 530 2087 HOH HOH . D 4 HOH A 31 531 2099 HOH HOH . D 4 HOH A 32 532 2134 HOH HOH . D 4 HOH A 33 533 2060 HOH HOH . D 4 HOH A 34 534 2122 HOH HOH . D 4 HOH A 35 535 2079 HOH HOH . D 4 HOH A 36 536 2054 HOH HOH . D 4 HOH A 37 537 2040 HOH HOH . D 4 HOH A 38 538 2137 HOH HOH . D 4 HOH A 39 539 2052 HOH HOH . D 4 HOH A 40 540 2088 HOH HOH . D 4 HOH A 41 541 2103 HOH HOH . D 4 HOH A 42 542 2062 HOH HOH . D 4 HOH A 43 543 2094 HOH HOH . D 4 HOH A 44 544 2132 HOH HOH . D 4 HOH A 45 545 2133 HOH HOH . D 4 HOH A 46 546 2130 HOH HOH . D 4 HOH A 47 547 2117 HOH HOH . D 4 HOH A 48 548 2066 HOH HOH . D 4 HOH A 49 549 2084 HOH HOH . D 4 HOH A 50 550 2104 HOH HOH . D 4 HOH A 51 551 2098 HOH HOH . D 4 HOH A 52 552 2131 HOH HOH . D 4 HOH A 53 553 2017 HOH HOH . D 4 HOH A 54 554 2050 HOH HOH . D 4 HOH A 55 555 2001 HOH HOH . D 4 HOH A 56 556 2047 HOH HOH . D 4 HOH A 57 557 2067 HOH HOH . D 4 HOH A 58 558 2013 HOH HOH . D 4 HOH A 59 559 2125 HOH HOH . D 4 HOH A 60 560 2035 HOH HOH . D 4 HOH A 61 561 2113 HOH HOH . D 4 HOH A 62 562 2074 HOH HOH . D 4 HOH A 63 563 2121 HOH HOH . D 4 HOH A 64 564 2081 HOH HOH . D 4 HOH A 65 565 2072 HOH HOH . D 4 HOH A 66 566 2027 HOH HOH . D 4 HOH A 67 567 2129 HOH HOH . D 4 HOH A 68 568 2042 HOH HOH . D 4 HOH A 69 569 2075 HOH HOH . D 4 HOH A 70 570 2049 HOH HOH . D 4 HOH A 71 571 2085 HOH HOH . D 4 HOH A 72 572 2033 HOH HOH . D 4 HOH A 73 573 2110 HOH HOH . D 4 HOH A 74 574 2128 HOH HOH . D 4 HOH A 75 575 2076 HOH HOH . D 4 HOH A 76 576 2100 HOH HOH . D 4 HOH A 77 577 2024 HOH HOH . D 4 HOH A 78 578 2093 HOH HOH . D 4 HOH A 79 579 2053 HOH HOH . D 4 HOH A 80 580 2120 HOH HOH . D 4 HOH A 81 581 2124 HOH HOH . D 4 HOH A 82 582 2036 HOH HOH . D 4 HOH A 83 583 2127 HOH HOH . D 4 HOH A 84 584 2018 HOH HOH . D 4 HOH A 85 585 2028 HOH HOH . D 4 HOH A 86 586 2083 HOH HOH . D 4 HOH A 87 587 2097 HOH HOH . D 4 HOH A 88 588 2136 HOH HOH . D 4 HOH A 89 589 2030 HOH HOH . D 4 HOH A 90 590 2038 HOH HOH . D 4 HOH A 91 591 2078 HOH HOH . D 4 HOH A 92 592 2046 HOH HOH . D 4 HOH A 93 593 2112 HOH HOH . D 4 HOH A 94 594 2080 HOH HOH . D 4 HOH A 95 595 2007 HOH HOH . D 4 HOH A 96 596 2029 HOH HOH . D 4 HOH A 97 597 2065 HOH HOH . D 4 HOH A 98 598 2086 HOH HOH . D 4 HOH A 99 599 2123 HOH HOH . D 4 HOH A 100 600 2116 HOH HOH . D 4 HOH A 101 601 2118 HOH HOH . D 4 HOH A 102 602 2069 HOH HOH . D 4 HOH A 103 603 2059 HOH HOH . D 4 HOH A 104 604 2034 HOH HOH . D 4 HOH A 105 605 2006 HOH HOH . D 4 HOH A 106 606 2051 HOH HOH . D 4 HOH A 107 607 2108 HOH HOH . D 4 HOH A 108 608 2002 HOH HOH . D 4 HOH A 109 609 2037 HOH HOH . D 4 HOH A 110 610 2140 HOH HOH . D 4 HOH A 111 611 2022 HOH HOH . D 4 HOH A 112 612 2111 HOH HOH . D 4 HOH A 113 613 2061 HOH HOH . D 4 HOH A 114 614 2091 HOH HOH . D 4 HOH A 115 615 2064 HOH HOH . D 4 HOH A 116 616 2045 HOH HOH . D 4 HOH A 117 617 2041 HOH HOH . D 4 HOH A 118 618 2070 HOH HOH . D 4 HOH A 119 619 2004 HOH HOH . D 4 HOH A 120 620 2068 HOH HOH . D 4 HOH A 121 621 2119 HOH HOH . D 4 HOH A 122 622 2012 HOH HOH . D 4 HOH A 123 623 2115 HOH HOH . D 4 HOH A 124 624 2106 HOH HOH . D 4 HOH A 125 625 2008 HOH HOH . D 4 HOH A 126 626 2020 HOH HOH . D 4 HOH A 127 627 2139 HOH HOH . D 4 HOH A 128 628 2016 HOH HOH . D 4 HOH A 129 629 2089 HOH HOH . D 4 HOH A 130 630 2141 HOH HOH . D 4 HOH A 131 631 2096 HOH HOH . D 4 HOH A 132 632 2010 HOH HOH . D 4 HOH A 133 633 2044 HOH HOH . D 4 HOH A 134 634 2082 HOH HOH . D 4 HOH A 135 635 2021 HOH HOH . D 4 HOH A 136 636 2005 HOH HOH . D 4 HOH A 137 637 2039 HOH HOH . D 4 HOH A 138 638 2057 HOH HOH . D 4 HOH A 139 639 2009 HOH HOH . D 4 HOH A 140 640 2011 HOH HOH . D 4 HOH A 141 641 2101 HOH HOH . D 4 HOH A 142 642 2102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JLB . . . C 3 12.009 56.338 -3.83 1 50.91 ? C10 JLB 401 A 1 HETATM 2 C C13 JLB . . . C 3 8.757 55.535 -2.653 1 48.4 ? C13 JLB 401 A 1 HETATM 3 C C15 JLB . . . C 3 12.944 54.568 -2.811 1 51.78 ? C15 JLB 401 A 1 HETATM 4 C C17 JLB . . . C 3 14.993 53.625 -3.294 1 51.03 ? C17 JLB 401 A 1 HETATM 5 C C20 JLB . . . C 3 11.176 59.82 -4.971 1 52.58 ? C20 JLB 401 A 1 HETATM 6 C C21 JLB . . . C 3 11.188 59.652 -6.35 1 59.26 ? C21 JLB 401 A 1 HETATM 7 C C22 JLB . . . C 3 11.453 58.405 -6.895 1 57.91 ? C22 JLB 401 A 1 HETATM 8 C C24 JLB . . . C 3 11.381 58.528 -8.261 1 61.84 ? C24 JLB 401 A 1 HETATM 9 C C26 JLB . . . C 3 11.078 59.854 -8.526 1 59.2 ? C26 JLB 401 A 1 HETATM 10 N N01 JLB . . . C 3 15.188 54.517 -4.249 1 55.89 ? N01 JLB 401 A 1 HETATM 11 C C02 JLB . . . C 3 14.262 55.442 -4.517 1 54.31 ? C02 JLB 401 A 1 HETATM 12 O O03 JLB . . . C 3 14.457 56.323 -5.472 1 59.2 ? O03 JLB 401 A 1 HETATM 13 C C04 JLB . . . C 3 15.75 56.443 -6.012 1 69.96 ? C04 JLB 401 A 1 HETATM 14 C C05 JLB . . . C 3 15.922 57.912 -6.3 1 73.45 ? C05 JLB 401 A 1 HETATM 15 C C06 JLB . . . C 3 15.801 55.709 -7.341 1 66.65 ? C06 JLB 401 A 1 HETATM 16 O O07 JLB . . . C 3 16.831 55.092 -7.571 1 67.07 ? O07 JLB 401 A 1 HETATM 17 O O08 JLB . . . C 3 14.831 55.756 -8.122 1 69.25 ? O08 JLB 401 A 1 HETATM 18 C C09 JLB . . . C 3 13.098 55.499 -3.802 1 51.81 ? C09 JLB 401 A 1 HETATM 19 C C11 JLB . . . C 3 11.13 55.964 -2.862 1 48.64 ? C11 JLB 401 A 1 HETATM 20 C C12 JLB . . . C 3 9.8 56.632 -2.626 1 45.18 ? C12 JLB 401 A 1 HETATM 21 S S14 JLB . . . C 3 11.635 54.691 -2.046 1 49.8 ? S14 JLB 401 A 1 HETATM 22 N N16 JLB . . . C 3 13.878 53.651 -2.589 1 49.79 ? N16 JLB 401 A 1 HETATM 23 C C18 JLB . . . C 3 11.738 57.481 -4.698 1 52.33 ? C18 JLB 401 A 1 HETATM 24 C C19 JLB . . . C 3 11.475 58.742 -4.15 1 53.08 ? C19 JLB 401 A 1 HETATM 25 C C23 JLB . . . C 3 11.718 57.32 -6.084 1 59.45 ? C23 JLB 401 A 1 HETATM 26 N N25 JLB . . . C 3 10.964 60.5 -7.359 1 58.34 ? N25 JLB 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #