data_6QYL # _model_server_result.job_id eHVPTsjCFAUuszFwpkHNXQ _model_server_result.datetime_utc '2024-11-28 07:38:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6QYL # _exptl.entry_id 6QYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QYL _cell.length_a 100.12 _cell.length_b 136.26 _cell.length_c 37.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 1323 MAL 2 n B GLC 2 B 2 GLC A 1323 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 sing metalc ? metalc1 D NA NA . A NA 403 1_555 E O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc2 D NA NA . A NA 403 1_555 E O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc3 D NA NA . A NA 403 1_555 E O HOH . A HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc4 D NA NA . A NA 403 1_555 E O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc5 D NA NA . A NA 403 1_555 E O HOH . A HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QYL _atom_sites.fract_transf_matrix[1][1] 0.009988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 JLE A 1 401 1322 JLE 8C4 . D 4 NA A 1 403 1324 NA NA . E 5 HOH A 1 501 2106 HOH HOH . E 5 HOH A 2 502 2097 HOH HOH . E 5 HOH A 3 503 2080 HOH HOH . E 5 HOH A 4 504 2044 HOH HOH . E 5 HOH A 5 505 2178 HOH HOH . E 5 HOH A 6 506 2166 HOH HOH . E 5 HOH A 7 507 2056 HOH HOH . E 5 HOH A 8 508 2026 HOH HOH . E 5 HOH A 9 509 2051 HOH HOH . E 5 HOH A 10 510 2159 HOH HOH . E 5 HOH A 11 511 2129 HOH HOH . E 5 HOH A 12 512 2015 HOH HOH . E 5 HOH A 13 513 2012 HOH HOH . E 5 HOH A 14 514 2203 HOH HOH . E 5 HOH A 15 515 2220 HOH HOH . E 5 HOH A 16 516 2109 HOH HOH . E 5 HOH A 17 517 2117 HOH HOH . E 5 HOH A 18 518 2186 HOH HOH . E 5 HOH A 19 519 2154 HOH HOH . E 5 HOH A 20 520 2219 HOH HOH . E 5 HOH A 21 521 2019 HOH HOH . E 5 HOH A 22 522 2172 HOH HOH . E 5 HOH A 23 523 2110 HOH HOH . E 5 HOH A 24 524 2160 HOH HOH . E 5 HOH A 25 525 2073 HOH HOH . E 5 HOH A 26 526 2020 HOH HOH . E 5 HOH A 27 527 2099 HOH HOH . E 5 HOH A 28 528 2162 HOH HOH . E 5 HOH A 29 529 2112 HOH HOH . E 5 HOH A 30 530 2150 HOH HOH . E 5 HOH A 31 531 2121 HOH HOH . E 5 HOH A 32 532 2122 HOH HOH . E 5 HOH A 33 533 2140 HOH HOH . E 5 HOH A 34 534 2169 HOH HOH . E 5 HOH A 35 535 2013 HOH HOH . E 5 HOH A 36 536 2107 HOH HOH . E 5 HOH A 37 537 2002 HOH HOH . E 5 HOH A 38 538 2063 HOH HOH . E 5 HOH A 39 539 2007 HOH HOH . E 5 HOH A 40 540 2095 HOH HOH . E 5 HOH A 41 541 2142 HOH HOH . E 5 HOH A 42 542 2224 HOH HOH . E 5 HOH A 43 543 2130 HOH HOH . E 5 HOH A 44 544 2200 HOH HOH . E 5 HOH A 45 545 2155 HOH HOH . E 5 HOH A 46 546 2092 HOH HOH . E 5 HOH A 47 547 2066 HOH HOH . E 5 HOH A 48 548 2003 HOH HOH . E 5 HOH A 49 549 2201 HOH HOH . E 5 HOH A 50 550 2062 HOH HOH . E 5 HOH A 51 551 2058 HOH HOH . E 5 HOH A 52 552 2189 HOH HOH . E 5 HOH A 53 553 2023 HOH HOH . E 5 HOH A 54 554 2215 HOH HOH . E 5 HOH A 55 555 2145 HOH HOH . E 5 HOH A 56 556 2043 HOH HOH . E 5 HOH A 57 557 2045 HOH HOH . E 5 HOH A 58 558 2177 HOH HOH . E 5 HOH A 59 559 2167 HOH HOH . E 5 HOH A 60 560 2079 HOH HOH . E 5 HOH A 61 561 2221 HOH HOH . E 5 HOH A 62 562 2036 HOH HOH . E 5 HOH A 63 563 2207 HOH HOH . E 5 HOH A 64 564 2223 HOH HOH . E 5 HOH A 65 565 2061 HOH HOH . E 5 HOH A 66 566 2064 HOH HOH . E 5 HOH A 67 567 2156 HOH HOH . E 5 HOH A 68 568 2138 HOH HOH . E 5 HOH A 69 569 2176 HOH HOH . E 5 HOH A 70 570 2225 HOH HOH . E 5 HOH A 71 571 2059 HOH HOH . E 5 HOH A 72 572 2206 HOH HOH . E 5 HOH A 73 573 2213 HOH HOH . E 5 HOH A 74 574 2067 HOH HOH . E 5 HOH A 75 575 2209 HOH HOH . E 5 HOH A 76 576 2173 HOH HOH . E 5 HOH A 77 577 2184 HOH HOH . E 5 HOH A 78 578 2227 HOH HOH . E 5 HOH A 79 579 2065 HOH HOH . E 5 HOH A 80 580 2192 HOH HOH . E 5 HOH A 81 581 2158 HOH HOH . E 5 HOH A 82 582 2057 HOH HOH . E 5 HOH A 83 583 2102 HOH HOH . E 5 HOH A 84 584 2187 HOH HOH . E 5 HOH A 85 585 2179 HOH HOH . E 5 HOH A 86 586 2211 HOH HOH . E 5 HOH A 87 587 2199 HOH HOH . E 5 HOH A 88 588 2046 HOH HOH . E 5 HOH A 89 589 2171 HOH HOH . E 5 HOH A 90 590 2004 HOH HOH . E 5 HOH A 91 591 2070 HOH HOH . E 5 HOH A 92 592 2114 HOH HOH . E 5 HOH A 93 593 2039 HOH HOH . E 5 HOH A 94 594 2165 HOH HOH . E 5 HOH A 95 595 2124 HOH HOH . E 5 HOH A 96 596 2016 HOH HOH . E 5 HOH A 97 597 2087 HOH HOH . E 5 HOH A 98 598 2205 HOH HOH . E 5 HOH A 99 599 2101 HOH HOH . E 5 HOH A 100 600 2113 HOH HOH . E 5 HOH A 101 601 2175 HOH HOH . E 5 HOH A 102 602 2141 HOH HOH . E 5 HOH A 103 603 2050 HOH HOH . E 5 HOH A 104 604 1 HOH HOH . E 5 HOH A 105 605 2038 HOH HOH . E 5 HOH A 106 606 2181 HOH HOH . E 5 HOH A 107 607 2131 HOH HOH . E 5 HOH A 108 608 2053 HOH HOH . E 5 HOH A 109 609 2017 HOH HOH . E 5 HOH A 110 610 2105 HOH HOH . E 5 HOH A 111 611 2208 HOH HOH . E 5 HOH A 112 612 2180 HOH HOH . E 5 HOH A 113 613 2153 HOH HOH . E 5 HOH A 114 614 2135 HOH HOH . E 5 HOH A 115 615 2034 HOH HOH . E 5 HOH A 116 616 2230 HOH HOH . E 5 HOH A 117 617 2086 HOH HOH . E 5 HOH A 118 618 2119 HOH HOH . E 5 HOH A 119 619 2216 HOH HOH . E 5 HOH A 120 620 2148 HOH HOH . E 5 HOH A 121 621 2068 HOH HOH . E 5 HOH A 122 622 2194 HOH HOH . E 5 HOH A 123 623 2024 HOH HOH . E 5 HOH A 124 624 2037 HOH HOH . E 5 HOH A 125 625 2083 HOH HOH . E 5 HOH A 126 626 2161 HOH HOH . E 5 HOH A 127 627 2191 HOH HOH . E 5 HOH A 128 628 2001 HOH HOH . E 5 HOH A 129 629 2143 HOH HOH . E 5 HOH A 130 630 2120 HOH HOH . E 5 HOH A 131 631 2214 HOH HOH . E 5 HOH A 132 632 2090 HOH HOH . E 5 HOH A 133 633 2152 HOH HOH . E 5 HOH A 134 634 2164 HOH HOH . E 5 HOH A 135 635 2033 HOH HOH . E 5 HOH A 136 636 2212 HOH HOH . E 5 HOH A 137 637 2134 HOH HOH . E 5 HOH A 138 638 2170 HOH HOH . E 5 HOH A 139 639 2168 HOH HOH . E 5 HOH A 140 640 2226 HOH HOH . E 5 HOH A 141 641 2006 HOH HOH . E 5 HOH A 142 642 2229 HOH HOH . E 5 HOH A 143 643 2149 HOH HOH . E 5 HOH A 144 644 2054 HOH HOH . E 5 HOH A 145 645 2217 HOH HOH . E 5 HOH A 146 646 2014 HOH HOH . E 5 HOH A 147 647 2085 HOH HOH . E 5 HOH A 148 648 2196 HOH HOH . E 5 HOH A 149 649 2049 HOH HOH . E 5 HOH A 150 650 2126 HOH HOH . E 5 HOH A 151 651 2147 HOH HOH . E 5 HOH A 152 652 2042 HOH HOH . E 5 HOH A 153 653 2032 HOH HOH . E 5 HOH A 154 654 2088 HOH HOH . E 5 HOH A 155 655 2163 HOH HOH . E 5 HOH A 156 656 2232 HOH HOH . E 5 HOH A 157 657 2115 HOH HOH . E 5 HOH A 158 658 2030 HOH HOH . E 5 HOH A 159 659 2195 HOH HOH . E 5 HOH A 160 660 2204 HOH HOH . E 5 HOH A 161 661 2151 HOH HOH . E 5 HOH A 162 662 2190 HOH HOH . E 5 HOH A 163 663 2008 HOH HOH . E 5 HOH A 164 664 2231 HOH HOH . E 5 HOH A 165 665 2074 HOH HOH . E 5 HOH A 166 666 2182 HOH HOH . E 5 HOH A 167 667 2047 HOH HOH . E 5 HOH A 168 668 2123 HOH HOH . E 5 HOH A 169 669 2077 HOH HOH . E 5 HOH A 170 670 2022 HOH HOH . E 5 HOH A 171 671 2185 HOH HOH . E 5 HOH A 172 672 2183 HOH HOH . E 5 HOH A 173 673 2104 HOH HOH . E 5 HOH A 174 674 2228 HOH HOH . E 5 HOH A 175 675 2218 HOH HOH . E 5 HOH A 176 676 2098 HOH HOH . E 5 HOH A 177 677 2127 HOH HOH . E 5 HOH A 178 678 2072 HOH HOH . E 5 HOH A 179 679 2035 HOH HOH . E 5 HOH A 180 680 2084 HOH HOH . E 5 HOH A 181 681 2018 HOH HOH . E 5 HOH A 182 682 2052 HOH HOH . E 5 HOH A 183 683 2028 HOH HOH . E 5 HOH A 184 684 2108 HOH HOH . E 5 HOH A 185 685 2193 HOH HOH . E 5 HOH A 186 686 2188 HOH HOH . E 5 HOH A 187 687 2128 HOH HOH . E 5 HOH A 188 688 2202 HOH HOH . E 5 HOH A 189 689 2157 HOH HOH . E 5 HOH A 190 690 2048 HOH HOH . E 5 HOH A 191 691 2210 HOH HOH . E 5 HOH A 192 692 2137 HOH HOH . E 5 HOH A 193 693 2041 HOH HOH . E 5 HOH A 194 694 2133 HOH HOH . E 5 HOH A 195 695 2 HOH HOH . E 5 HOH A 196 696 2010 HOH HOH . E 5 HOH A 197 697 2091 HOH HOH . E 5 HOH A 198 698 2076 HOH HOH . E 5 HOH A 199 699 2029 HOH HOH . E 5 HOH A 200 700 2025 HOH HOH . E 5 HOH A 201 701 2005 HOH HOH . E 5 HOH A 202 702 2031 HOH HOH . E 5 HOH A 203 703 2118 HOH HOH . E 5 HOH A 204 704 2071 HOH HOH . E 5 HOH A 205 705 2146 HOH HOH . E 5 HOH A 206 706 2096 HOH HOH . E 5 HOH A 207 707 2100 HOH HOH . E 5 HOH A 208 708 2111 HOH HOH . E 5 HOH A 209 709 2132 HOH HOH . E 5 HOH A 210 710 2075 HOH HOH . E 5 HOH A 211 711 2174 HOH HOH . E 5 HOH A 212 712 2040 HOH HOH . E 5 HOH A 213 713 2103 HOH HOH . E 5 HOH A 214 714 2116 HOH HOH . E 5 HOH A 215 715 2027 HOH HOH . E 5 HOH A 216 716 2078 HOH HOH . E 5 HOH A 217 717 2060 HOH HOH . E 5 HOH A 218 718 2093 HOH HOH . E 5 HOH A 219 719 2197 HOH HOH . E 5 HOH A 220 720 2011 HOH HOH . E 5 HOH A 221 721 2055 HOH HOH . E 5 HOH A 222 722 2136 HOH HOH . E 5 HOH A 223 723 2198 HOH HOH . E 5 HOH A 224 724 2069 HOH HOH . E 5 HOH A 225 725 2089 HOH HOH . E 5 HOH A 226 726 2009 HOH HOH . E 5 HOH A 227 727 2125 HOH HOH . E 5 HOH A 228 728 2081 HOH HOH . E 5 HOH A 229 729 2082 HOH HOH . E 5 HOH A 230 730 2094 HOH HOH . E 5 HOH A 231 731 2139 HOH HOH . E 5 HOH A 232 732 2144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.512 _atom_site.Cartn_y 47.295 _atom_site.Cartn_z 5.579 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #