data_6QYP # _model_server_result.job_id XLe8Wy0QK1rrBHJXrYRxuA _model_server_result.datetime_utc '2024-12-01 01:14:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QYP # _exptl.entry_id 6QYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 567.099 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-[5-[3-chloranyl-2-methyl-5-(4-methylpiperazin-1-yl)-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QYP _cell.length_a 40.165 _cell.length_b 40.165 _cell.length_c 327.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 Cl N4 O4 S' _chem_comp.formula_weight 567.099 _chem_comp.id JL5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-[5-[3-chloranyl-2-methyl-5-(4-methylpiperazin-1-yl)-4-oxidanyl-phenyl]-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 JL5 doub 173 n y N3 C9 JL5 sing 174 n y S5 C9 JL5 sing 175 n y S5 C6 JL5 sing 176 n y C22 C10 JL5 sing 177 n n C2 N1 JL5 sing 178 n y C9 C8 JL5 doub 179 n y C6 C10 JL5 sing 180 n n C6 C7 JL5 doub 181 n y N1 C4 JL5 doub 182 n y C8 C7 JL5 sing 183 n y C8 C4 JL5 sing 184 n y C7 C23 JL5 sing 185 n n C4 O11 JL5 sing 186 n n O16 C14 JL5 doub 187 n n C14 O15 JL5 sing 188 n n C14 C12 JL5 sing 189 n n C23 C28 JL5 doub 190 n y C23 C24 JL5 sing 191 n y O11 C12 JL5 sing 192 n n C28 C26 JL5 sing 193 n y C12 C13 JL5 sing 194 n n C34 C35 JL5 sing 195 n n C34 N32 JL5 sing 196 n n C29 C24 JL5 sing 197 n n C35 N36 JL5 sing 198 n n C24 C27 JL5 doub 199 n y N36 C39 JL5 sing 200 n n N36 C37 JL5 sing 201 n n C26 N32 JL5 sing 202 n n C26 C25 JL5 doub 203 n y N32 C38 JL5 sing 204 n n C13 C17 JL5 sing 205 n n C27 C25 JL5 sing 206 n y C27 CL JL5 sing 207 n n C25 O30 JL5 sing 208 n n C38 C37 JL5 sing 209 n n C17 C33 JL5 doub 210 n y C17 C18 JL5 sing 211 n y C33 C20 JL5 sing 212 n y C18 C21 JL5 doub 213 n y C20 C19 JL5 doub 214 n y C21 C19 JL5 sing 215 n y C2 H1 JL5 sing 216 n n C12 H2 JL5 sing 217 n n C13 H3 JL5 sing 218 n n C13 H4 JL5 sing 219 n n C10 H5 JL5 sing 220 n n C10 H6 JL5 sing 221 n n C34 H7 JL5 sing 222 n n C34 H8 JL5 sing 223 n n C35 H9 JL5 sing 224 n n C35 H10 JL5 sing 225 n n C39 H12 JL5 sing 226 n n C39 H13 JL5 sing 227 n n C39 H14 JL5 sing 228 n n C37 H15 JL5 sing 229 n n C37 H16 JL5 sing 230 n n C38 H17 JL5 sing 231 n n C38 H18 JL5 sing 232 n n C28 H19 JL5 sing 233 n n O30 H20 JL5 sing 234 n n C29 H21 JL5 sing 235 n n C29 H22 JL5 sing 236 n n C29 H23 JL5 sing 237 n n C22 H24 JL5 sing 238 n n C22 H25 JL5 sing 239 n n C22 H26 JL5 sing 240 n n O15 H27 JL5 sing 241 n n C18 H28 JL5 sing 242 n n C21 H29 JL5 sing 243 n n C19 H30 JL5 sing 244 n n C20 H31 JL5 sing 245 n n C33 H32 JL5 sing 246 n n # _atom_sites.entry_id 6QYP _atom_sites.fract_transf_matrix[1][1] 0.024897 _atom_sites.fract_transf_matrix[1][2] 0.014374 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JL5 A 1 401 401 JL5 8DP . C 3 HOH A 1 501 3 HOH HOH . C 3 HOH A 2 502 31 HOH HOH . C 3 HOH A 3 503 7 HOH HOH . C 3 HOH A 4 504 13 HOH HOH . C 3 HOH A 5 505 4 HOH HOH . C 3 HOH A 6 506 30 HOH HOH . C 3 HOH A 7 507 36 HOH HOH . C 3 HOH A 8 508 22 HOH HOH . C 3 HOH A 9 509 14 HOH HOH . C 3 HOH A 10 510 34 HOH HOH . C 3 HOH A 11 511 2 HOH HOH . C 3 HOH A 12 512 6 HOH HOH . C 3 HOH A 13 513 1 HOH HOH . C 3 HOH A 14 514 9 HOH HOH . C 3 HOH A 15 515 25 HOH HOH . C 3 HOH A 16 516 11 HOH HOH . C 3 HOH A 17 517 10 HOH HOH . C 3 HOH A 18 518 12 HOH HOH . C 3 HOH A 19 519 33 HOH HOH . C 3 HOH A 20 520 19 HOH HOH . C 3 HOH A 21 521 8 HOH HOH . C 3 HOH A 22 522 27 HOH HOH . C 3 HOH A 23 523 35 HOH HOH . C 3 HOH A 24 524 21 HOH HOH . C 3 HOH A 25 525 32 HOH HOH . C 3 HOH A 26 526 29 HOH HOH . C 3 HOH A 27 527 5 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JL5 . . . B 2 4.288 0.583 -5.916 1 46.45 ? C4 JL5 401 A 1 HETATM 2 C C8 JL5 . . . B 2 5.072 1.565 -6.51 1 50.06 ? C8 JL5 401 A 1 HETATM 3 N N3 JL5 . . . B 2 3.738 1.402 -8.442 1 47.38 ? N3 JL5 401 A 1 HETATM 4 C C2 JL5 . . . B 2 2.994 0.477 -7.822 1 47.67 ? C2 JL5 401 A 1 HETATM 5 N N1 JL5 . . . B 2 3.27 0.051 -6.59 1 47.05 ? N1 JL5 401 A 1 HETATM 6 C C6 JL5 . . . B 2 6.69 3.153 -6.903 1 56.38 ? C6 JL5 401 A 1 HETATM 7 C C12 JL5 . . . B 2 3.676 -0.839 -4.116 1 50.07 ? C12 JL5 401 A 1 HETATM 8 C C13 JL5 . . . B 2 3.913 -0.91 -2.631 1 47.85 ? C13 JL5 401 A 1 HETATM 9 C C14 JL5 . . . B 2 3.963 -2.183 -4.807 1 49.45 ? C14 JL5 401 A 1 HETATM 10 C C7 JL5 . . . B 2 6.175 2.246 -6.003 1 50.86 ? C7 JL5 401 A 1 HETATM 11 C C9 JL5 . . . B 2 4.772 1.956 -7.801 1 46.2 ? C9 JL5 401 A 1 HETATM 12 C C10 JL5 . . . B 2 7.902 4.047 -6.636 1 58.53 ? C10 JL5 401 A 1 HETATM 13 C C34 JL5 . . . B 2 9.862 -0.853 -4.106 1 67.05 ? C34 JL5 401 A 1 HETATM 14 C C35 JL5 . . . B 2 10.627 -2.144 -3.703 1 68.69 ? C35 JL5 401 A 1 HETATM 15 N N36 JL5 . . . B 2 9.682 -3.137 -3.206 1 78.15 ? N36 JL5 401 A 1 HETATM 16 C C39 JL5 . . . B 2 10.353 -4.427 -3.01 1 77.2 ? C39 JL5 401 A 1 HETATM 17 C C37 JL5 . . . B 2 9.164 -2.668 -1.932 1 72.29 ? C37 JL5 401 A 1 HETATM 18 C C38 JL5 . . . B 2 8.191 -1.538 -2.174 1 62.85 ? C38 JL5 401 A 1 HETATM 19 N N32 JL5 . . . B 2 8.793 -0.487 -3.074 1 68.31 ? N32 JL5 401 A 1 HETATM 20 C C26 JL5 . . . B 2 8.135 0.742 -3.195 1 64.93 ? C26 JL5 401 A 1 HETATM 21 C C28 JL5 . . . B 2 7.483 0.955 -4.408 1 59.66 ? C28 JL5 401 A 1 HETATM 22 C C25 JL5 . . . B 2 8.04 1.711 -2.206 1 60.51 ? C25 JL5 401 A 1 HETATM 23 O O30 JL5 . . . B 2 8.598 1.606 -1.008 1 63.33 ? O30 JL5 401 A 1 HETATM 24 C C27 JL5 . . . B 2 7.33 2.862 -2.452 1 63.25 ? C27 JL5 401 A 1 HETATM 25 CL CL JL5 . . . B 2 7.285 4.027 -1.18 1 57.68 ? CL JL5 401 A 1 HETATM 26 C C24 JL5 . . . B 2 6.705 3.082 -3.682 1 50.16 ? C24 JL5 401 A 1 HETATM 27 C C29 JL5 . . . B 2 5.947 4.376 -3.93 1 48.56 ? C29 JL5 401 A 1 HETATM 28 C C23 JL5 . . . B 2 6.79 2.1 -4.669 1 50.7 ? C23 JL5 401 A 1 HETATM 29 C C22 JL5 . . . B 2 8.454 4.51 -7.972 1 62.64 ? C22 JL5 401 A 1 HETATM 30 S S5 JL5 . . . B 2 5.84 3.153 -8.371 1 50.95 ? S5 JL5 401 A 1 HETATM 31 O O11 JL5 . . . B 2 4.524 0.209 -4.642 1 50.06 ? O11 JL5 401 A 1 HETATM 32 O O16 JL5 . . . B 2 4.997 -2.267 -5.428 1 52.05 ? O16 JL5 401 A 1 HETATM 33 O O15 JL5 . . . B 2 3.167 -3.124 -4.787 1 51.65 ? O15 JL5 401 A 1 HETATM 34 C C17 JL5 . . . B 2 3.387 0.349 -1.916 1 49.97 ? C17 JL5 401 A 1 HETATM 35 C C18 JL5 . . . B 2 4.274 1.319 -1.517 1 48.25 ? C18 JL5 401 A 1 HETATM 36 C C21 JL5 . . . B 2 3.796 2.432 -0.851 1 50.16 ? C21 JL5 401 A 1 HETATM 37 C C19 JL5 . . . B 2 2.445 2.621 -0.621 1 52.29 ? C19 JL5 401 A 1 HETATM 38 C C20 JL5 . . . B 2 1.535 1.661 -1.038 1 54.54 ? C20 JL5 401 A 1 HETATM 39 C C33 JL5 . . . B 2 2.024 0.523 -1.667 1 57 ? C33 JL5 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 816 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 39 #