data_6QYX # _model_server_result.job_id 5InxRf1YM9Df2MkSAeKM1Q _model_server_result.datetime_utc '2024-11-14 05:22:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QYX # _exptl.entry_id 6QYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QYX _cell.length_a 68.86 _cell.length_b 74.5 _cell.length_c 75.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6QYX _atom_sites.fract_transf_matrix[1][1] 0.014522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 401 1 BOG BOG . C 3 EPE A 1 402 1 EPE EPE . D 4 HOH A 1 501 180 HOH HOH . D 4 HOH A 2 502 99 HOH HOH . D 4 HOH A 3 503 169 HOH HOH . D 4 HOH A 4 504 148 HOH HOH . D 4 HOH A 5 505 42 HOH HOH . D 4 HOH A 6 506 32 HOH HOH . D 4 HOH A 7 507 6 HOH HOH . D 4 HOH A 8 508 60 HOH HOH . D 4 HOH A 9 509 149 HOH HOH . D 4 HOH A 10 510 177 HOH HOH . D 4 HOH A 11 511 200 HOH HOH . D 4 HOH A 12 512 72 HOH HOH . D 4 HOH A 13 513 18 HOH HOH . D 4 HOH A 14 514 116 HOH HOH . D 4 HOH A 15 515 123 HOH HOH . D 4 HOH A 16 516 22 HOH HOH . D 4 HOH A 17 517 36 HOH HOH . D 4 HOH A 18 518 113 HOH HOH . D 4 HOH A 19 519 48 HOH HOH . D 4 HOH A 20 520 167 HOH HOH . D 4 HOH A 21 521 13 HOH HOH . D 4 HOH A 22 522 73 HOH HOH . D 4 HOH A 23 523 34 HOH HOH . D 4 HOH A 24 524 66 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 164 HOH HOH . D 4 HOH A 27 527 150 HOH HOH . D 4 HOH A 28 528 175 HOH HOH . D 4 HOH A 29 529 90 HOH HOH . D 4 HOH A 30 530 198 HOH HOH . D 4 HOH A 31 531 11 HOH HOH . D 4 HOH A 32 532 186 HOH HOH . D 4 HOH A 33 533 129 HOH HOH . D 4 HOH A 34 534 46 HOH HOH . D 4 HOH A 35 535 184 HOH HOH . D 4 HOH A 36 536 155 HOH HOH . D 4 HOH A 37 537 10 HOH HOH . D 4 HOH A 38 538 101 HOH HOH . D 4 HOH A 39 539 14 HOH HOH . D 4 HOH A 40 540 125 HOH HOH . D 4 HOH A 41 541 54 HOH HOH . D 4 HOH A 42 542 199 HOH HOH . D 4 HOH A 43 543 171 HOH HOH . D 4 HOH A 44 544 44 HOH HOH . D 4 HOH A 45 545 82 HOH HOH . D 4 HOH A 46 546 68 HOH HOH . D 4 HOH A 47 547 7 HOH HOH . D 4 HOH A 48 548 158 HOH HOH . D 4 HOH A 49 549 70 HOH HOH . D 4 HOH A 50 550 139 HOH HOH . D 4 HOH A 51 551 161 HOH HOH . D 4 HOH A 52 552 146 HOH HOH . D 4 HOH A 53 553 31 HOH HOH . D 4 HOH A 54 554 86 HOH HOH . D 4 HOH A 55 555 166 HOH HOH . D 4 HOH A 56 556 153 HOH HOH . D 4 HOH A 57 557 29 HOH HOH . D 4 HOH A 58 558 127 HOH HOH . D 4 HOH A 59 559 181 HOH HOH . D 4 HOH A 60 560 81 HOH HOH . D 4 HOH A 61 561 117 HOH HOH . D 4 HOH A 62 562 8 HOH HOH . D 4 HOH A 63 563 59 HOH HOH . D 4 HOH A 64 564 43 HOH HOH . D 4 HOH A 65 565 120 HOH HOH . D 4 HOH A 66 566 188 HOH HOH . D 4 HOH A 67 567 145 HOH HOH . D 4 HOH A 68 568 19 HOH HOH . D 4 HOH A 69 569 174 HOH HOH . D 4 HOH A 70 570 121 HOH HOH . D 4 HOH A 71 571 62 HOH HOH . D 4 HOH A 72 572 157 HOH HOH . D 4 HOH A 73 573 79 HOH HOH . D 4 HOH A 74 574 168 HOH HOH . D 4 HOH A 75 575 88 HOH HOH . D 4 HOH A 76 576 154 HOH HOH . D 4 HOH A 77 577 23 HOH HOH . D 4 HOH A 78 578 143 HOH HOH . D 4 HOH A 79 579 134 HOH HOH . D 4 HOH A 80 580 131 HOH HOH . D 4 HOH A 81 581 132 HOH HOH . D 4 HOH A 82 582 97 HOH HOH . D 4 HOH A 83 583 5 HOH HOH . D 4 HOH A 84 584 135 HOH HOH . D 4 HOH A 85 585 39 HOH HOH . D 4 HOH A 86 586 172 HOH HOH . D 4 HOH A 87 587 67 HOH HOH . D 4 HOH A 88 588 152 HOH HOH . D 4 HOH A 89 589 65 HOH HOH . D 4 HOH A 90 590 122 HOH HOH . D 4 HOH A 91 591 16 HOH HOH . D 4 HOH A 92 592 64 HOH HOH . D 4 HOH A 93 593 38 HOH HOH . D 4 HOH A 94 594 151 HOH HOH . D 4 HOH A 95 595 55 HOH HOH . D 4 HOH A 96 596 176 HOH HOH . D 4 HOH A 97 597 147 HOH HOH . D 4 HOH A 98 598 58 HOH HOH . D 4 HOH A 99 599 1 HOH HOH . D 4 HOH A 100 600 84 HOH HOH . D 4 HOH A 101 601 128 HOH HOH . D 4 HOH A 102 602 141 HOH HOH . D 4 HOH A 103 603 33 HOH HOH . D 4 HOH A 104 604 4 HOH HOH . D 4 HOH A 105 605 92 HOH HOH . D 4 HOH A 106 606 190 HOH HOH . D 4 HOH A 107 607 24 HOH HOH . D 4 HOH A 108 608 78 HOH HOH . D 4 HOH A 109 609 138 HOH HOH . D 4 HOH A 110 610 126 HOH HOH . D 4 HOH A 111 611 183 HOH HOH . D 4 HOH A 112 612 28 HOH HOH . D 4 HOH A 113 613 9 HOH HOH . D 4 HOH A 114 614 195 HOH HOH . D 4 HOH A 115 615 144 HOH HOH . D 4 HOH A 116 616 114 HOH HOH . D 4 HOH A 117 617 71 HOH HOH . D 4 HOH A 118 618 83 HOH HOH . D 4 HOH A 119 619 162 HOH HOH . D 4 HOH A 120 620 76 HOH HOH . D 4 HOH A 121 621 163 HOH HOH . D 4 HOH A 122 622 47 HOH HOH . D 4 HOH A 123 623 115 HOH HOH . D 4 HOH A 124 624 192 HOH HOH . D 4 HOH A 125 625 179 HOH HOH . D 4 HOH A 126 626 89 HOH HOH . D 4 HOH A 127 627 119 HOH HOH . D 4 HOH A 128 628 156 HOH HOH . D 4 HOH A 129 629 15 HOH HOH . D 4 HOH A 130 630 159 HOH HOH . D 4 HOH A 131 631 40 HOH HOH . D 4 HOH A 132 632 94 HOH HOH . D 4 HOH A 133 633 136 HOH HOH . D 4 HOH A 134 634 170 HOH HOH . D 4 HOH A 135 635 130 HOH HOH . D 4 HOH A 136 636 165 HOH HOH . D 4 HOH A 137 637 87 HOH HOH . D 4 HOH A 138 638 41 HOH HOH . D 4 HOH A 139 639 49 HOH HOH . D 4 HOH A 140 640 74 HOH HOH . D 4 HOH A 141 641 124 HOH HOH . D 4 HOH A 142 642 187 HOH HOH . D 4 HOH A 143 643 77 HOH HOH . D 4 HOH A 144 644 30 HOH HOH . D 4 HOH A 145 645 61 HOH HOH . D 4 HOH A 146 646 91 HOH HOH . D 4 HOH A 147 647 51 HOH HOH . D 4 HOH A 148 648 98 HOH HOH . D 4 HOH A 149 649 196 HOH HOH . D 4 HOH A 150 650 189 HOH HOH . D 4 HOH A 151 651 93 HOH HOH . D 4 HOH A 152 652 133 HOH HOH . D 4 HOH A 153 653 118 HOH HOH . D 4 HOH A 154 654 137 HOH HOH . D 4 HOH A 155 655 160 HOH HOH . D 4 HOH A 156 656 142 HOH HOH . D 4 HOH A 157 657 194 HOH HOH . D 4 HOH A 158 658 26 HOH HOH . D 4 HOH A 159 659 85 HOH HOH . D 4 HOH A 160 660 197 HOH HOH . D 4 HOH A 161 661 102 HOH HOH . D 4 HOH A 162 662 27 HOH HOH . D 4 HOH A 163 663 17 HOH HOH . D 4 HOH A 164 664 37 HOH HOH . D 4 HOH A 165 665 96 HOH HOH . D 4 HOH A 166 666 35 HOH HOH . D 4 HOH A 167 667 3 HOH HOH . D 4 HOH A 168 668 178 HOH HOH . D 4 HOH A 169 669 21 HOH HOH . D 4 HOH A 170 670 45 HOH HOH . D 4 HOH A 171 671 53 HOH HOH . D 4 HOH A 172 672 95 HOH HOH . D 4 HOH A 173 673 2 HOH HOH . D 4 HOH A 174 674 173 HOH HOH . D 4 HOH A 175 675 20 HOH HOH . D 4 HOH A 176 676 52 HOH HOH . D 4 HOH A 177 677 69 HOH HOH . D 4 HOH A 178 678 25 HOH HOH . D 4 HOH A 179 679 56 HOH HOH . D 4 HOH A 180 680 105 HOH HOH . D 4 HOH A 181 681 191 HOH HOH . D 4 HOH A 182 682 104 HOH HOH . D 4 HOH A 183 683 185 HOH HOH . D 4 HOH A 184 684 107 HOH HOH . D 4 HOH A 185 685 140 HOH HOH . D 4 HOH A 186 686 75 HOH HOH . D 4 HOH A 187 687 57 HOH HOH . D 4 HOH A 188 688 203 HOH HOH . D 4 HOH A 189 689 106 HOH HOH . D 4 HOH A 190 690 182 HOH HOH . D 4 HOH A 191 691 110 HOH HOH . D 4 HOH A 192 692 193 HOH HOH . D 4 HOH A 193 693 109 HOH HOH . D 4 HOH A 194 694 111 HOH HOH . D 4 HOH A 195 695 80 HOH HOH . D 4 HOH A 196 696 63 HOH HOH . D 4 HOH A 197 697 103 HOH HOH . D 4 HOH A 198 698 100 HOH HOH . D 4 HOH A 199 699 112 HOH HOH . D 4 HOH A 200 700 108 HOH HOH . D 4 HOH A 201 701 202 HOH HOH . D 4 HOH A 202 702 50 HOH HOH . D 4 HOH A 203 703 204 HOH HOH . D 4 HOH A 204 704 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 23.258 12.322 -29.193 1 37.12 ? C1 BOG 401 A 1 HETATM 2 O O1 BOG . . . B 2 23.572 11.458 -28.152 1 32.85 ? O1 BOG 401 A 1 HETATM 3 C C2 BOG . . . B 2 24.092 11.941 -30.399 1 35.08 ? C2 BOG 401 A 1 HETATM 4 O O2 BOG . . . B 2 25.471 12.136 -30.081 1 31.89 ? O2 BOG 401 A 1 HETATM 5 C C3 BOG . . . B 2 23.625 12.78 -31.586 1 34.93 ? C3 BOG 401 A 1 HETATM 6 O O3 BOG . . . B 2 24.296 12.434 -32.793 1 33.73 ? O3 BOG 401 A 1 HETATM 7 C C4 BOG . . . B 2 22.135 12.559 -31.737 1 38.16 ? C4 BOG 401 A 1 HETATM 8 O O4 BOG . . . B 2 21.608 13.357 -32.783 1 41.04 ? O4 BOG 401 A 1 HETATM 9 C C5 BOG . . . B 2 21.419 12.922 -30.442 1 41.89 ? C5 BOG 401 A 1 HETATM 10 O O5 BOG . . . B 2 21.884 12.121 -29.405 1 31.85 ? O5 BOG 401 A 1 HETATM 11 C C6 BOG . . . B 2 19.907 12.818 -30.454 1 41.13 ? C6 BOG 401 A 1 HETATM 12 O O6 BOG . . . B 2 19.469 11.515 -30.207 1 59.72 ? O6 BOG 401 A 1 HETATM 13 C C1' BOG . . . B 2 24.39 12.09 -27.239 1 43.77 ? C1' BOG 401 A 1 HETATM 14 C C2' BOG . . . B 2 23.475 12.572 -26.166 1 45.33 ? C2' BOG 401 A 1 HETATM 15 C C3' BOG . . . B 2 24.505 13.13 -25.235 1 47.6 ? C3' BOG 401 A 1 HETATM 16 C C4' BOG . . . B 2 23.858 13.563 -23.961 1 40.82 ? C4' BOG 401 A 1 HETATM 17 C C5' BOG . . . B 2 24.923 14.464 -23.371 1 36.99 ? C5' BOG 401 A 1 HETATM 18 C C6' BOG . . . B 2 24.597 14.673 -21.919 1 38.94 ? C6' BOG 401 A 1 HETATM 19 C C7' BOG . . . B 2 25.783 15.369 -21.287 1 37.07 ? C7' BOG 401 A 1 HETATM 20 C C8' BOG . . . B 2 25.464 15.769 -19.867 1 42.95 ? C8' BOG 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #