data_6QZ8 # _model_server_result.job_id NAhrZfHSznpMPcIXkGcn-w _model_server_result.datetime_utc '2024-11-13 11:06:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QZ8 # _exptl.entry_id 6QZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.953 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-[5-(3-chloranyl-2-methyl-4-oxidanyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QZ8 _cell.length_a 39.47 _cell.length_b 39.47 _cell.length_c 326.644 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H21 Cl N2 O4 S' _chem_comp.formula_weight 468.953 _chem_comp.id JL8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-[5-(3-chloranyl-2-methyl-4-oxidanyl-phenyl)-6-ethyl-thieno[2,3-d]pyrimidin-4-yl]oxy-3-phenyl-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C20 JL8 doub 173 n y C23 C17 JL8 sing 174 n y C20 C19 JL8 sing 175 n y O31 C26 JL8 sing 176 n n C13 C17 JL8 sing 177 n n C13 C12 JL8 sing 178 n n C17 C18 JL8 doub 179 n y C27 C26 JL8 doub 180 n y C27 C29 JL8 sing 181 n y O16 C14 JL8 doub 182 n n O15 C14 JL8 sing 183 n n C14 C12 JL8 sing 184 n n C26 C28 JL8 sing 185 n y C19 C21 JL8 doub 186 n y C12 O11 JL8 sing 187 n n C29 C24 JL8 doub 188 n y C18 C21 JL8 sing 189 n y O11 C4 JL8 sing 190 n n C28 CL JL8 sing 191 n n C28 C25 JL8 doub 192 n y C24 C25 JL8 sing 193 n y C24 C7 JL8 sing 194 n n C4 N1 JL8 doub 195 n y C4 C8 JL8 sing 196 n y C25 C30 JL8 sing 197 n n N1 C2 JL8 sing 198 n y C7 C8 JL8 sing 199 n y C7 C6 JL8 doub 200 n y C8 C9 JL8 doub 201 n y C2 N3 JL8 doub 202 n y C6 C10 JL8 sing 203 n n C6 S5 JL8 sing 204 n y C10 C22 JL8 sing 205 n n C9 N3 JL8 sing 206 n y C9 S5 JL8 sing 207 n y C10 H1 JL8 sing 208 n n C10 H2 JL8 sing 209 n n C13 H3 JL8 sing 210 n n C13 H4 JL8 sing 211 n n C21 H5 JL8 sing 212 n n C2 H6 JL8 sing 213 n n C18 H7 JL8 sing 214 n n C23 H8 JL8 sing 215 n n C27 H9 JL8 sing 216 n n C29 H10 JL8 sing 217 n n C30 H11 JL8 sing 218 n n C30 H12 JL8 sing 219 n n C30 H13 JL8 sing 220 n n O31 H14 JL8 sing 221 n n C22 H15 JL8 sing 222 n n C22 H16 JL8 sing 223 n n C22 H17 JL8 sing 224 n n C12 H18 JL8 sing 225 n n O15 H19 JL8 sing 226 n n C19 H20 JL8 sing 227 n n C20 H21 JL8 sing 228 n n # _atom_sites.entry_id 6QZ8 _atom_sites.fract_transf_matrix[1][1] 0.025336 _atom_sites.fract_transf_matrix[1][2] 0.014628 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JL8 A 1 401 401 JL8 8BS . C 3 HOH A 1 501 30 HOH HOH . C 3 HOH A 2 502 32 HOH HOH . C 3 HOH A 3 503 41 HOH HOH . C 3 HOH A 4 504 8 HOH HOH . C 3 HOH A 5 505 28 HOH HOH . C 3 HOH A 6 506 39 HOH HOH . C 3 HOH A 7 507 23 HOH HOH . C 3 HOH A 8 508 2 HOH HOH . C 3 HOH A 9 509 16 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 13 HOH HOH . C 3 HOH A 13 513 5 HOH HOH . C 3 HOH A 14 514 29 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 36 HOH HOH . C 3 HOH A 17 517 7 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 4 HOH HOH . C 3 HOH A 21 521 24 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 1 HOH HOH . C 3 HOH A 24 524 6 HOH HOH . C 3 HOH A 25 525 33 HOH HOH . C 3 HOH A 26 526 3 HOH HOH . C 3 HOH A 27 527 9 HOH HOH . C 3 HOH A 28 528 31 HOH HOH . C 3 HOH A 29 529 11 HOH HOH . C 3 HOH A 30 530 12 HOH HOH . C 3 HOH A 31 531 21 HOH HOH . C 3 HOH A 32 532 42 HOH HOH . C 3 HOH A 33 533 26 HOH HOH . C 3 HOH A 34 534 27 HOH HOH . C 3 HOH A 35 535 34 HOH HOH . C 3 HOH A 36 536 25 HOH HOH . C 3 HOH A 37 537 40 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 22 HOH HOH . C 3 HOH A 40 540 35 HOH HOH . C 3 HOH A 41 541 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 JL8 . . . B 2 5.886 2.913 -6.856 1 31.77 ? C6 JL8 401 A 1 HETATM 2 C C8 JL8 . . . B 2 4.193 1.379 -6.433 1 29.38 ? C8 JL8 401 A 1 HETATM 3 C C10 JL8 . . . B 2 7.109 3.792 -6.542 1 35.61 ? C10 JL8 401 A 1 HETATM 4 C C13 JL8 . . . B 2 2.821 -0.86 -2.548 1 26.29 ? C13 JL8 401 A 1 HETATM 5 C C17 JL8 . . . B 2 2.385 0.392 -1.868 1 26.66 ? C17 JL8 401 A 1 HETATM 6 C C21 JL8 . . . B 2 0.654 1.737 -1.008 1 28.79 ? C21 JL8 401 A 1 HETATM 7 C C24 JL8 . . . B 2 5.88 2.026 -4.556 1 30.45 ? C24 JL8 401 A 1 HETATM 8 C C28 JL8 . . . B 2 6.372 3.052 -2.425 1 31.62 ? C28 JL8 401 A 1 HETATM 9 C C2 JL8 . . . B 2 2.098 0.303 -7.76 1 30.92 ? C2 JL8 401 A 1 HETATM 10 C C9 JL8 . . . B 2 3.934 1.72 -7.745 1 32.66 ? C9 JL8 401 A 1 HETATM 11 C C18 JL8 . . . B 2 1.045 0.563 -1.616 1 27.36 ? C18 JL8 401 A 1 HETATM 12 C C23 JL8 . . . B 2 3.341 1.329 -1.483 1 27.2 ? C23 JL8 401 A 1 HETATM 13 C C27 JL8 . . . B 2 7.167 0.788 -2.918 1 30.61 ? C27 JL8 401 A 1 HETATM 14 C C29 JL8 . . . B 2 6.586 0.878 -4.179 1 32.91 ? C29 JL8 401 A 1 HETATM 15 C C30 JL8 . . . B 2 5.05 4.391 -4.018 1 34.69 ? C30 JL8 401 A 1 HETATM 16 C C25 JL8 . . . B 2 5.781 3.11 -3.663 1 30.91 ? C25 JL8 401 A 1 HETATM 17 CL CL JL8 . . . B 2 6.267 4.358 -1.288 1 36.27 ? CL JL8 401 A 1 HETATM 18 C C26 JL8 . . . B 2 7.056 1.885 -2.054 1 37.22 ? C26 JL8 401 A 1 HETATM 19 O O31 JL8 . . . B 2 7.617 1.84 -0.823 1 35.79 ? O31 JL8 401 A 1 HETATM 20 C C7 JL8 . . . B 2 5.295 2.081 -5.914 1 28.63 ? C7 JL8 401 A 1 HETATM 21 C C22 JL8 . . . B 2 7.802 4.121 -7.836 1 40.61 ? C22 JL8 401 A 1 HETATM 22 S S5 JL8 . . . B 2 5.126 2.871 -8.36 1 32.7 ? S5 JL8 401 A 1 HETATM 23 N N3 JL8 . . . B 2 2.907 1.182 -8.399 1 26.24 ? N3 JL8 401 A 1 HETATM 24 N N1 JL8 . . . B 2 2.325 -0.076 -6.465 1 26.14 ? N1 JL8 401 A 1 HETATM 25 C C4 JL8 . . . B 2 3.337 0.477 -5.812 1 26.98 ? C4 JL8 401 A 1 HETATM 26 O O11 JL8 . . . B 2 3.552 0.184 -4.521 1 27.65 ? O11 JL8 401 A 1 HETATM 27 C C12 JL8 . . . B 2 2.671 -0.854 -4.013 1 28.7 ? C12 JL8 401 A 1 HETATM 28 C C14 JL8 . . . B 2 3.005 -2.243 -4.626 1 30.55 ? C14 JL8 401 A 1 HETATM 29 O O16 JL8 . . . B 2 2.136 -3.116 -4.614 1 32.61 ? O16 JL8 401 A 1 HETATM 30 O O15 JL8 . . . B 2 4.11 -2.425 -5.136 1 30.38 ? O15 JL8 401 A 1 HETATM 31 C C19 JL8 . . . B 2 1.583 2.662 -0.583 1 26.44 ? C19 JL8 401 A 1 HETATM 32 C C20 JL8 . . . B 2 2.921 2.495 -0.865 1 28.07 ? C20 JL8 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #