data_6QZD
#
_model_server_result.job_id            TTio7mtSWOLTL807Nx0lvg 
_model_server_result.datetime_utc      '2024-11-17 01:36:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qzd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":201}' 
#
_entry.id    6QZD 
#
_exptl.entry_id    6QZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.5 
_cell.angle_gamma         90 
_cell.entry_id            6QZD 
_cell.length_a            67.42 
_cell.length_b            76.73 
_cell.length_c            90.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,Q,R 1 1 
D,E,F,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 K N N 
? 5 L N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 105 AAA CYS 107 1_555 A SG CYS 161 AAA CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 16 BBB CYS 15 1_555 B SG CYS 80 BBB CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
disulf ? disulf3 B SG CYS 118 BBB CYS 117 1_555 B SG CYS 174 BBB CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf4 D SG CYS 105 DDD CYS 107 1_555 D SG CYS 161 DDD CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf5 E SG CYS 16 EEE CYS 15 1_555 E SG CYS 80 EEE CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
disulf ? disulf6 E SG CYS 118 EEE CYS 117 1_555 E SG CYS 174 EEE CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6QZD 
_atom_sites.fract_transf_matrix[1][1]    0.014832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000907 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 PEG AAA 1 201 1 PEG PEG . 
H 5 EDO AAA 1 202 3 EDO EDO . 
I 5 EDO AAA 1 203 5 EDO EDO . 
J 6 GOL AAA 1 204 1 GOL GOL . 
K 5 EDO BBB 1 201 1 EDO EDO . 
L 5 EDO BBB 1 202 4 EDO EDO . 
M 7 SO4 DDD 1 201 1 SO4 SO4 . 
N 4 PEG DDD 1 202 2 PEG PEG . 
O 5 EDO DDD 1 203 6 EDO EDO . 
P 5 EDO EEE 1 201 2 EDO EDO . 
Q 8 HOH AAA 1 301 22 HOH HOH . 
Q 8 HOH AAA 2 302 44 HOH HOH . 
Q 8 HOH AAA 3 303 14 HOH HOH . 
Q 8 HOH AAA 4 304 75 HOH HOH . 
Q 8 HOH AAA 5 305 11 HOH HOH . 
Q 8 HOH AAA 6 306 9 HOH HOH . 
Q 8 HOH AAA 7 307 60 HOH HOH . 
Q 8 HOH AAA 8 308 80 HOH HOH . 
Q 8 HOH AAA 9 309 40 HOH HOH . 
Q 8 HOH AAA 10 310 6 HOH HOH . 
Q 8 HOH AAA 11 311 25 HOH HOH . 
Q 8 HOH AAA 12 312 16 HOH HOH . 
R 8 HOH BBB 1 301 57 HOH HOH . 
R 8 HOH BBB 2 302 46 HOH HOH . 
R 8 HOH BBB 3 303 41 HOH HOH . 
R 8 HOH BBB 4 304 10 HOH HOH . 
R 8 HOH BBB 5 305 53 HOH HOH . 
R 8 HOH BBB 6 306 88 HOH HOH . 
R 8 HOH BBB 7 307 64 HOH HOH . 
R 8 HOH BBB 8 308 3 HOH HOH . 
R 8 HOH BBB 9 309 55 HOH HOH . 
R 8 HOH BBB 10 310 63 HOH HOH . 
R 8 HOH BBB 11 311 2 HOH HOH . 
R 8 HOH BBB 12 312 28 HOH HOH . 
S 8 HOH DDD 1 301 27 HOH HOH . 
S 8 HOH DDD 2 302 31 HOH HOH . 
S 8 HOH DDD 3 303 18 HOH HOH . 
S 8 HOH DDD 4 304 19 HOH HOH . 
S 8 HOH DDD 5 305 70 HOH HOH . 
S 8 HOH DDD 6 306 23 HOH HOH . 
S 8 HOH DDD 7 307 24 HOH HOH . 
S 8 HOH DDD 8 308 13 HOH HOH . 
S 8 HOH DDD 9 309 38 HOH HOH . 
S 8 HOH DDD 10 310 81 HOH HOH . 
S 8 HOH DDD 11 311 66 HOH HOH . 
S 8 HOH DDD 12 312 43 HOH HOH . 
S 8 HOH DDD 13 313 30 HOH HOH . 
S 8 HOH DDD 14 314 32 HOH HOH . 
T 8 HOH EEE 1 301 17 HOH HOH . 
T 8 HOH EEE 2 302 78 HOH HOH . 
T 8 HOH EEE 3 303 73 HOH HOH . 
T 8 HOH EEE 4 304 29 HOH HOH . 
T 8 HOH EEE 5 305 82 HOH HOH . 
T 8 HOH EEE 6 306 79 HOH HOH . 
T 8 HOH EEE 7 307 77 HOH HOH . 
T 8 HOH EEE 8 308 67 HOH HOH . 
T 8 HOH EEE 9 309 71 HOH HOH . 
T 8 HOH EEE 10 310 12 HOH HOH . 
T 8 HOH EEE 11 311 85 HOH HOH . 
T 8 HOH EEE 12 312 35 HOH HOH . 
T 8 HOH EEE 13 313 33 HOH HOH . 
T 8 HOH EEE 14 314 59 HOH HOH . 
T 8 HOH EEE 15 315 58 HOH HOH . 
T 8 HOH EEE 16 316 42 HOH HOH . 
T 8 HOH EEE 17 317 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . P 5 4.507 -2.286 61.289 1 47.68 ? C1 EDO 201 EEE 1 
HETATM 2 O O1 EDO . . . P 5 4.81 -1.376 62.327 1 48.72 ? O1 EDO 201 EEE 1 
HETATM 3 C C2 EDO . . . P 5 4.785 -1.696 59.965 1 45.44 ? C2 EDO 201 EEE 1 
HETATM 4 O O2 EDO . . . P 5 5.111 -0.331 60.1 1 43.46 ? O2 EDO 201 EEE 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#