data_6R0F # _model_server_result.job_id qLQ1byyrVe81ZaYpGwfMTQ _model_server_result.datetime_utc '2024-12-23 08:43:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6R0F # _exptl.entry_id 6R0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R0F _cell.length_a 46.729 _cell.length_b 71.566 _cell.length_c 98.693 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id AR6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Adenosine-5-Diphosphoribose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 AR6 doub 13 n y N1 C6 AR6 sing 14 n y C2 N3 AR6 sing 15 n y N3 C4 AR6 doub 16 n y C4 C5 AR6 sing 17 n y C4 N9 AR6 sing 18 n y C5 C6 AR6 doub 19 n y C5 N7 AR6 sing 20 n y C6 N6 AR6 sing 21 n n N7 C8 AR6 doub 22 n y C8 N9 AR6 sing 23 n y N9 C1' AR6 sing 24 n n PA O1A AR6 sing 25 n n PA O2A AR6 doub 26 n n PA O3A AR6 sing 27 n n PA O5' AR6 sing 28 n n PB O1B AR6 sing 29 n n PB O2B AR6 doub 30 n n PB O3A AR6 sing 31 n n PB O5D AR6 sing 32 n n C1' C2' AR6 sing 33 n n C1' O4' AR6 sing 34 n n C1D O1D AR6 sing 35 n n C1D C2D AR6 sing 36 n n C1D O4D AR6 sing 37 n n C2' O2' AR6 sing 38 n n C2' C3' AR6 sing 39 n n C2D O2D AR6 sing 40 n n C2D C3D AR6 sing 41 n n C3' O3' AR6 sing 42 n n C3' C4' AR6 sing 43 n n C3D O3D AR6 sing 44 n n C3D C4D AR6 sing 45 n n C4' O4' AR6 sing 46 n n C4' C5' AR6 sing 47 n n C4D O4D AR6 sing 48 n n C4D C5D AR6 sing 49 n n C5' O5' AR6 sing 50 n n C5D O5D AR6 sing 51 n n C2 H2 AR6 sing 52 n n N6 HN6 AR6 sing 53 n n N6 HN6A AR6 sing 54 n n C8 H8 AR6 sing 55 n n C1' H1' AR6 sing 56 n n C1D H1D AR6 sing 57 n n C2' H2' AR6 sing 58 n n O2' HO2' AR6 sing 59 n n C2D H2D AR6 sing 60 n n O2D HO2D AR6 sing 61 n n C3' H3' AR6 sing 62 n n O3' HO3' AR6 sing 63 n n C3D H3D AR6 sing 64 n n O3D HO3D AR6 sing 65 n n C4' H4' AR6 sing 66 n n C4D H4D AR6 sing 67 n n C5' H5' AR6 sing 68 n n C5' "H5'A" AR6 sing 69 n n C5D H5D AR6 sing 70 n n C5D H5DA AR6 sing 71 n n O1A H1A AR6 sing 72 n n O1B H1B AR6 sing 73 n n O1D HD1 AR6 sing 74 n n # _atom_sites.entry_id 6R0F _atom_sites.fract_transf_matrix[1][1] 0.0214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR6 A 1 201 477 AR6 APR . D 2 AR6 B 1 201 478 AR6 APR . E 3 HOH A 1 301 165 HOH HOH . E 3 HOH A 2 302 183 HOH HOH . E 3 HOH A 3 303 54 HOH HOH . E 3 HOH A 4 304 100 HOH HOH . E 3 HOH A 5 305 51 HOH HOH . E 3 HOH A 6 306 80 HOH HOH . E 3 HOH A 7 307 3 HOH HOH . E 3 HOH A 8 308 113 HOH HOH . E 3 HOH A 9 309 1 HOH HOH . E 3 HOH A 10 310 121 HOH HOH . E 3 HOH A 11 311 36 HOH HOH . E 3 HOH A 12 312 37 HOH HOH . E 3 HOH A 13 313 133 HOH HOH . E 3 HOH A 14 314 101 HOH HOH . E 3 HOH A 15 315 182 HOH HOH . E 3 HOH A 16 316 98 HOH HOH . E 3 HOH A 17 317 11 HOH HOH . E 3 HOH A 18 318 163 HOH HOH . E 3 HOH A 19 319 78 HOH HOH . E 3 HOH A 20 320 134 HOH HOH . E 3 HOH A 21 321 58 HOH HOH . E 3 HOH A 22 322 174 HOH HOH . E 3 HOH A 23 323 167 HOH HOH . E 3 HOH A 24 324 79 HOH HOH . E 3 HOH A 25 325 175 HOH HOH . E 3 HOH A 26 326 39 HOH HOH . E 3 HOH A 27 327 41 HOH HOH . E 3 HOH A 28 328 106 HOH HOH . E 3 HOH A 29 329 131 HOH HOH . E 3 HOH A 30 330 116 HOH HOH . E 3 HOH A 31 331 59 HOH HOH . E 3 HOH A 32 332 16 HOH HOH . E 3 HOH A 33 333 75 HOH HOH . E 3 HOH A 34 334 47 HOH HOH . E 3 HOH A 35 335 93 HOH HOH . E 3 HOH A 36 336 77 HOH HOH . E 3 HOH A 37 337 102 HOH HOH . E 3 HOH A 38 338 29 HOH HOH . E 3 HOH A 39 339 20 HOH HOH . E 3 HOH A 40 340 152 HOH HOH . E 3 HOH A 41 341 2 HOH HOH . E 3 HOH A 42 342 7 HOH HOH . E 3 HOH A 43 343 46 HOH HOH . E 3 HOH A 44 344 145 HOH HOH . E 3 HOH A 45 345 144 HOH HOH . E 3 HOH A 46 346 4 HOH HOH . E 3 HOH A 47 347 38 HOH HOH . E 3 HOH A 48 348 185 HOH HOH . E 3 HOH A 49 349 135 HOH HOH . E 3 HOH A 50 350 138 HOH HOH . E 3 HOH A 51 351 53 HOH HOH . E 3 HOH A 52 352 81 HOH HOH . E 3 HOH A 53 353 187 HOH HOH . E 3 HOH A 54 354 162 HOH HOH . E 3 HOH A 55 355 94 HOH HOH . E 3 HOH A 56 356 28 HOH HOH . E 3 HOH A 57 357 9 HOH HOH . E 3 HOH A 58 358 61 HOH HOH . E 3 HOH A 59 359 22 HOH HOH . E 3 HOH A 60 360 103 HOH HOH . E 3 HOH A 61 361 56 HOH HOH . E 3 HOH A 62 362 12 HOH HOH . E 3 HOH A 63 363 146 HOH HOH . E 3 HOH A 64 364 176 HOH HOH . E 3 HOH A 65 365 27 HOH HOH . E 3 HOH A 66 366 25 HOH HOH . E 3 HOH A 67 367 50 HOH HOH . E 3 HOH A 68 368 67 HOH HOH . E 3 HOH A 69 369 24 HOH HOH . E 3 HOH A 70 370 23 HOH HOH . E 3 HOH A 71 371 114 HOH HOH . E 3 HOH A 72 372 14 HOH HOH . E 3 HOH A 73 373 17 HOH HOH . E 3 HOH A 74 374 32 HOH HOH . E 3 HOH A 75 375 74 HOH HOH . E 3 HOH A 76 376 95 HOH HOH . E 3 HOH A 77 377 161 HOH HOH . E 3 HOH A 78 378 10 HOH HOH . E 3 HOH A 79 379 173 HOH HOH . E 3 HOH A 80 380 76 HOH HOH . E 3 HOH A 81 381 49 HOH HOH . E 3 HOH A 82 382 52 HOH HOH . E 3 HOH A 83 383 124 HOH HOH . E 3 HOH A 84 384 89 HOH HOH . E 3 HOH A 85 385 180 HOH HOH . E 3 HOH A 86 386 44 HOH HOH . E 3 HOH A 87 387 179 HOH HOH . E 3 HOH A 88 388 66 HOH HOH . E 3 HOH A 89 389 184 HOH HOH . E 3 HOH A 90 390 104 HOH HOH . E 3 HOH A 91 391 164 HOH HOH . E 3 HOH A 92 392 62 HOH HOH . E 3 HOH A 93 393 171 HOH HOH . E 3 HOH A 94 394 65 HOH HOH . E 3 HOH A 95 395 169 HOH HOH . E 3 HOH A 96 396 42 HOH HOH . E 3 HOH A 97 397 147 HOH HOH . E 3 HOH A 98 398 190 HOH HOH . E 3 HOH A 99 399 57 HOH HOH . E 3 HOH A 100 400 86 HOH HOH . E 3 HOH A 101 401 82 HOH HOH . E 3 HOH A 102 402 140 HOH HOH . E 3 HOH A 103 403 105 HOH HOH . E 3 HOH A 104 404 172 HOH HOH . E 3 HOH A 105 405 149 HOH HOH . E 3 HOH A 106 406 166 HOH HOH . E 3 HOH A 107 407 64 HOH HOH . E 3 HOH A 108 408 118 HOH HOH . E 3 HOH A 109 409 107 HOH HOH . F 3 HOH B 1 301 84 HOH HOH . F 3 HOH B 2 302 15 HOH HOH . F 3 HOH B 3 303 30 HOH HOH . F 3 HOH B 4 304 97 HOH HOH . F 3 HOH B 5 305 120 HOH HOH . F 3 HOH B 6 306 108 HOH HOH . F 3 HOH B 7 307 43 HOH HOH . F 3 HOH B 8 308 5 HOH HOH . F 3 HOH B 9 309 34 HOH HOH . F 3 HOH B 10 310 60 HOH HOH . F 3 HOH B 11 311 72 HOH HOH . F 3 HOH B 12 312 112 HOH HOH . F 3 HOH B 13 313 6 HOH HOH . F 3 HOH B 14 314 33 HOH HOH . F 3 HOH B 15 315 92 HOH HOH . F 3 HOH B 16 316 13 HOH HOH . F 3 HOH B 17 317 19 HOH HOH . F 3 HOH B 18 318 68 HOH HOH . F 3 HOH B 19 319 21 HOH HOH . F 3 HOH B 20 320 168 HOH HOH . F 3 HOH B 21 321 177 HOH HOH . F 3 HOH B 22 322 69 HOH HOH . F 3 HOH B 23 323 26 HOH HOH . F 3 HOH B 24 324 181 HOH HOH . F 3 HOH B 25 325 48 HOH HOH . F 3 HOH B 26 326 160 HOH HOH . F 3 HOH B 27 327 188 HOH HOH . F 3 HOH B 28 328 8 HOH HOH . F 3 HOH B 29 329 96 HOH HOH . F 3 HOH B 30 330 40 HOH HOH . F 3 HOH B 31 331 136 HOH HOH . F 3 HOH B 32 332 119 HOH HOH . F 3 HOH B 33 333 55 HOH HOH . F 3 HOH B 34 334 122 HOH HOH . F 3 HOH B 35 335 128 HOH HOH . F 3 HOH B 36 336 126 HOH HOH . F 3 HOH B 37 337 73 HOH HOH . F 3 HOH B 38 338 111 HOH HOH . F 3 HOH B 39 339 18 HOH HOH . F 3 HOH B 40 340 148 HOH HOH . F 3 HOH B 41 341 35 HOH HOH . F 3 HOH B 42 342 99 HOH HOH . F 3 HOH B 43 343 143 HOH HOH . F 3 HOH B 44 344 157 HOH HOH . F 3 HOH B 45 345 63 HOH HOH . F 3 HOH B 46 346 109 HOH HOH . F 3 HOH B 47 347 127 HOH HOH . F 3 HOH B 48 348 83 HOH HOH . F 3 HOH B 49 349 123 HOH HOH . F 3 HOH B 50 350 91 HOH HOH . F 3 HOH B 51 351 88 HOH HOH . F 3 HOH B 52 352 71 HOH HOH . F 3 HOH B 53 353 117 HOH HOH . F 3 HOH B 54 354 31 HOH HOH . F 3 HOH B 55 355 45 HOH HOH . F 3 HOH B 56 356 90 HOH HOH . F 3 HOH B 57 357 158 HOH HOH . F 3 HOH B 58 358 191 HOH HOH . F 3 HOH B 59 359 159 HOH HOH . F 3 HOH B 60 360 125 HOH HOH . F 3 HOH B 61 361 156 HOH HOH . F 3 HOH B 62 362 130 HOH HOH . F 3 HOH B 63 363 153 HOH HOH . F 3 HOH B 64 364 141 HOH HOH . F 3 HOH B 65 365 70 HOH HOH . F 3 HOH B 66 366 142 HOH HOH . F 3 HOH B 67 367 189 HOH HOH . F 3 HOH B 68 368 110 HOH HOH . F 3 HOH B 69 369 137 HOH HOH . F 3 HOH B 70 370 129 HOH HOH . F 3 HOH B 71 371 150 HOH HOH . F 3 HOH B 72 372 87 HOH HOH . F 3 HOH B 73 373 151 HOH HOH . F 3 HOH B 74 374 178 HOH HOH . F 3 HOH B 75 375 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AR6 . . . D 2 -1.735 53.913 20.318 1 54.42 ? N1 AR6 201 B 1 HETATM 2 C C2 AR6 . . . D 2 -1.902 52.605 20.02 1 57.39 ? C2 AR6 201 B 1 HETATM 3 N N3 AR6 . . . D 2 -2.954 52.117 19.337 1 55 ? N3 AR6 201 B 1 HETATM 4 C C4 AR6 . . . D 2 -3.921 52.951 18.902 1 59.47 ? C4 AR6 201 B 1 HETATM 5 C C5 AR6 . . . D 2 -3.809 54.394 19.191 1 60.72 ? C5 AR6 201 B 1 HETATM 6 C C6 AR6 . . . D 2 -2.617 54.853 19.939 1 56.74 ? C6 AR6 201 B 1 HETATM 7 N N6 AR6 . . . D 2 -2.425 56.158 20.243 1 58.46 ? N6 AR6 201 B 1 HETATM 8 N N7 AR6 . . . D 2 -4.893 54.984 18.658 1 63.36 ? N7 AR6 201 B 1 HETATM 9 C C8 AR6 . . . D 2 -5.644 54.012 18.079 1 64.87 ? C8 AR6 201 B 1 HETATM 10 N N9 AR6 . . . D 2 -5.057 52.797 18.222 1 63.88 ? N9 AR6 201 B 1 HETATM 11 P PA AR6 . . . D 2 -7.295 53.722 13.637 1 43.8 ? PA AR6 201 B 1 HETATM 12 P PB AR6 . . . D 2 -7.627 52.678 10.921 1 38.27 ? PB AR6 201 B 1 HETATM 13 C C1' AR6 . . . D 2 -5.573 51.491 17.732 1 63.87 ? C1' AR6 201 B 1 HETATM 14 O O1A AR6 . . . D 2 -6.372 54.919 13.797 1 45.29 ? O1A AR6 201 B 1 HETATM 15 O O1B AR6 . . . D 2 -6.577 52.236 9.937 1 37.18 ? O1B AR6 201 B 1 HETATM 16 C C1D AR6 . . . D 2 -7.724 58.163 11.633 1 58.19 ? C1D AR6 201 B 1 HETATM 17 O O1D AR6 . . . D 2 -8.794 59.134 11.662 1 59.81 ? O1D AR6 201 B 1 HETATM 18 C C2' AR6 . . . D 2 -7.096 51.465 17.825 1 62.35 ? C2' AR6 201 B 1 HETATM 19 O O2' AR6 . . . D 2 -7.528 51.04 19.121 1 59.75 ? O2' AR6 201 B 1 HETATM 20 O O2A AR6 . . . D 2 -8.795 53.868 13.653 1 48.6 ? O2A AR6 201 B 1 HETATM 21 O O2B AR6 . . . D 2 -8.828 51.798 11.222 1 38.42 ? O2B AR6 201 B 1 HETATM 22 C C2D AR6 . . . D 2 -6.752 58.416 10.476 1 55.17 ? C2D AR6 201 B 1 HETATM 23 O O2D AR6 . . . D 2 -6.531 59.809 10.16 1 53.78 ? O2D AR6 201 B 1 HETATM 24 C C3' AR6 . . . D 2 -7.469 50.518 16.704 1 63.34 ? C3' AR6 201 B 1 HETATM 25 O O3' AR6 . . . D 2 -7.56 49.177 17.165 1 66.94 ? O3' AR6 201 B 1 HETATM 26 O O3A AR6 . . . D 2 -6.813 52.963 12.284 1 43.63 ? O3A AR6 201 B 1 HETATM 27 C C3D AR6 . . . D 2 -7.383 57.612 9.343 1 50.96 ? C3D AR6 201 B 1 HETATM 28 O O3D AR6 . . . D 2 -8.288 58.414 8.591 1 48.61 ? O3D AR6 201 B 1 HETATM 29 C C4' AR6 . . . D 2 -6.323 50.571 15.706 1 58.69 ? C4' AR6 201 B 1 HETATM 30 O O4' AR6 . . . D 2 -5.217 51.212 16.355 1 62.51 ? O4' AR6 201 B 1 HETATM 31 C C4D AR6 . . . D 2 -8.131 56.48 10.033 1 48.13 ? C4D AR6 201 B 1 HETATM 32 O O4D AR6 . . . D 2 -8.266 56.846 11.415 1 54.54 ? O4D AR6 201 B 1 HETATM 33 C C5' AR6 . . . D 2 -6.77 51.317 14.475 1 53.2 ? C5' AR6 201 B 1 HETATM 34 O O5' AR6 . . . D 2 -6.944 52.689 14.816 1 48.11 ? O5' AR6 201 B 1 HETATM 35 C C5D AR6 . . . D 2 -7.39 55.152 9.934 1 46.54 ? C5D AR6 201 B 1 HETATM 36 O O5D AR6 . . . D 2 -8.219 54.104 10.447 1 42.82 ? O5D AR6 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #