data_6R0H # _model_server_result.job_id 7TEsma49N1A1kpBc_jGNuw _model_server_result.datetime_utc '2025-01-10 18:48:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 6R0H # _exptl.entry_id 6R0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R0H _cell.length_a 128.287 _cell.length_b 128.287 _cell.length_c 116.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.12 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.278 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 6R0H _atom_sites.fract_transf_matrix[1][1] 0.007795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007795 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JN2 A 1 901 1 JN2 672 . C 3 PLP A 1 902 920 PLP PLP . D 4 HOH A 1 1001 11 HOH HOH . D 4 HOH A 2 1002 179 HOH HOH . D 4 HOH A 3 1003 193 HOH HOH . D 4 HOH A 4 1004 94 HOH HOH . D 4 HOH A 5 1005 111 HOH HOH . D 4 HOH A 6 1006 63 HOH HOH . D 4 HOH A 7 1007 276 HOH HOH . D 4 HOH A 8 1008 146 HOH HOH . D 4 HOH A 9 1009 37 HOH HOH . D 4 HOH A 10 1010 100 HOH HOH . D 4 HOH A 11 1011 115 HOH HOH . D 4 HOH A 12 1012 40 HOH HOH . D 4 HOH A 13 1013 43 HOH HOH . D 4 HOH A 14 1014 17 HOH HOH . D 4 HOH A 15 1015 155 HOH HOH . D 4 HOH A 16 1016 272 HOH HOH . D 4 HOH A 17 1017 192 HOH HOH . D 4 HOH A 18 1018 70 HOH HOH . D 4 HOH A 19 1019 106 HOH HOH . D 4 HOH A 20 1020 86 HOH HOH . D 4 HOH A 21 1021 51 HOH HOH . D 4 HOH A 22 1022 260 HOH HOH . D 4 HOH A 23 1023 102 HOH HOH . D 4 HOH A 24 1024 99 HOH HOH . D 4 HOH A 25 1025 50 HOH HOH . D 4 HOH A 26 1026 173 HOH HOH . D 4 HOH A 27 1027 145 HOH HOH . D 4 HOH A 28 1028 96 HOH HOH . D 4 HOH A 29 1029 126 HOH HOH . D 4 HOH A 30 1030 259 HOH HOH . D 4 HOH A 31 1031 116 HOH HOH . D 4 HOH A 32 1032 121 HOH HOH . D 4 HOH A 33 1033 18 HOH HOH . D 4 HOH A 34 1034 288 HOH HOH . D 4 HOH A 35 1035 118 HOH HOH . D 4 HOH A 36 1036 30 HOH HOH . D 4 HOH A 37 1037 72 HOH HOH . D 4 HOH A 38 1038 60 HOH HOH . D 4 HOH A 39 1039 293 HOH HOH . D 4 HOH A 40 1040 103 HOH HOH . D 4 HOH A 41 1041 93 HOH HOH . D 4 HOH A 42 1042 137 HOH HOH . D 4 HOH A 43 1043 14 HOH HOH . D 4 HOH A 44 1044 198 HOH HOH . D 4 HOH A 45 1045 130 HOH HOH . D 4 HOH A 46 1046 61 HOH HOH . D 4 HOH A 47 1047 68 HOH HOH . D 4 HOH A 48 1048 85 HOH HOH . D 4 HOH A 49 1049 58 HOH HOH . D 4 HOH A 50 1050 71 HOH HOH . D 4 HOH A 51 1051 101 HOH HOH . D 4 HOH A 52 1052 139 HOH HOH . D 4 HOH A 53 1053 89 HOH HOH . D 4 HOH A 54 1054 23 HOH HOH . D 4 HOH A 55 1055 28 HOH HOH . D 4 HOH A 56 1056 87 HOH HOH . D 4 HOH A 57 1057 36 HOH HOH . D 4 HOH A 58 1058 113 HOH HOH . D 4 HOH A 59 1059 2 HOH HOH . D 4 HOH A 60 1060 95 HOH HOH . D 4 HOH A 61 1061 117 HOH HOH . D 4 HOH A 62 1062 136 HOH HOH . D 4 HOH A 63 1063 97 HOH HOH . D 4 HOH A 64 1064 263 HOH HOH . D 4 HOH A 65 1065 84 HOH HOH . D 4 HOH A 66 1066 76 HOH HOH . D 4 HOH A 67 1067 49 HOH HOH . D 4 HOH A 68 1068 62 HOH HOH . D 4 HOH A 69 1069 296 HOH HOH . D 4 HOH A 70 1070 55 HOH HOH . D 4 HOH A 71 1071 79 HOH HOH . D 4 HOH A 72 1072 25 HOH HOH . D 4 HOH A 73 1073 147 HOH HOH . D 4 HOH A 74 1074 285 HOH HOH . D 4 HOH A 75 1075 73 HOH HOH . D 4 HOH A 76 1076 123 HOH HOH . D 4 HOH A 77 1077 8 HOH HOH . D 4 HOH A 78 1078 129 HOH HOH . D 4 HOH A 79 1079 98 HOH HOH . D 4 HOH A 80 1080 287 HOH HOH . D 4 HOH A 81 1081 270 HOH HOH . D 4 HOH A 82 1082 157 HOH HOH . D 4 HOH A 83 1083 7 HOH HOH . D 4 HOH A 84 1084 104 HOH HOH . D 4 HOH A 85 1085 105 HOH HOH . D 4 HOH A 86 1086 135 HOH HOH . D 4 HOH A 87 1087 5 HOH HOH . D 4 HOH A 88 1088 107 HOH HOH . D 4 HOH A 89 1089 138 HOH HOH . D 4 HOH A 90 1090 299 HOH HOH . D 4 HOH A 91 1091 38 HOH HOH . D 4 HOH A 92 1092 54 HOH HOH . D 4 HOH A 93 1093 33 HOH HOH . D 4 HOH A 94 1094 201 HOH HOH . D 4 HOH A 95 1095 114 HOH HOH . D 4 HOH A 96 1096 26 HOH HOH . D 4 HOH A 97 1097 144 HOH HOH . D 4 HOH A 98 1098 149 HOH HOH . D 4 HOH A 99 1099 82 HOH HOH . D 4 HOH A 100 1100 42 HOH HOH . D 4 HOH A 101 1101 302 HOH HOH . D 4 HOH A 102 1102 120 HOH HOH . D 4 HOH A 103 1103 24 HOH HOH . D 4 HOH A 104 1104 39 HOH HOH . D 4 HOH A 105 1105 196 HOH HOH . D 4 HOH A 106 1106 27 HOH HOH . D 4 HOH A 107 1107 150 HOH HOH . D 4 HOH A 108 1108 208 HOH HOH . D 4 HOH A 109 1109 81 HOH HOH . D 4 HOH A 110 1110 78 HOH HOH . D 4 HOH A 111 1111 143 HOH HOH . D 4 HOH A 112 1112 66 HOH HOH . D 4 HOH A 113 1113 34 HOH HOH . D 4 HOH A 114 1114 163 HOH HOH . D 4 HOH A 115 1115 174 HOH HOH . D 4 HOH A 116 1116 77 HOH HOH . D 4 HOH A 117 1117 9 HOH HOH . D 4 HOH A 118 1118 46 HOH HOH . D 4 HOH A 119 1119 31 HOH HOH . D 4 HOH A 120 1120 6 HOH HOH . D 4 HOH A 121 1121 108 HOH HOH . D 4 HOH A 122 1122 65 HOH HOH . D 4 HOH A 123 1123 119 HOH HOH . D 4 HOH A 124 1124 170 HOH HOH . D 4 HOH A 125 1125 180 HOH HOH . D 4 HOH A 126 1126 128 HOH HOH . D 4 HOH A 127 1127 13 HOH HOH . D 4 HOH A 128 1128 41 HOH HOH . D 4 HOH A 129 1129 294 HOH HOH . D 4 HOH A 130 1130 19 HOH HOH . D 4 HOH A 131 1131 16 HOH HOH . D 4 HOH A 132 1132 110 HOH HOH . D 4 HOH A 133 1133 267 HOH HOH . D 4 HOH A 134 1134 152 HOH HOH . D 4 HOH A 135 1135 83 HOH HOH . D 4 HOH A 136 1136 12 HOH HOH . D 4 HOH A 137 1137 246 HOH HOH . D 4 HOH A 138 1138 172 HOH HOH . D 4 HOH A 139 1139 280 HOH HOH . D 4 HOH A 140 1140 80 HOH HOH . D 4 HOH A 141 1141 57 HOH HOH . D 4 HOH A 142 1142 90 HOH HOH . D 4 HOH A 143 1143 52 HOH HOH . D 4 HOH A 144 1144 290 HOH HOH . D 4 HOH A 145 1145 210 HOH HOH . D 4 HOH A 146 1146 75 HOH HOH . D 4 HOH A 147 1147 227 HOH HOH . D 4 HOH A 148 1148 22 HOH HOH . D 4 HOH A 149 1149 124 HOH HOH . D 4 HOH A 150 1150 122 HOH HOH . D 4 HOH A 151 1151 47 HOH HOH . D 4 HOH A 152 1152 269 HOH HOH . D 4 HOH A 153 1153 112 HOH HOH . D 4 HOH A 154 1154 1 HOH HOH . D 4 HOH A 155 1155 92 HOH HOH . D 4 HOH A 156 1156 300 HOH HOH . D 4 HOH A 157 1157 253 HOH HOH . D 4 HOH A 158 1158 69 HOH HOH . D 4 HOH A 159 1159 264 HOH HOH . D 4 HOH A 160 1160 305 HOH HOH . D 4 HOH A 161 1161 53 HOH HOH . D 4 HOH A 162 1162 21 HOH HOH . D 4 HOH A 163 1163 44 HOH HOH . D 4 HOH A 164 1164 45 HOH HOH . D 4 HOH A 165 1165 127 HOH HOH . D 4 HOH A 166 1166 10 HOH HOH . D 4 HOH A 167 1167 159 HOH HOH . D 4 HOH A 168 1168 182 HOH HOH . D 4 HOH A 169 1169 4 HOH HOH . D 4 HOH A 170 1170 247 HOH HOH . D 4 HOH A 171 1171 303 HOH HOH . D 4 HOH A 172 1172 307 HOH HOH . D 4 HOH A 173 1173 56 HOH HOH . D 4 HOH A 174 1174 251 HOH HOH . D 4 HOH A 175 1175 241 HOH HOH . D 4 HOH A 176 1176 35 HOH HOH . D 4 HOH A 177 1177 240 HOH HOH . D 4 HOH A 178 1178 250 HOH HOH . D 4 HOH A 179 1179 153 HOH HOH . D 4 HOH A 180 1180 20 HOH HOH . D 4 HOH A 181 1181 292 HOH HOH . D 4 HOH A 182 1182 154 HOH HOH . D 4 HOH A 183 1183 209 HOH HOH . D 4 HOH A 184 1184 243 HOH HOH . D 4 HOH A 185 1185 88 HOH HOH . D 4 HOH A 186 1186 3 HOH HOH . D 4 HOH A 187 1187 295 HOH HOH . D 4 HOH A 188 1188 141 HOH HOH . D 4 HOH A 189 1189 298 HOH HOH . D 4 HOH A 190 1190 255 HOH HOH . D 4 HOH A 191 1191 301 HOH HOH . D 4 HOH A 192 1192 278 HOH HOH . D 4 HOH A 193 1193 249 HOH HOH . D 4 HOH A 194 1194 275 HOH HOH . D 4 HOH A 195 1195 304 HOH HOH . D 4 HOH A 196 1196 268 HOH HOH . D 4 HOH A 197 1197 252 HOH HOH . D 4 HOH A 198 1198 289 HOH HOH . D 4 HOH A 199 1199 282 HOH HOH . D 4 HOH A 200 1200 248 HOH HOH . D 4 HOH A 201 1201 265 HOH HOH . D 4 HOH A 202 1202 284 HOH HOH . D 4 HOH A 203 1203 32 HOH HOH . D 4 HOH A 204 1204 256 HOH HOH . D 4 HOH A 205 1205 64 HOH HOH . D 4 HOH A 206 1206 261 HOH HOH . D 4 HOH A 207 1207 283 HOH HOH . D 4 HOH A 208 1208 217 HOH HOH . D 4 HOH A 209 1209 306 HOH HOH . D 4 HOH A 210 1210 291 HOH HOH . D 4 HOH A 211 1211 262 HOH HOH . D 4 HOH A 212 1212 297 HOH HOH . D 4 HOH A 213 1213 242 HOH HOH . D 4 HOH A 214 1214 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 24.528 25.531 30.306 1 17.98 ? N1 PLP 902 A 1 HETATM 2 C C2 PLP . . . C 3 23.429 24.799 30.5 1 17.28 ? C2 PLP 902 A 1 HETATM 3 C C2A PLP . . . C 3 22.452 25.269 31.516 1 17.27 ? C2A PLP 902 A 1 HETATM 4 C C3 PLP . . . C 3 23.21 23.612 29.803 1 17.26 ? C3 PLP 902 A 1 HETATM 5 O O3 PLP . . . C 3 22.07 22.909 30.045 1 17.02 ? O3 PLP 902 A 1 HETATM 6 C C4 PLP . . . C 3 24.142 23.209 28.831 1 18.51 ? C4 PLP 902 A 1 HETATM 7 C C4A PLP . . . C 3 23.899 21.974 28.076 1 19.71 ? C4A PLP 902 A 1 HETATM 8 C C5 PLP . . . C 3 25.27 24.02 28.612 1 18.77 ? C5 PLP 902 A 1 HETATM 9 C C6 PLP . . . C 3 25.421 25.15 29.376 1 18.3 ? C6 PLP 902 A 1 HETATM 10 C C5A PLP . . . C 3 26.309 23.695 27.576 1 18.93 ? C5A PLP 902 A 1 HETATM 11 O O4P PLP . . . C 3 25.889 24.364 26.348 1 19.35 ? O4P PLP 902 A 1 HETATM 12 P P PLP . . . C 3 26.95 24.672 25.14 1 20.53 ? P PLP 902 A 1 HETATM 13 O O1P PLP . . . C 3 26.002 25.18 24.05 1 19.27 ? O1P PLP 902 A 1 HETATM 14 O O2P PLP . . . C 3 27.914 25.708 25.702 1 17.37 ? O2P PLP 902 A 1 HETATM 15 O O3P PLP . . . C 3 27.623 23.371 24.767 1 17.51 ? O3P PLP 902 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #