data_6R0U # _model_server_result.job_id 0BIaLuYOahi515dP7uR5Sw _model_server_result.datetime_utc '2024-11-05 08:00:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6R0U # _exptl.entry_id 6R0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-Thalidomide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R0U _cell.length_a 56.952 _cell.length_b 59.583 _cell.length_c 89.053 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,O 1 1 B,H,I,J,K,P 2 1 C,L,M,N,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 L ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 L ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 L ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 L ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'C13 H10 N2 O4' _chem_comp.formula_weight 258.229 _chem_comp.id EF2 _chem_comp.mon_nstd_flag . _chem_comp.name S-Thalidomide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 EF2 doub 83 n n C02 N03 EF2 sing 84 n n C02 C08 EF2 sing 85 n n N03 C04 EF2 sing 86 n n C04 O05 EF2 doub 87 n n C04 C06 EF2 sing 88 n n C06 C07 EF2 sing 89 n n C07 C08 EF2 sing 90 n n C08 N09 EF2 sing 91 n n N09 C3 EF2 sing 92 n n N09 C4 EF2 sing 93 n n C11 C12 EF2 sing 94 n y C11 C20 EF2 doub 95 n y C12 C13 EF2 doub 96 n y C13 C14 EF2 sing 97 n y C13 C4 EF2 sing 98 n n C14 C19 EF2 doub 99 n y C14 C3 EF2 sing 100 n n O16 C4 EF2 doub 101 n n O18 C3 EF2 doub 102 n n C19 C20 EF2 sing 103 n y N03 H03 EF2 sing 104 n n C08 H08 EF2 sing 105 n n C06 H061 EF2 sing 106 n n C06 H062 EF2 sing 107 n n C07 H071 EF2 sing 108 n n C07 H072 EF2 sing 109 n n C11 H11 EF2 sing 110 n n C12 H12 EF2 sing 111 n n C20 H20 EF2 sing 112 n n C19 H19 EF2 sing 113 n n # _atom_sites.entry_id 6R0U _atom_sites.fract_transf_matrix[1][1] 0.017559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 150 ZN ZN . E 3 EF2 A 1 202 151 EF2 thx . F 4 PO4 A 1 203 160 PO4 PO4 . G 5 CL A 1 204 161 CL CL . H 2 ZN B 1 201 150 ZN ZN . I 6 JO8 B 1 202 151 JO8 DRa . J 4 PO4 B 1 203 160 PO4 PO4 . K 5 CL B 1 204 161 CL CL . L 2 ZN C 1 201 150 ZN ZN . M 7 JO5 C 1 202 151 JO5 DRG . N 4 PO4 C 1 203 160 PO4 PO4 . O 8 HOH A 1 301 100 HOH HOH . O 8 HOH A 2 302 175 HOH HOH . O 8 HOH A 3 303 18 HOH HOH . O 8 HOH A 4 304 48 HOH HOH . O 8 HOH A 5 305 135 HOH HOH . O 8 HOH A 6 306 9 HOH HOH . O 8 HOH A 7 307 69 HOH HOH . O 8 HOH A 8 308 101 HOH HOH . O 8 HOH A 9 309 56 HOH HOH . O 8 HOH A 10 310 153 HOH HOH . O 8 HOH A 11 311 107 HOH HOH . O 8 HOH A 12 312 51 HOH HOH . O 8 HOH A 13 313 106 HOH HOH . O 8 HOH A 14 314 79 HOH HOH . O 8 HOH A 15 315 95 HOH HOH . O 8 HOH A 16 316 16 HOH HOH . O 8 HOH A 17 317 21 HOH HOH . O 8 HOH A 18 318 76 HOH HOH . O 8 HOH A 19 319 47 HOH HOH . O 8 HOH A 20 320 148 HOH HOH . O 8 HOH A 21 321 176 HOH HOH . O 8 HOH A 22 322 72 HOH HOH . O 8 HOH A 23 323 161 HOH HOH . O 8 HOH A 24 324 99 HOH HOH . O 8 HOH A 25 325 154 HOH HOH . O 8 HOH A 26 326 37 HOH HOH . O 8 HOH A 27 327 8 HOH HOH . O 8 HOH A 28 328 30 HOH HOH . O 8 HOH A 29 329 2 HOH HOH . O 8 HOH A 30 330 7 HOH HOH . O 8 HOH A 31 331 60 HOH HOH . O 8 HOH A 32 332 6 HOH HOH . O 8 HOH A 33 333 50 HOH HOH . O 8 HOH A 34 334 185 HOH HOH . O 8 HOH A 35 335 104 HOH HOH . O 8 HOH A 36 336 80 HOH HOH . O 8 HOH A 37 337 15 HOH HOH . O 8 HOH A 38 338 23 HOH HOH . O 8 HOH A 39 339 19 HOH HOH . O 8 HOH A 40 340 93 HOH HOH . O 8 HOH A 41 341 91 HOH HOH . O 8 HOH A 42 342 27 HOH HOH . O 8 HOH A 43 343 12 HOH HOH . O 8 HOH A 44 344 45 HOH HOH . O 8 HOH A 45 345 170 HOH HOH . O 8 HOH A 46 346 183 HOH HOH . O 8 HOH A 47 347 92 HOH HOH . O 8 HOH A 48 348 151 HOH HOH . O 8 HOH A 49 349 71 HOH HOH . O 8 HOH A 50 350 24 HOH HOH . O 8 HOH A 51 351 43 HOH HOH . O 8 HOH A 52 352 17 HOH HOH . O 8 HOH A 53 353 103 HOH HOH . O 8 HOH A 54 354 67 HOH HOH . O 8 HOH A 55 355 36 HOH HOH . O 8 HOH A 56 356 73 HOH HOH . O 8 HOH A 57 357 94 HOH HOH . O 8 HOH A 58 358 105 HOH HOH . O 8 HOH A 59 359 29 HOH HOH . O 8 HOH A 60 360 90 HOH HOH . O 8 HOH A 61 361 144 HOH HOH . O 8 HOH A 62 362 63 HOH HOH . O 8 HOH A 63 363 66 HOH HOH . O 8 HOH A 64 364 171 HOH HOH . O 8 HOH A 65 365 160 HOH HOH . O 8 HOH A 66 366 149 HOH HOH . O 8 HOH A 67 367 102 HOH HOH . O 8 HOH A 68 368 173 HOH HOH . O 8 HOH A 69 369 62 HOH HOH . O 8 HOH A 70 370 96 HOH HOH . O 8 HOH A 71 371 68 HOH HOH . O 8 HOH A 72 372 108 HOH HOH . O 8 HOH A 73 373 88 HOH HOH . O 8 HOH A 74 374 152 HOH HOH . P 8 HOH B 1 301 39 HOH HOH . P 8 HOH B 2 302 44 HOH HOH . P 8 HOH B 3 303 156 HOH HOH . P 8 HOH B 4 304 178 HOH HOH . P 8 HOH B 5 305 155 HOH HOH . P 8 HOH B 6 306 147 HOH HOH . P 8 HOH B 7 307 137 HOH HOH . P 8 HOH B 8 308 184 HOH HOH . P 8 HOH B 9 309 13 HOH HOH . P 8 HOH B 10 310 26 HOH HOH . P 8 HOH B 11 311 120 HOH HOH . P 8 HOH B 12 312 70 HOH HOH . P 8 HOH B 13 313 20 HOH HOH . P 8 HOH B 14 314 115 HOH HOH . P 8 HOH B 15 315 167 HOH HOH . P 8 HOH B 16 316 53 HOH HOH . P 8 HOH B 17 317 11 HOH HOH . P 8 HOH B 18 318 118 HOH HOH . P 8 HOH B 19 319 35 HOH HOH . P 8 HOH B 20 320 114 HOH HOH . P 8 HOH B 21 321 98 HOH HOH . P 8 HOH B 22 322 3 HOH HOH . P 8 HOH B 23 323 141 HOH HOH . P 8 HOH B 24 324 4 HOH HOH . P 8 HOH B 25 325 10 HOH HOH . P 8 HOH B 26 326 177 HOH HOH . P 8 HOH B 27 327 146 HOH HOH . P 8 HOH B 28 328 109 HOH HOH . P 8 HOH B 29 329 111 HOH HOH . P 8 HOH B 30 330 42 HOH HOH . P 8 HOH B 31 331 159 HOH HOH . P 8 HOH B 32 332 119 HOH HOH . P 8 HOH B 33 333 1 HOH HOH . P 8 HOH B 34 334 14 HOH HOH . P 8 HOH B 35 335 113 HOH HOH . P 8 HOH B 36 336 25 HOH HOH . P 8 HOH B 37 337 75 HOH HOH . P 8 HOH B 38 338 32 HOH HOH . P 8 HOH B 39 339 54 HOH HOH . P 8 HOH B 40 340 134 HOH HOH . P 8 HOH B 41 341 157 HOH HOH . P 8 HOH B 42 342 52 HOH HOH . P 8 HOH B 43 343 142 HOH HOH . P 8 HOH B 44 344 112 HOH HOH . P 8 HOH B 45 345 86 HOH HOH . P 8 HOH B 46 346 110 HOH HOH . P 8 HOH B 47 347 87 HOH HOH . P 8 HOH B 48 348 116 HOH HOH . P 8 HOH B 49 349 85 HOH HOH . P 8 HOH B 50 350 117 HOH HOH . P 8 HOH B 51 351 5 HOH HOH . P 8 HOH B 52 352 55 HOH HOH . P 8 HOH B 53 353 133 HOH HOH . P 8 HOH B 54 354 31 HOH HOH . P 8 HOH B 55 355 33 HOH HOH . P 8 HOH B 56 356 143 HOH HOH . P 8 HOH B 57 357 180 HOH HOH . P 8 HOH B 58 358 38 HOH HOH . P 8 HOH B 59 359 64 HOH HOH . P 8 HOH B 60 360 78 HOH HOH . P 8 HOH B 61 361 77 HOH HOH . P 8 HOH B 62 362 172 HOH HOH . P 8 HOH B 63 363 162 HOH HOH . P 8 HOH B 64 364 140 HOH HOH . P 8 HOH B 65 365 40 HOH HOH . Q 8 HOH C 1 301 126 HOH HOH . Q 8 HOH C 2 302 138 HOH HOH . Q 8 HOH C 3 303 125 HOH HOH . Q 8 HOH C 4 304 61 HOH HOH . Q 8 HOH C 5 305 82 HOH HOH . Q 8 HOH C 6 306 150 HOH HOH . Q 8 HOH C 7 307 132 HOH HOH . Q 8 HOH C 8 308 46 HOH HOH . Q 8 HOH C 9 309 49 HOH HOH . Q 8 HOH C 10 310 121 HOH HOH . Q 8 HOH C 11 311 122 HOH HOH . Q 8 HOH C 12 312 158 HOH HOH . Q 8 HOH C 13 313 136 HOH HOH . Q 8 HOH C 14 314 128 HOH HOH . Q 8 HOH C 15 315 179 HOH HOH . Q 8 HOH C 16 316 168 HOH HOH . Q 8 HOH C 17 317 22 HOH HOH . Q 8 HOH C 18 318 166 HOH HOH . Q 8 HOH C 19 319 65 HOH HOH . Q 8 HOH C 20 320 123 HOH HOH . Q 8 HOH C 21 321 28 HOH HOH . Q 8 HOH C 22 322 182 HOH HOH . Q 8 HOH C 23 323 97 HOH HOH . Q 8 HOH C 24 324 129 HOH HOH . Q 8 HOH C 25 325 131 HOH HOH . Q 8 HOH C 26 326 41 HOH HOH . Q 8 HOH C 27 327 58 HOH HOH . Q 8 HOH C 28 328 139 HOH HOH . Q 8 HOH C 29 329 145 HOH HOH . Q 8 HOH C 30 330 130 HOH HOH . Q 8 HOH C 31 331 83 HOH HOH . Q 8 HOH C 32 332 164 HOH HOH . Q 8 HOH C 33 333 34 HOH HOH . Q 8 HOH C 34 334 84 HOH HOH . Q 8 HOH C 35 335 169 HOH HOH . Q 8 HOH C 36 336 59 HOH HOH . Q 8 HOH C 37 337 74 HOH HOH . Q 8 HOH C 38 338 89 HOH HOH . Q 8 HOH C 39 339 165 HOH HOH . Q 8 HOH C 40 340 81 HOH HOH . Q 8 HOH C 41 341 124 HOH HOH . Q 8 HOH C 42 342 174 HOH HOH . Q 8 HOH C 43 343 57 HOH HOH . Q 8 HOH C 44 344 127 HOH HOH . Q 8 HOH C 45 345 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 EF2 . . . E 3 26.245 16.658 -8.587 1 30 ? O01 EF2 202 A 1 HETATM 2 C C02 EF2 . . . E 3 25.25 17.021 -8.031 1 29.94 ? C02 EF2 202 A 1 HETATM 3 N N03 EF2 . . . E 3 24.029 16.45 -8.162 1 29.51 ? N03 EF2 202 A 1 HETATM 4 C C04 EF2 . . . E 3 22.908 16.896 -7.5 1 27.48 ? C04 EF2 202 A 1 HETATM 5 O O05 EF2 . . . E 3 21.865 16.276 -7.447 1 24.5 ? O05 EF2 202 A 1 HETATM 6 C C06 EF2 . . . E 3 23.018 18.104 -6.62 1 27.12 ? C06 EF2 202 A 1 HETATM 7 C C07 EF2 . . . E 3 24.058 18.994 -7.189 1 28.55 ? C07 EF2 202 A 1 HETATM 8 C C08 EF2 . . . E 3 25.342 18.207 -7.141 1 29.2 ? C08 EF2 202 A 1 HETATM 9 N N09 EF2 . . . E 3 26.336 19.109 -7.614 1 33.41 ? N09 EF2 202 A 1 HETATM 10 C C11 EF2 . . . E 3 29.274 22.02 -9.748 1 43.79 ? C11 EF2 202 A 1 HETATM 11 C C12 EF2 . . . E 3 28.158 21.23 -10.017 1 41.48 ? C12 EF2 202 A 1 HETATM 12 C C13 EF2 . . . E 3 27.633 20.48 -8.948 1 38.41 ? C13 EF2 202 A 1 HETATM 13 C C14 EF2 . . . E 3 28.218 20.507 -7.675 1 38.31 ? C14 EF2 202 A 1 HETATM 14 O O16 EF2 . . . E 3 25.643 19.272 -9.884 1 35.34 ? O16 EF2 202 A 1 HETATM 15 O O18 EF2 . . . E 3 27.467 19.196 -5.75 1 31.19 ? O18 EF2 202 A 1 HETATM 16 C C19 EF2 . . . E 3 29.351 21.276 -7.406 1 41.53 ? C19 EF2 202 A 1 HETATM 17 C C20 EF2 . . . E 3 29.894 22.027 -8.472 1 43 ? C20 EF2 202 A 1 HETATM 18 C C3 EF2 . . . E 3 27.333 19.6 -6.896 1 33.99 ? C3 EF2 202 A 1 HETATM 19 C C4 EF2 . . . E 3 26.547 19.648 -8.828 1 35.15 ? C4 EF2 202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #