data_6R0V # _model_server_result.job_id u-dDW5QLpa8yolNhtzswtA _model_server_result.datetime_utc '2024-12-04 04:07:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":202}' # _entry.id 6R0V # _exptl.entry_id 6R0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.216 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-4-nitro-benzoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R0V _cell.length_a 56.747 _cell.length_b 58.815 _cell.length_c 88.568 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,P 1 1 B,I,J,K,L,Q 2 1 C,M,N,O,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 J N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C12 H9 N3 O7' _chem_comp.formula_weight 307.216 _chem_comp.id JO2 _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-4-nitro-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 N3 JO2 doub 173 n n O4 N3 JO2 sing 174 n n N3 C10 JO2 sing 175 n n C10 C11 JO2 doub 176 n y C10 C9 JO2 sing 177 n y C11 C6 JO2 sing 178 n y C9 C8 JO2 doub 179 n y O2 C2 JO2 doub 180 n n N1 C2 JO2 sing 181 n n N1 C3 JO2 sing 182 n n C2 C1 JO2 sing 183 n n C3 O1 JO2 doub 184 n n C3 C4 JO2 sing 185 n n C6 C7 JO2 sing 186 n n C6 C5 JO2 doub 187 n y C8 C5 JO2 sing 188 n y N2 C1 JO2 sing 189 n n N2 C7 JO2 sing 190 n n C1 C4 JO2 sing 191 n n C7 O3 JO2 doub 192 n n C5 C12 JO2 sing 193 n n C12 O6 JO2 doub 194 n n C12 O7 JO2 sing 195 n n C4 H1 JO2 sing 196 n n C4 H2 JO2 sing 197 n n C11 H3 JO2 sing 198 n n C8 H4 JO2 sing 199 n n C9 H5 JO2 sing 200 n n N1 H6 JO2 sing 201 n n N2 H7 JO2 sing 202 n n C1 H8 JO2 sing 203 n n O7 H9 JO2 sing 204 n n # _atom_sites.entry_id 6R0V _atom_sites.fract_transf_matrix[1][1] 0.017622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 150 ZN ZN . E 3 JO2 A 1 202 151 JO2 DRG . F 4 PO4 A 1 203 160 PO4 PO4 . G 4 PO4 A 1 204 161 PO4 PO4 . H 4 PO4 A 1 205 161 PO4 PO4 . I 2 ZN B 1 201 150 ZN ZN . J 3 JO2 B 1 202 151 JO2 DRG . K 4 PO4 B 1 203 160 PO4 PO4 . L 5 CL B 1 204 162 CL CL . M 2 ZN C 1 201 150 ZN ZN . N 3 JO2 C 1 202 151 JO2 DRG . O 4 PO4 C 1 203 160 PO4 PO4 . P 6 HOH A 1 301 46 HOH HOH . P 6 HOH A 2 302 112 HOH HOH . P 6 HOH A 3 303 25 HOH HOH . P 6 HOH A 4 304 49 HOH HOH . P 6 HOH A 5 305 5 HOH HOH . P 6 HOH A 6 306 8 HOH HOH . P 6 HOH A 7 307 149 HOH HOH . P 6 HOH A 8 308 109 HOH HOH . P 6 HOH A 9 309 116 HOH HOH . P 6 HOH A 10 310 84 HOH HOH . P 6 HOH A 11 311 118 HOH HOH . P 6 HOH A 12 312 27 HOH HOH . P 6 HOH A 13 313 145 HOH HOH . P 6 HOH A 14 314 14 HOH HOH . P 6 HOH A 15 315 97 HOH HOH . P 6 HOH A 16 316 83 HOH HOH . P 6 HOH A 17 317 113 HOH HOH . P 6 HOH A 18 318 64 HOH HOH . P 6 HOH A 19 319 17 HOH HOH . P 6 HOH A 20 320 19 HOH HOH . P 6 HOH A 21 321 121 HOH HOH . P 6 HOH A 22 322 1 HOH HOH . P 6 HOH A 23 323 90 HOH HOH . P 6 HOH A 24 324 22 HOH HOH . P 6 HOH A 25 325 122 HOH HOH . P 6 HOH A 26 326 71 HOH HOH . P 6 HOH A 27 327 117 HOH HOH . P 6 HOH A 28 328 110 HOH HOH . P 6 HOH A 29 329 52 HOH HOH . P 6 HOH A 30 330 55 HOH HOH . P 6 HOH A 31 331 35 HOH HOH . P 6 HOH A 32 332 11 HOH HOH . P 6 HOH A 33 333 78 HOH HOH . P 6 HOH A 34 334 108 HOH HOH . P 6 HOH A 35 335 170 HOH HOH . P 6 HOH A 36 336 91 HOH HOH . P 6 HOH A 37 337 28 HOH HOH . P 6 HOH A 38 338 114 HOH HOH . P 6 HOH A 39 339 2 HOH HOH . P 6 HOH A 40 340 119 HOH HOH . P 6 HOH A 41 341 92 HOH HOH . P 6 HOH A 42 342 111 HOH HOH . P 6 HOH A 43 343 105 HOH HOH . P 6 HOH A 44 344 37 HOH HOH . P 6 HOH A 45 345 103 HOH HOH . P 6 HOH A 46 346 165 HOH HOH . P 6 HOH A 47 347 85 HOH HOH . P 6 HOH A 48 348 67 HOH HOH . P 6 HOH A 49 349 96 HOH HOH . P 6 HOH A 50 350 107 HOH HOH . P 6 HOH A 51 351 172 HOH HOH . P 6 HOH A 52 352 18 HOH HOH . P 6 HOH A 53 353 173 HOH HOH . P 6 HOH A 54 354 16 HOH HOH . P 6 HOH A 55 355 68 HOH HOH . P 6 HOH A 56 356 80 HOH HOH . P 6 HOH A 57 357 144 HOH HOH . P 6 HOH A 58 358 62 HOH HOH . P 6 HOH A 59 359 150 HOH HOH . P 6 HOH A 60 360 7 HOH HOH . P 6 HOH A 61 361 9 HOH HOH . P 6 HOH A 62 362 43 HOH HOH . P 6 HOH A 63 363 44 HOH HOH . P 6 HOH A 64 364 158 HOH HOH . P 6 HOH A 65 365 136 HOH HOH . P 6 HOH A 66 366 79 HOH HOH . P 6 HOH A 67 367 166 HOH HOH . P 6 HOH A 68 368 142 HOH HOH . P 6 HOH A 69 369 143 HOH HOH . P 6 HOH A 70 370 82 HOH HOH . P 6 HOH A 71 371 146 HOH HOH . P 6 HOH A 72 372 164 HOH HOH . P 6 HOH A 73 373 157 HOH HOH . P 6 HOH A 74 374 48 HOH HOH . P 6 HOH A 75 375 104 HOH HOH . P 6 HOH A 76 376 147 HOH HOH . Q 6 HOH B 1 301 38 HOH HOH . Q 6 HOH B 2 302 154 HOH HOH . Q 6 HOH B 3 303 47 HOH HOH . Q 6 HOH B 4 304 69 HOH HOH . Q 6 HOH B 5 305 15 HOH HOH . Q 6 HOH B 6 306 127 HOH HOH . Q 6 HOH B 7 307 129 HOH HOH . Q 6 HOH B 8 308 50 HOH HOH . Q 6 HOH B 9 309 100 HOH HOH . Q 6 HOH B 10 310 95 HOH HOH . Q 6 HOH B 11 311 6 HOH HOH . Q 6 HOH B 12 312 126 HOH HOH . Q 6 HOH B 13 313 93 HOH HOH . Q 6 HOH B 14 314 70 HOH HOH . Q 6 HOH B 15 315 125 HOH HOH . Q 6 HOH B 16 316 39 HOH HOH . Q 6 HOH B 17 317 141 HOH HOH . Q 6 HOH B 18 318 130 HOH HOH . Q 6 HOH B 19 319 61 HOH HOH . Q 6 HOH B 20 320 102 HOH HOH . Q 6 HOH B 21 321 81 HOH HOH . Q 6 HOH B 22 322 36 HOH HOH . Q 6 HOH B 23 323 41 HOH HOH . Q 6 HOH B 24 324 30 HOH HOH . Q 6 HOH B 25 325 56 HOH HOH . Q 6 HOH B 26 326 101 HOH HOH . Q 6 HOH B 27 327 42 HOH HOH . Q 6 HOH B 28 328 99 HOH HOH . Q 6 HOH B 29 329 10 HOH HOH . Q 6 HOH B 30 330 33 HOH HOH . Q 6 HOH B 31 331 98 HOH HOH . Q 6 HOH B 32 332 13 HOH HOH . Q 6 HOH B 33 333 163 HOH HOH . Q 6 HOH B 34 334 140 HOH HOH . Q 6 HOH B 35 335 128 HOH HOH . Q 6 HOH B 36 336 151 HOH HOH . Q 6 HOH B 37 337 74 HOH HOH . Q 6 HOH B 38 338 77 HOH HOH . Q 6 HOH B 39 339 86 HOH HOH . Q 6 HOH B 40 340 4 HOH HOH . Q 6 HOH B 41 341 132 HOH HOH . Q 6 HOH B 42 342 3 HOH HOH . Q 6 HOH B 43 343 12 HOH HOH . Q 6 HOH B 44 344 120 HOH HOH . Q 6 HOH B 45 345 23 HOH HOH . Q 6 HOH B 46 346 51 HOH HOH . Q 6 HOH B 47 347 76 HOH HOH . Q 6 HOH B 48 348 20 HOH HOH . Q 6 HOH B 49 349 94 HOH HOH . Q 6 HOH B 50 350 171 HOH HOH . Q 6 HOH B 51 351 65 HOH HOH . Q 6 HOH B 52 352 54 HOH HOH . Q 6 HOH B 53 353 31 HOH HOH . Q 6 HOH B 54 354 133 HOH HOH . Q 6 HOH B 55 355 131 HOH HOH . Q 6 HOH B 56 356 40 HOH HOH . Q 6 HOH B 57 357 32 HOH HOH . Q 6 HOH B 58 358 148 HOH HOH . Q 6 HOH B 59 359 124 HOH HOH . Q 6 HOH B 60 360 24 HOH HOH . Q 6 HOH B 61 361 87 HOH HOH . Q 6 HOH B 62 362 123 HOH HOH . Q 6 HOH B 63 363 63 HOH HOH . R 6 HOH C 1 301 159 HOH HOH . R 6 HOH C 2 302 160 HOH HOH . R 6 HOH C 3 303 29 HOH HOH . R 6 HOH C 4 304 167 HOH HOH . R 6 HOH C 5 305 168 HOH HOH . R 6 HOH C 6 306 135 HOH HOH . R 6 HOH C 7 307 139 HOH HOH . R 6 HOH C 8 308 45 HOH HOH . R 6 HOH C 9 309 152 HOH HOH . R 6 HOH C 10 310 134 HOH HOH . R 6 HOH C 11 311 60 HOH HOH . R 6 HOH C 12 312 26 HOH HOH . R 6 HOH C 13 313 58 HOH HOH . R 6 HOH C 14 314 156 HOH HOH . R 6 HOH C 15 315 106 HOH HOH . R 6 HOH C 16 316 169 HOH HOH . R 6 HOH C 17 317 66 HOH HOH . R 6 HOH C 18 318 161 HOH HOH . R 6 HOH C 19 319 59 HOH HOH . R 6 HOH C 20 320 21 HOH HOH . R 6 HOH C 21 321 115 HOH HOH . R 6 HOH C 22 322 137 HOH HOH . R 6 HOH C 23 323 89 HOH HOH . R 6 HOH C 24 324 34 HOH HOH . R 6 HOH C 25 325 53 HOH HOH . R 6 HOH C 26 326 88 HOH HOH . R 6 HOH C 27 327 155 HOH HOH . R 6 HOH C 28 328 57 HOH HOH . R 6 HOH C 29 329 153 HOH HOH . R 6 HOH C 30 330 138 HOH HOH . R 6 HOH C 31 331 73 HOH HOH . R 6 HOH C 32 332 75 HOH HOH . R 6 HOH C 33 333 72 HOH HOH . R 6 HOH C 34 334 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JO2 . . . J 3 24.143 11.812 26.385 1 18.82 ? C4 JO2 202 B 1 HETATM 2 C C5 JO2 . . . J 3 25.683 16.302 29.971 1 31.59 ? C5 JO2 202 B 1 HETATM 3 C C6 JO2 . . . J 3 24.596 15.784 29.259 1 28.95 ? C6 JO2 202 B 1 HETATM 4 C C11 JO2 . . . J 3 23.305 15.912 29.717 1 30.72 ? C11 JO2 202 B 1 HETATM 5 C C7 JO2 . . . J 3 24.756 15.12 27.93 1 24.94 ? C7 JO2 202 B 1 HETATM 6 C C8 JO2 . . . J 3 25.426 16.923 31.196 1 33.7 ? C8 JO2 202 B 1 HETATM 7 C C9 JO2 . . . J 3 24.141 17.02 31.703 1 34.15 ? C9 JO2 202 B 1 HETATM 8 C C10 JO2 . . . J 3 23.088 16.515 30.94 1 36.14 ? C10 JO2 202 B 1 HETATM 9 C C12 JO2 . . . J 3 27.093 16.177 29.442 1 33.66 ? C12 JO2 202 B 1 HETATM 10 N N1 JO2 . . . J 3 22.13 12.448 25.377 1 20.25 ? N1 JO2 202 B 1 HETATM 11 N N2 JO2 . . . J 3 24.198 13.901 27.775 1 22.47 ? N2 JO2 202 B 1 HETATM 12 C C3 JO2 . . . J 3 22.978 11.384 25.54 1 18.43 ? C3 JO2 202 B 1 HETATM 13 N N3 JO2 . . . J 3 21.714 16.572 31.395 1 40.27 ? N3 JO2 202 B 1 HETATM 14 C C1 JO2 . . . J 3 23.994 13.335 26.459 1 20.5 ? C1 JO2 202 B 1 HETATM 15 C C2 JO2 . . . J 3 22.581 13.591 25.959 1 20.27 ? C2 JO2 202 B 1 HETATM 16 O O1 JO2 . . . J 3 22.808 10.319 24.997 1 18.64 ? O1 JO2 202 B 1 HETATM 17 O O2 JO2 . . . J 3 21.979 14.642 26.01 1 21.85 ? O2 JO2 202 B 1 HETATM 18 O O3 JO2 . . . J 3 25.358 15.7 27.035 1 23.97 ? O3 JO2 202 B 1 HETATM 19 O O4 JO2 . . . J 3 20.831 16.628 30.544 1 42.55 ? O4 JO2 202 B 1 HETATM 20 O O5 JO2 . . . J 3 21.483 16.49 32.594 1 49.06 ? O5 JO2 202 B 1 HETATM 21 O O6 JO2 . . . J 3 27.461 15.055 29.022 1 30.57 ? O6 JO2 202 B 1 HETATM 22 O O7 JO2 . . . J 3 27.816 17.204 29.393 1 36.39 ? O7 JO2 202 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #