data_6R11
#
_model_server_result.job_id            w4NdxIc3lVzJ6OwO8sifAA 
_model_server_result.datetime_utc      '2024-11-05 07:48:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    6R11 
#
_exptl.entry_id    6R11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              259.218 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-azanyl-2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]isoindole-1,3-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6R11 
_cell.length_a            56.66 
_cell.length_b            58.709 
_cell.length_c            88.013 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,L 1 1 
B,G,H,I,J,M 2 1 
C,K,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 K ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
#
_chem_comp.formula           'C12 H9 N3 O4' 
_chem_comp.formula_weight    259.218 
_chem_comp.id                JOB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-azanyl-2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]isoindole-1,3-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C10 JOB sing 173 n n 
C9 C10 JOB doub 174 n y 
C9 C6 JOB sing 175 n y 
O3 C5 JOB doub 176 n n 
C10 C11 JOB sing 177 n y 
C6 C5 JOB sing 178 n n 
C6 C7 JOB doub 179 n y 
C5 N2 JOB sing 180 n n 
C11 C12 JOB doub 181 n y 
O1 C4 JOB doub 182 n n 
N1 C4 JOB sing 183 n n 
N1 C1 JOB sing 184 n n 
C4 C3 JOB sing 185 n n 
C7 C12 JOB sing 186 n y 
C7 C8 JOB sing 187 n n 
N2 C3 JOB sing 188 n n 
N2 C8 JOB sing 189 n n 
C1 O2 JOB doub 190 n n 
C1 C2 JOB sing 191 n n 
C3 C2 JOB sing 192 n n 
C8 O4 JOB doub 193 n n 
C11 H1 JOB sing 194 n n 
C9 H2 JOB sing 195 n n 
C12 H3 JOB sing 196 n n 
N1 H4 JOB sing 197 n n 
C3 H5 JOB sing 198 n n 
N3 H6 JOB sing 199 n n 
N3 H7 JOB sing 200 n n 
C2 H8 JOB sing 201 n n 
C2 H9 JOB sing 202 n n 
#
_atom_sites.entry_id                     6R11 
_atom_sites.fract_transf_matrix[1][1]    0.017649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011362 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 201 ZN ZN . 
E 3 JOB A 1 202 202 JOB JOB . 
F 4 PO4 A 1 203 203 PO4 PO4 . 
G 2 ZN B 1 201 201 ZN ZN . 
H 3 JOB B 1 202 202 JOB JOB . 
I 4 PO4 B 1 203 203 PO4 PO4 . 
J 5 CL B 1 204 204 CL CL . 
K 2 ZN C 1 201 201 ZN ZN . 
L 6 HOH A 1 301 306 HOH HOH . 
L 6 HOH A 2 302 301 HOH HOH . 
L 6 HOH A 3 303 302 HOH HOH . 
L 6 HOH A 4 304 303 HOH HOH . 
L 6 HOH A 5 305 304 HOH HOH . 
L 6 HOH A 6 306 305 HOH HOH . 
L 6 HOH A 7 307 307 HOH HOH . 
L 6 HOH A 8 308 308 HOH HOH . 
L 6 HOH A 9 309 314 HOH HOH . 
L 6 HOH A 10 310 309 HOH HOH . 
L 6 HOH A 11 311 310 HOH HOH . 
L 6 HOH A 12 312 311 HOH HOH . 
L 6 HOH A 13 313 313 HOH HOH . 
L 6 HOH A 14 314 315 HOH HOH . 
L 6 HOH A 15 315 316 HOH HOH . 
L 6 HOH A 16 316 317 HOH HOH . 
L 6 HOH A 17 317 312 HOH HOH . 
L 6 HOH A 18 318 318 HOH HOH . 
L 6 HOH A 19 319 319 HOH HOH . 
L 6 HOH A 20 320 321 HOH HOH . 
L 6 HOH A 21 321 322 HOH HOH . 
L 6 HOH A 22 322 323 HOH HOH . 
L 6 HOH A 23 323 324 HOH HOH . 
L 6 HOH A 24 324 325 HOH HOH . 
L 6 HOH A 25 325 326 HOH HOH . 
L 6 HOH A 26 326 327 HOH HOH . 
L 6 HOH A 27 327 328 HOH HOH . 
L 6 HOH A 28 328 329 HOH HOH . 
L 6 HOH A 29 329 330 HOH HOH . 
L 6 HOH A 30 330 331 HOH HOH . 
L 6 HOH A 31 331 332 HOH HOH . 
L 6 HOH A 32 332 333 HOH HOH . 
L 6 HOH A 33 333 334 HOH HOH . 
L 6 HOH A 34 334 335 HOH HOH . 
L 6 HOH A 35 335 336 HOH HOH . 
L 6 HOH A 36 336 337 HOH HOH . 
L 6 HOH A 37 337 338 HOH HOH . 
L 6 HOH A 38 338 339 HOH HOH . 
L 6 HOH A 39 339 340 HOH HOH . 
L 6 HOH A 40 340 341 HOH HOH . 
L 6 HOH A 41 341 342 HOH HOH . 
L 6 HOH A 42 342 343 HOH HOH . 
L 6 HOH A 43 343 344 HOH HOH . 
L 6 HOH A 44 344 345 HOH HOH . 
L 6 HOH A 45 345 346 HOH HOH . 
L 6 HOH A 46 346 347 HOH HOH . 
L 6 HOH A 47 347 348 HOH HOH . 
L 6 HOH A 48 348 320 HOH HOH . 
L 6 HOH A 49 349 349 HOH HOH . 
L 6 HOH A 50 350 350 HOH HOH . 
L 6 HOH A 51 351 351 HOH HOH . 
L 6 HOH A 52 352 352 HOH HOH . 
L 6 HOH A 53 353 353 HOH HOH . 
L 6 HOH A 54 354 354 HOH HOH . 
L 6 HOH A 55 355 355 HOH HOH . 
L 6 HOH A 56 356 356 HOH HOH . 
L 6 HOH A 57 357 357 HOH HOH . 
L 6 HOH A 58 358 358 HOH HOH . 
L 6 HOH A 59 359 359 HOH HOH . 
L 6 HOH A 60 360 360 HOH HOH . 
L 6 HOH A 61 361 361 HOH HOH . 
L 6 HOH A 62 362 362 HOH HOH . 
L 6 HOH A 63 363 363 HOH HOH . 
L 6 HOH A 64 364 364 HOH HOH . 
L 6 HOH A 65 365 365 HOH HOH . 
L 6 HOH A 66 366 366 HOH HOH . 
L 6 HOH A 67 367 367 HOH HOH . 
L 6 HOH A 68 368 368 HOH HOH . 
M 6 HOH B 1 301 301 HOH HOH . 
M 6 HOH B 2 302 302 HOH HOH . 
M 6 HOH B 3 303 303 HOH HOH . 
M 6 HOH B 4 304 304 HOH HOH . 
M 6 HOH B 5 305 305 HOH HOH . 
M 6 HOH B 6 306 306 HOH HOH . 
M 6 HOH B 7 307 307 HOH HOH . 
M 6 HOH B 8 308 308 HOH HOH . 
M 6 HOH B 9 309 309 HOH HOH . 
M 6 HOH B 10 310 310 HOH HOH . 
M 6 HOH B 11 311 311 HOH HOH . 
M 6 HOH B 12 312 312 HOH HOH . 
M 6 HOH B 13 313 313 HOH HOH . 
M 6 HOH B 14 314 314 HOH HOH . 
M 6 HOH B 15 315 315 HOH HOH . 
M 6 HOH B 16 316 316 HOH HOH . 
M 6 HOH B 17 317 317 HOH HOH . 
M 6 HOH B 18 318 318 HOH HOH . 
M 6 HOH B 19 319 319 HOH HOH . 
M 6 HOH B 20 320 320 HOH HOH . 
M 6 HOH B 21 321 321 HOH HOH . 
M 6 HOH B 22 322 322 HOH HOH . 
M 6 HOH B 23 323 323 HOH HOH . 
M 6 HOH B 24 324 324 HOH HOH . 
M 6 HOH B 25 325 325 HOH HOH . 
M 6 HOH B 26 326 326 HOH HOH . 
M 6 HOH B 27 327 327 HOH HOH . 
M 6 HOH B 28 328 328 HOH HOH . 
M 6 HOH B 29 329 329 HOH HOH . 
M 6 HOH B 30 330 330 HOH HOH . 
M 6 HOH B 31 331 331 HOH HOH . 
M 6 HOH B 32 332 332 HOH HOH . 
M 6 HOH B 33 333 333 HOH HOH . 
M 6 HOH B 34 334 334 HOH HOH . 
M 6 HOH B 35 335 335 HOH HOH . 
M 6 HOH B 36 336 336 HOH HOH . 
M 6 HOH B 37 337 337 HOH HOH . 
M 6 HOH B 38 338 338 HOH HOH . 
M 6 HOH B 39 339 339 HOH HOH . 
M 6 HOH B 40 340 340 HOH HOH . 
M 6 HOH B 41 341 341 HOH HOH . 
M 6 HOH B 42 342 342 HOH HOH . 
M 6 HOH B 43 343 343 HOH HOH . 
M 6 HOH B 44 344 344 HOH HOH . 
M 6 HOH B 45 345 345 HOH HOH . 
M 6 HOH B 46 346 346 HOH HOH . 
M 6 HOH B 47 347 347 HOH HOH . 
M 6 HOH B 48 348 348 HOH HOH . 
M 6 HOH B 49 349 349 HOH HOH . 
M 6 HOH B 50 350 350 HOH HOH . 
M 6 HOH B 51 351 351 HOH HOH . 
N 6 HOH C 1 301 301 HOH HOH . 
N 6 HOH C 2 302 303 HOH HOH . 
N 6 HOH C 3 303 304 HOH HOH . 
N 6 HOH C 4 304 302 HOH HOH . 
N 6 HOH C 5 305 305 HOH HOH . 
N 6 HOH C 6 306 306 HOH HOH . 
N 6 HOH C 7 307 307 HOH HOH . 
N 6 HOH C 8 308 308 HOH HOH . 
N 6 HOH C 9 309 309 HOH HOH . 
N 6 HOH C 10 310 310 HOH HOH . 
N 6 HOH C 11 311 311 HOH HOH . 
N 6 HOH C 12 312 312 HOH HOH . 
N 6 HOH C 13 313 313 HOH HOH . 
N 6 HOH C 14 314 314 HOH HOH . 
N 6 HOH C 15 315 315 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 JOB . . . E 3 25.044 15.92 -8.012 1 30.4 ? C4 JOB 202 A 1 
HETATM 2 C C5 JOB . . . E 3 25.811 18.714 -8.898 1 38.99 ? C5 JOB 202 A 1 
HETATM 3 C C6 JOB . . . E 3 26.911 19.702 -8.998 1 44.77 ? C6 JOB 202 A 1 
HETATM 4 C C11 JOB . . . E 3 29.048 21.389 -8.638 1 53.49 ? C11 JOB 202 A 1 
HETATM 5 C C7 JOB . . . E 3 27.562 19.751 -7.78 1 44.21 ? C7 JOB 202 A 1 
HETATM 6 C C8 JOB . . . E 3 26.902 18.796 -6.859 1 38.98 ? C8 JOB 202 A 1 
HETATM 7 C C9 JOB . . . E 3 27.297 20.48 -10.061 1 50.09 ? C9 JOB 202 A 1 
HETATM 8 C C10 JOB . . . E 3 28.39 21.343 -9.874 1 54.03 ? C10 JOB 202 A 1 
HETATM 9 C C12 JOB . . . E 3 28.64 20.593 -7.579 1 49.22 ? C12 JOB 202 A 1 
HETATM 10 N N1 JOB . . . E 3 23.75 15.534 -8.229 1 29.43 ? N1 JOB 202 A 1 
HETATM 11 N N2 JOB . . . E 3 25.892 18.186 -7.608 1 35.44 ? N2 JOB 202 A 1 
HETATM 12 C C3 JOB . . . E 3 25.034 17.132 -7.106 1 30.54 ? C3 JOB 202 A 1 
HETATM 13 N N3 JOB . . . E 3 28.816 22.147 -10.918 1 61.54 ? N3 JOB 202 A 1 
HETATM 14 C C1 JOB . . . E 3 22.83 16.351 -7.617 1 30.74 ? C1 JOB 202 A 1 
HETATM 15 C C2 JOB . . . E 3 23.554 17.538 -7.047 1 31.34 ? C2 JOB 202 A 1 
HETATM 16 O O1 JOB . . . E 3 26.033 15.379 -8.47 1 30.86 ? O1 JOB 202 A 1 
HETATM 17 O O2 JOB . . . E 3 21.634 16.119 -7.564 1 26.52 ? O2 JOB 202 A 1 
HETATM 18 O O3 JOB . . . E 3 24.986 18.388 -9.72 1 37.72 ? O3 JOB 202 A 1 
HETATM 19 O O4 JOB . . . E 3 27.138 18.55 -5.7 1 32.87 ? O4 JOB 202 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#