data_6R12 # _model_server_result.job_id fxpPdi69xLbacJmQ847MUw _model_server_result.datetime_utc '2024-12-04 16:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6R12 # _exptl.entry_id 6R12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R12 _cell.length_a 56.417 _cell.length_b 58.795 _cell.length_c 88.234 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,O 1 1 B,H,I,J,K,L,P 2 1 C,M,N,Q 3 1 D,R 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -28.2085 -29.3975 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 M ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 321 n n P O2 PO4 sing 322 n n P O3 PO4 sing 323 n n P O4 PO4 sing 324 n n # _atom_sites.entry_id 6R12 _atom_sites.fract_transf_matrix[1][1] 0.017725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 201 201 ZN ZN . F 4 EF2 A 1 202 202 EF2 EF2 . G 5 PO4 A 1 203 203 PO4 PO4 . H 3 ZN B 1 201 201 ZN ZN . I 6 JOT B 1 202 202 JOT JOT . J 5 PO4 B 1 203 203 PO4 PO4 . K 7 CL B 1 204 204 CL CL . L 7 CL B 1 205 205 CL CL . M 3 ZN C 1 201 201 ZN ZN . N 4 EF2 C 1 202 202 EF2 EF2 . O 8 HOH A 1 301 301 HOH HOH . O 8 HOH A 2 302 306 HOH HOH . O 8 HOH A 3 303 302 HOH HOH . O 8 HOH A 4 304 305 HOH HOH . O 8 HOH A 5 305 304 HOH HOH . O 8 HOH A 6 306 303 HOH HOH . O 8 HOH A 7 307 313 HOH HOH . O 8 HOH A 8 308 312 HOH HOH . O 8 HOH A 9 309 314 HOH HOH . O 8 HOH A 10 310 310 HOH HOH . O 8 HOH A 11 311 325 HOH HOH . O 8 HOH A 12 312 309 HOH HOH . O 8 HOH A 13 313 308 HOH HOH . O 8 HOH A 14 314 316 HOH HOH . O 8 HOH A 15 315 307 HOH HOH . O 8 HOH A 16 316 327 HOH HOH . O 8 HOH A 17 317 322 HOH HOH . O 8 HOH A 18 318 315 HOH HOH . O 8 HOH A 19 319 321 HOH HOH . O 8 HOH A 20 320 324 HOH HOH . O 8 HOH A 21 321 319 HOH HOH . O 8 HOH A 22 322 318 HOH HOH . O 8 HOH A 23 323 323 HOH HOH . O 8 HOH A 24 324 326 HOH HOH . O 8 HOH A 25 325 330 HOH HOH . O 8 HOH A 26 326 345 HOH HOH . O 8 HOH A 27 327 317 HOH HOH . O 8 HOH A 28 328 311 HOH HOH . O 8 HOH A 29 329 331 HOH HOH . O 8 HOH A 30 330 329 HOH HOH . O 8 HOH A 31 331 328 HOH HOH . O 8 HOH A 32 332 320 HOH HOH . O 8 HOH A 33 333 340 HOH HOH . O 8 HOH A 34 334 347 HOH HOH . O 8 HOH A 35 335 338 HOH HOH . O 8 HOH A 36 336 341 HOH HOH . O 8 HOH A 37 337 333 HOH HOH . O 8 HOH A 38 338 334 HOH HOH . O 8 HOH A 39 339 336 HOH HOH . O 8 HOH A 40 340 343 HOH HOH . O 8 HOH A 41 341 337 HOH HOH . O 8 HOH A 42 342 335 HOH HOH . O 8 HOH A 43 343 332 HOH HOH . O 8 HOH A 44 344 342 HOH HOH . O 8 HOH A 45 345 353 HOH HOH . O 8 HOH A 46 346 344 HOH HOH . O 8 HOH A 47 347 339 HOH HOH . O 8 HOH A 48 348 348 HOH HOH . O 8 HOH A 49 349 354 HOH HOH . O 8 HOH A 50 350 351 HOH HOH . O 8 HOH A 51 351 356 HOH HOH . O 8 HOH A 52 352 350 HOH HOH . O 8 HOH A 53 353 346 HOH HOH . O 8 HOH A 54 354 355 HOH HOH . O 8 HOH A 55 355 349 HOH HOH . O 8 HOH A 56 356 361 HOH HOH . O 8 HOH A 57 357 360 HOH HOH . O 8 HOH A 58 358 357 HOH HOH . O 8 HOH A 59 359 358 HOH HOH . O 8 HOH A 60 360 359 HOH HOH . O 8 HOH A 61 361 362 HOH HOH . O 8 HOH A 62 362 364 HOH HOH . O 8 HOH A 63 363 363 HOH HOH . O 8 HOH A 64 364 366 HOH HOH . O 8 HOH A 65 365 365 HOH HOH . O 8 HOH A 66 366 367 HOH HOH . O 8 HOH A 67 367 368 HOH HOH . O 8 HOH A 68 368 371 HOH HOH . O 8 HOH A 69 369 369 HOH HOH . O 8 HOH A 70 370 370 HOH HOH . O 8 HOH A 71 371 372 HOH HOH . O 8 HOH A 72 372 374 HOH HOH . O 8 HOH A 73 373 373 HOH HOH . O 8 HOH A 74 374 375 HOH HOH . O 8 HOH A 75 375 376 HOH HOH . P 8 HOH B 1 301 301 HOH HOH . P 8 HOH B 2 302 302 HOH HOH . P 8 HOH B 3 303 303 HOH HOH . P 8 HOH B 4 304 343 HOH HOH . P 8 HOH B 5 305 305 HOH HOH . P 8 HOH B 6 306 349 HOH HOH . P 8 HOH B 7 307 304 HOH HOH . P 8 HOH B 8 308 307 HOH HOH . P 8 HOH B 9 309 306 HOH HOH . P 8 HOH B 10 310 308 HOH HOH . P 8 HOH B 11 311 321 HOH HOH . P 8 HOH B 12 312 336 HOH HOH . P 8 HOH B 13 313 319 HOH HOH . P 8 HOH B 14 314 310 HOH HOH . P 8 HOH B 15 315 309 HOH HOH . P 8 HOH B 16 316 311 HOH HOH . P 8 HOH B 17 317 318 HOH HOH . P 8 HOH B 18 318 315 HOH HOH . P 8 HOH B 19 319 314 HOH HOH . P 8 HOH B 20 320 323 HOH HOH . P 8 HOH B 21 321 333 HOH HOH . P 8 HOH B 22 322 325 HOH HOH . P 8 HOH B 23 323 326 HOH HOH . P 8 HOH B 24 324 313 HOH HOH . P 8 HOH B 25 325 316 HOH HOH . P 8 HOH B 26 326 344 HOH HOH . P 8 HOH B 27 327 320 HOH HOH . P 8 HOH B 28 328 328 HOH HOH . P 8 HOH B 29 329 322 HOH HOH . P 8 HOH B 30 330 312 HOH HOH . P 8 HOH B 31 331 324 HOH HOH . P 8 HOH B 32 332 330 HOH HOH . P 8 HOH B 33 333 329 HOH HOH . P 8 HOH B 34 334 337 HOH HOH . P 8 HOH B 35 335 335 HOH HOH . P 8 HOH B 36 336 331 HOH HOH . P 8 HOH B 37 337 338 HOH HOH . P 8 HOH B 38 338 339 HOH HOH . P 8 HOH B 39 339 340 HOH HOH . P 8 HOH B 40 340 332 HOH HOH . P 8 HOH B 41 341 317 HOH HOH . P 8 HOH B 42 342 348 HOH HOH . P 8 HOH B 43 343 334 HOH HOH . P 8 HOH B 44 344 341 HOH HOH . P 8 HOH B 45 345 345 HOH HOH . P 8 HOH B 46 346 352 HOH HOH . P 8 HOH B 47 347 347 HOH HOH . P 8 HOH B 48 348 350 HOH HOH . P 8 HOH B 49 349 351 HOH HOH . P 8 HOH B 50 350 346 HOH HOH . P 8 HOH B 51 351 342 HOH HOH . P 8 HOH B 52 352 353 HOH HOH . P 8 HOH B 53 353 327 HOH HOH . P 8 HOH B 54 354 354 HOH HOH . P 8 HOH B 55 355 352 HOH HOH . P 8 HOH B 56 356 357 HOH HOH . P 8 HOH B 57 357 356 HOH HOH . P 8 HOH B 58 358 358 HOH HOH . P 8 HOH B 59 359 360 HOH HOH . P 8 HOH B 60 360 359 HOH HOH . P 8 HOH B 61 361 362 HOH HOH . P 8 HOH B 62 362 361 HOH HOH . P 8 HOH B 63 363 365 HOH HOH . P 8 HOH B 64 364 363 HOH HOH . P 8 HOH B 65 365 366 HOH HOH . P 8 HOH B 66 366 367 HOH HOH . P 8 HOH B 67 367 355 HOH HOH . P 8 HOH B 68 368 364 HOH HOH . P 8 HOH B 69 369 368 HOH HOH . P 8 HOH B 70 370 371 HOH HOH . P 8 HOH B 71 371 370 HOH HOH . P 8 HOH B 72 372 369 HOH HOH . P 8 HOH B 73 373 372 HOH HOH . P 8 HOH B 74 374 373 HOH HOH . P 8 HOH B 75 375 374 HOH HOH . P 8 HOH B 76 376 375 HOH HOH . P 8 HOH B 77 377 376 HOH HOH . P 8 HOH B 78 378 377 HOH HOH . P 8 HOH B 79 379 378 HOH HOH . Q 8 HOH C 1 301 302 HOH HOH . Q 8 HOH C 2 302 306 HOH HOH . Q 8 HOH C 3 303 309 HOH HOH . Q 8 HOH C 4 304 305 HOH HOH . Q 8 HOH C 5 305 301 HOH HOH . Q 8 HOH C 6 306 303 HOH HOH . Q 8 HOH C 7 307 307 HOH HOH . Q 8 HOH C 8 308 304 HOH HOH . Q 8 HOH C 9 309 317 HOH HOH . Q 8 HOH C 10 310 313 HOH HOH . Q 8 HOH C 11 311 320 HOH HOH . Q 8 HOH C 12 312 308 HOH HOH . Q 8 HOH C 13 313 314 HOH HOH . Q 8 HOH C 14 314 312 HOH HOH . Q 8 HOH C 15 315 322 HOH HOH . Q 8 HOH C 16 316 316 HOH HOH . Q 8 HOH C 17 317 310 HOH HOH . Q 8 HOH C 18 318 315 HOH HOH . Q 8 HOH C 19 319 311 HOH HOH . Q 8 HOH C 20 320 318 HOH HOH . Q 8 HOH C 21 321 321 HOH HOH . Q 8 HOH C 22 322 323 HOH HOH . Q 8 HOH C 23 323 324 HOH HOH . Q 8 HOH C 24 324 319 HOH HOH . Q 8 HOH C 25 325 325 HOH HOH . Q 8 HOH C 26 326 327 HOH HOH . Q 8 HOH C 27 327 328 HOH HOH . Q 8 HOH C 28 328 326 HOH HOH . Q 8 HOH C 29 329 330 HOH HOH . Q 8 HOH C 30 330 329 HOH HOH . Q 8 HOH C 31 331 332 HOH HOH . Q 8 HOH C 32 332 331 HOH HOH . Q 8 HOH C 33 333 334 HOH HOH . Q 8 HOH C 34 334 333 HOH HOH . Q 8 HOH C 35 335 335 HOH HOH . R 8 HOH F 1 101 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 5 30.537 21.376 -0.911 0.8 44.68 ? P PO4 203 A 1 HETATM 2 O O1 PO4 . . . G 5 30.202 20.97 -2.352 0.8 48.02 ? O1 PO4 203 A 1 HETATM 3 O O2 PO4 . . . G 5 31.448 22.59 -0.873 0.8 44.71 ? O2 PO4 203 A 1 HETATM 4 O O3 PO4 . . . G 5 31.317 20.235 -0.296 0.8 44.42 ? O3 PO4 203 A 1 HETATM 5 O O4 PO4 . . . G 5 29.282 21.408 -0.224 0.8 38.3 ? O4 PO4 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #