data_6R16 # _model_server_result.job_id LgBnFd0Ik1eAhu7rUA9uag _model_server_result.datetime_utc '2024-11-29 09:09:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":901}' # _entry.id 6R16 # _exptl.entry_id 6R16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R16 _cell.length_a 104.37 _cell.length_b 117.21 _cell.length_c 138.42 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 Q N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 10 G CYS 382 1_555 J SG CYS 10 J CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? disulf ? disulf2 H SG CYS 10 H CYS 382 1_555 K SG CYS 10 K CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? disulf ? disulf3 I SG CYS 10 I CYS 382 1_555 L SG CYS 10 L CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc1 A O VAL 75 A VAL 684 1_555 M K K . A K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc2 A O GLN 78 A GLN 687 1_555 M K K . A K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc3 A O ASP 80 A ASP 689 1_555 M K K . A K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc4 A O ASN 85 A ASN 694 1_555 M K K . A K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.204 ? metalc ? metalc5 A O TYR 193 A TYR 802 1_555 M K K . A K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc6 B O VAL 75 B VAL 684 1_555 O K K . B K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc7 B O GLN 78 B GLN 687 1_555 O K K . B K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc8 B O ASP 80 B ASP 689 1_555 O K K . B K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc9 B O ASN 85 B ASN 694 1_555 O K K . B K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? metalc ? metalc10 B O TYR 193 B TYR 802 1_555 O K K . B K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc11 C O VAL 75 C VAL 684 1_555 P K K . C K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc12 C O GLN 78 C GLN 687 1_555 P K K . C K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc13 C O ASP 80 C ASP 689 1_555 P K K . C K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc14 C O ASN 85 C ASN 694 1_555 P K K . C K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc15 C O TYR 193 C TYR 802 1_555 P K K . C K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc16 D O VAL 75 D VAL 684 1_555 R K K . D K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc17 D O GLN 78 D GLN 687 1_555 R K K . D K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc18 D O ASP 80 D ASP 689 1_555 R K K . D K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc19 D O ASN 85 D ASN 694 1_555 R K K . D K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc20 D O TYR 193 D TYR 802 1_555 R K K . D K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc21 E O VAL 75 E VAL 684 1_555 T K K . E K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc22 E O GLN 78 E GLN 687 1_555 T K K . E K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc23 E O ASP 80 E ASP 689 1_555 T K K . E K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc24 E O ASN 85 E ASN 694 1_555 T K K . E K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc25 E O TYR 193 E TYR 802 1_555 T K K . E K 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc26 F O VAL 75 F VAL 684 1_555 U K K . F K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc27 F O GLN 78 F GLN 687 1_555 U K K . F K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc28 F O ASP 80 F ASP 689 1_555 U K K . F K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc29 F O ASN 85 F ASN 694 1_555 U K K . F K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.246 ? metalc ? metalc30 F O TYR 193 F TYR 802 1_555 U K K . F K 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc31 G SG CYS 9 G CYS 381 1_555 V ZN ZN . G ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc32 G SG CYS 10 G CYS 382 1_555 V ZN ZN . G ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc33 V ZN ZN . G ZN 501 1_555 J SG CYS 10 J CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc34 V ZN ZN . G ZN 501 1_555 J ND1 HIS 12 J HIS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc35 H SG CYS 9 H CYS 381 1_555 W ZN ZN . H ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc36 H SG CYS 10 H CYS 382 1_555 W ZN ZN . H ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc37 W ZN ZN . H ZN 501 1_555 K SG CYS 10 K CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc38 W ZN ZN . H ZN 501 1_555 K ND1 HIS 12 K HIS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc39 I SG CYS 9 I CYS 381 1_555 X ZN ZN . I ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc40 I SG CYS 10 I CYS 382 1_555 X ZN ZN . I ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc41 X ZN ZN . I ZN 501 1_555 L SG CYS 10 L CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc42 X ZN ZN . I ZN 501 1_555 L ND1 HIS 12 L HIS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6R16 _atom_sites.fract_transf_matrix[1][1] 0.009581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 K A 1 901 5 K K . N 4 EDO B 1 901 1 EDO EDO . O 3 K B 1 902 6 K K . P 3 K C 1 901 2 K K . Q 4 EDO D 1 901 2 EDO EDO . R 3 K D 1 902 3 K K . S 4 EDO E 1 901 3 EDO EDO . T 3 K E 1 902 1 K K . U 3 K F 1 901 4 K K . V 5 ZN G 1 501 1 ZN ZN . W 5 ZN H 1 501 2 ZN ZN . X 5 ZN I 1 501 3 ZN ZN . Y 6 HOH A 1 1001 55 HOH HOH . Y 6 HOH A 2 1002 14 HOH HOH . Y 6 HOH A 3 1003 17 HOH HOH . Y 6 HOH A 4 1004 11 HOH HOH . Y 6 HOH A 5 1005 4 HOH HOH . Y 6 HOH A 6 1006 62 HOH HOH . Y 6 HOH A 7 1007 25 HOH HOH . Y 6 HOH A 8 1008 90 HOH HOH . Y 6 HOH A 9 1009 43 HOH HOH . Y 6 HOH A 10 1010 5 HOH HOH . Y 6 HOH A 11 1011 78 HOH HOH . Y 6 HOH A 12 1012 19 HOH HOH . Y 6 HOH A 13 1013 63 HOH HOH . Y 6 HOH A 14 1014 86 HOH HOH . Y 6 HOH A 15 1015 89 HOH HOH . Z 6 HOH B 1 1001 39 HOH HOH . Z 6 HOH B 2 1002 45 HOH HOH . Z 6 HOH B 3 1003 67 HOH HOH . Z 6 HOH B 4 1004 79 HOH HOH . Z 6 HOH B 5 1005 20 HOH HOH . Z 6 HOH B 6 1006 72 HOH HOH . Z 6 HOH B 7 1007 68 HOH HOH . Z 6 HOH B 8 1008 69 HOH HOH . Z 6 HOH B 9 1009 29 HOH HOH . Z 6 HOH B 10 1010 80 HOH HOH . Z 6 HOH B 11 1011 88 HOH HOH . Z 6 HOH B 12 1012 87 HOH HOH . Z 6 HOH B 13 1013 75 HOH HOH . Z 6 HOH B 14 1014 58 HOH HOH . Z 6 HOH B 15 1015 85 HOH HOH . Z 6 HOH B 16 1016 40 HOH HOH . Z 6 HOH B 17 1017 57 HOH HOH . Z 6 HOH B 18 1018 59 HOH HOH . AA 6 HOH C 1 1001 6 HOH HOH . AA 6 HOH C 2 1002 1 HOH HOH . AA 6 HOH C 3 1003 32 HOH HOH . AA 6 HOH C 4 1004 21 HOH HOH . AA 6 HOH C 5 1005 3 HOH HOH . AA 6 HOH C 6 1006 56 HOH HOH . AA 6 HOH C 7 1007 27 HOH HOH . AA 6 HOH C 8 1008 73 HOH HOH . AA 6 HOH C 9 1009 50 HOH HOH . AA 6 HOH C 10 1010 7 HOH HOH . AA 6 HOH C 11 1011 15 HOH HOH . AA 6 HOH C 12 1012 66 HOH HOH . AA 6 HOH C 13 1013 2 HOH HOH . AA 6 HOH C 14 1014 24 HOH HOH . AA 6 HOH C 15 1015 9 HOH HOH . AA 6 HOH C 16 1016 49 HOH HOH . AA 6 HOH C 17 1017 16 HOH HOH . AA 6 HOH C 18 1018 81 HOH HOH . AA 6 HOH C 19 1019 76 HOH HOH . AA 6 HOH C 20 1020 77 HOH HOH . AA 6 HOH C 21 1021 13 HOH HOH . AA 6 HOH C 22 1022 52 HOH HOH . AA 6 HOH C 23 1023 74 HOH HOH . AA 6 HOH C 24 1024 53 HOH HOH . AA 6 HOH C 25 1025 41 HOH HOH . AA 6 HOH C 26 1026 60 HOH HOH . AA 6 HOH C 27 1027 61 HOH HOH . BA 6 HOH D 1 1001 18 HOH HOH . BA 6 HOH D 2 1002 65 HOH HOH . BA 6 HOH D 3 1003 33 HOH HOH . BA 6 HOH D 4 1004 8 HOH HOH . BA 6 HOH D 5 1005 26 HOH HOH . BA 6 HOH D 6 1006 46 HOH HOH . BA 6 HOH D 7 1007 44 HOH HOH . BA 6 HOH D 8 1008 36 HOH HOH . BA 6 HOH D 9 1009 12 HOH HOH . BA 6 HOH D 10 1010 82 HOH HOH . BA 6 HOH D 11 1011 71 HOH HOH . BA 6 HOH D 12 1012 28 HOH HOH . BA 6 HOH D 13 1013 70 HOH HOH . CA 6 HOH E 1 1001 83 HOH HOH . CA 6 HOH E 2 1002 48 HOH HOH . CA 6 HOH E 3 1003 51 HOH HOH . CA 6 HOH E 4 1004 84 HOH HOH . CA 6 HOH E 5 1005 31 HOH HOH . CA 6 HOH E 6 1006 22 HOH HOH . DA 6 HOH F 1 1001 35 HOH HOH . DA 6 HOH F 2 1002 34 HOH HOH . DA 6 HOH F 3 1003 30 HOH HOH . DA 6 HOH F 4 1004 23 HOH HOH . DA 6 HOH F 5 1005 38 HOH HOH . EA 6 HOH G 1 601 37 HOH HOH . FA 6 HOH H 1 601 54 HOH HOH . FA 6 HOH H 2 602 42 HOH HOH . GA 6 HOH J 1 501 47 HOH HOH . HA 6 HOH K 1 501 10 HOH HOH . HA 6 HOH K 2 502 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Q 4 79.544 83.588 93.59 1 74.87 ? C1 EDO 901 D 1 HETATM 2 O O1 EDO . . . Q 4 79.26 84.988 93.491 1 74.07 ? O1 EDO 901 D 1 HETATM 3 C C2 EDO . . . Q 4 81.05 83.369 93.505 1 79.37 ? C2 EDO 901 D 1 HETATM 4 O O2 EDO . . . Q 4 81.698 84.071 94.573 1 78.88 ? O2 EDO 901 D 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #