data_6R1E # _model_server_result.job_id '_TDoqzRepS50oyTuYTqtQg' _model_server_result.datetime_utc '2025-01-10 03:15:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":101}' # _entry.id 6R1E # _exptl.entry_id 6R1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R1E _cell.length_a 92.945 _cell.length_b 92.945 _cell.length_c 227.845 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -92.945 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -46.4725 -80.492731 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 M N N ? 3 R N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FOR 1 A FOR 14 1_555 A N MET 2 A MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale2 B C FOR 1 B FOR 14 1_555 B N MET 2 B MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale3 C C FOR 1 C FOR 14 1_555 C N MET 2 C MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale4 D C FOR 1 D FOR 14 1_555 D N MET 2 D MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6R1E _atom_sites.fract_transf_matrix[1][1] 0.010759 _atom_sites.fract_transf_matrix[1][2] 0.006212 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 101 101 FMN FMN . F 2 FMN A 1 102 101 FMN FMN . G 3 COA A 1 103 102 COA COA . H 4 CL A 1 104 4 CL CL . I 5 NA A 1 105 1 NA NA . J 6 SO4 A 1 106 3 SO4 SO4 . K 6 SO4 A 1 107 5 SO4 SO4 . L 2 FMN B 1 101 101 FMN FMN . M 3 COA B 1 102 102 COA COA . N 4 CL B 1 103 1 CL CL . O 5 NA B 1 104 3 NA NA . P 6 SO4 B 1 105 1 SO4 SO4 . Q 6 SO4 B 1 106 4 SO4 SO4 . R 3 COA C 1 101 102 COA COA . S 2 FMN C 1 102 101 FMN FMN . T 4 CL C 1 103 2 CL CL . U 5 NA C 1 104 2 NA NA . V 6 SO4 C 1 105 2 SO4 SO4 . W 6 SO4 C 1 106 6 SO4 SO4 . X 3 COA D 1 101 102 COA COA . Y 4 CL D 1 102 3 CL CL . Z 5 NA D 1 103 4 NA NA . AA 7 HOH A 1 201 75 HOH HOH . AA 7 HOH A 2 202 70 HOH HOH . AA 7 HOH A 3 203 37 HOH HOH . AA 7 HOH A 4 204 81 HOH HOH . AA 7 HOH A 5 205 67 HOH HOH . AA 7 HOH A 6 206 28 HOH HOH . AA 7 HOH A 7 207 72 HOH HOH . AA 7 HOH A 8 208 32 HOH HOH . AA 7 HOH A 9 209 24 HOH HOH . AA 7 HOH A 10 210 10 HOH HOH . AA 7 HOH A 11 211 52 HOH HOH . AA 7 HOH A 12 212 44 HOH HOH . AA 7 HOH A 13 213 80 HOH HOH . AA 7 HOH A 14 214 64 HOH HOH . AA 7 HOH A 15 215 74 HOH HOH . AA 7 HOH A 16 216 22 HOH HOH . AA 7 HOH A 17 217 29 HOH HOH . AA 7 HOH A 18 218 69 HOH HOH . AA 7 HOH A 19 219 51 HOH HOH . AA 7 HOH A 20 220 56 HOH HOH . AA 7 HOH A 21 221 39 HOH HOH . AA 7 HOH A 22 222 65 HOH HOH . BA 7 HOH B 1 201 82 HOH HOH . BA 7 HOH B 2 202 76 HOH HOH . BA 7 HOH B 3 203 34 HOH HOH . BA 7 HOH B 4 204 40 HOH HOH . BA 7 HOH B 5 205 20 HOH HOH . BA 7 HOH B 6 206 8 HOH HOH . BA 7 HOH B 7 207 21 HOH HOH . BA 7 HOH B 8 208 2 HOH HOH . BA 7 HOH B 9 209 19 HOH HOH . BA 7 HOH B 10 210 85 HOH HOH . BA 7 HOH B 11 211 45 HOH HOH . BA 7 HOH B 12 212 18 HOH HOH . BA 7 HOH B 13 213 5 HOH HOH . BA 7 HOH B 14 214 86 HOH HOH . BA 7 HOH B 15 215 16 HOH HOH . BA 7 HOH B 16 216 26 HOH HOH . BA 7 HOH B 17 217 88 HOH HOH . BA 7 HOH B 18 218 58 HOH HOH . BA 7 HOH B 19 219 33 HOH HOH . BA 7 HOH B 20 220 48 HOH HOH . BA 7 HOH B 21 221 66 HOH HOH . BA 7 HOH B 22 222 63 HOH HOH . BA 7 HOH B 23 223 53 HOH HOH . CA 7 HOH C 1 201 79 HOH HOH . CA 7 HOH C 2 202 77 HOH HOH . CA 7 HOH C 3 203 38 HOH HOH . CA 7 HOH C 4 204 59 HOH HOH . CA 7 HOH C 5 205 35 HOH HOH . CA 7 HOH C 6 206 25 HOH HOH . CA 7 HOH C 7 207 15 HOH HOH . CA 7 HOH C 8 208 9 HOH HOH . CA 7 HOH C 9 209 17 HOH HOH . CA 7 HOH C 10 210 47 HOH HOH . CA 7 HOH C 11 211 90 HOH HOH . CA 7 HOH C 12 212 4 HOH HOH . CA 7 HOH C 13 213 31 HOH HOH . CA 7 HOH C 14 214 89 HOH HOH . CA 7 HOH C 15 215 14 HOH HOH . CA 7 HOH C 16 216 87 HOH HOH . CA 7 HOH C 17 217 27 HOH HOH . CA 7 HOH C 18 218 62 HOH HOH . CA 7 HOH C 19 219 36 HOH HOH . CA 7 HOH C 20 220 41 HOH HOH . CA 7 HOH C 21 221 60 HOH HOH . CA 7 HOH C 22 222 61 HOH HOH . DA 7 HOH D 1 201 43 HOH HOH . DA 7 HOH D 2 202 83 HOH HOH . DA 7 HOH D 3 203 68 HOH HOH . DA 7 HOH D 4 204 71 HOH HOH . DA 7 HOH D 5 205 78 HOH HOH . DA 7 HOH D 6 206 55 HOH HOH . DA 7 HOH D 7 207 54 HOH HOH . DA 7 HOH D 8 208 1 HOH HOH . DA 7 HOH D 9 209 13 HOH HOH . DA 7 HOH D 10 210 30 HOH HOH . DA 7 HOH D 11 211 3 HOH HOH . DA 7 HOH D 12 212 7 HOH HOH . DA 7 HOH D 13 213 11 HOH HOH . DA 7 HOH D 14 214 42 HOH HOH . DA 7 HOH D 15 215 6 HOH HOH . DA 7 HOH D 16 216 23 HOH HOH . DA 7 HOH D 17 217 84 HOH HOH . DA 7 HOH D 18 218 73 HOH HOH . DA 7 HOH D 19 219 12 HOH HOH . DA 7 HOH D 20 220 46 HOH HOH . DA 7 HOH D 21 221 57 HOH HOH . DA 7 HOH D 22 222 50 HOH HOH . DA 7 HOH D 23 223 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . R 3 -28.699 -48.725 -31.947 1 56.14 ? N1A COA 101 C 1 HETATM 2 C C2A COA . . . R 3 -27.431 -48.709 -31.455 1 52.36 ? C2A COA 101 C 1 HETATM 3 N N3A COA . . . R 3 -26.436 -48.065 -32.083 1 51.34 ? N3A COA 101 C 1 HETATM 4 C C4A COA . . . R 3 -26.672 -47.405 -33.263 1 53.89 ? C4A COA 101 C 1 HETATM 5 C C5A COA . . . R 3 -28.028 -47.379 -33.852 1 53.29 ? C5A COA 101 C 1 HETATM 6 C C6A COA . . . R 3 -29.078 -48.104 -33.102 1 51.85 ? C6A COA 101 C 1 HETATM 7 N N6A COA . . . R 3 -30.352 -48.137 -33.568 1 48.86 ? N6A COA 101 C 1 HETATM 8 N N7A COA . . . R 3 -27.968 -46.656 -34.987 1 50.01 ? N7A COA 101 C 1 HETATM 9 C C8A COA . . . R 3 -26.686 -46.246 -35.124 1 51.58 ? C8A COA 101 C 1 HETATM 10 N N9A COA . . . R 3 -25.918 -46.684 -34.097 1 52.82 ? N9A COA 101 C 1 HETATM 11 C C1B COA . . . R 3 -24.46 -46.45 -33.88 1 53.27 ? C1B COA 101 C 1 HETATM 12 C C2B COA . . . R 3 -23.611 -46.646 -35.139 1 51.77 ? C2B COA 101 C 1 HETATM 13 O O2B COA . . . R 3 -23.346 -48.023 -35.4 1 50.08 ? O2B COA 101 C 1 HETATM 14 C C3B COA . . . R 3 -22.383 -45.855 -34.752 1 51.47 ? C3B COA 101 C 1 HETATM 15 O O3B COA . . . R 3 -21.578 -46.549 -33.81 0.5 44.02 ? O3B COA 101 C 1 HETATM 16 P P3B COA . . . R 3 -20.044 -46.82 -34.153 0.5 41.68 ? P3B COA 101 C 1 HETATM 17 O O7A COA . . . R 3 -19.427 -45.443 -34.119 0.5 39.36 ? O7A COA 101 C 1 HETATM 18 O O8A COA . . . R 3 -20.1 -47.464 -35.517 0.5 39.42 ? O8A COA 101 C 1 HETATM 19 O O9A COA . . . R 3 -19.622 -47.75 -33.045 0.5 42.44 ? O9A COA 101 C 1 HETATM 20 C C4B COA . . . R 3 -22.982 -44.653 -34.057 1 55.08 ? C4B COA 101 C 1 HETATM 21 O O4B COA . . . R 3 -24.174 -45.117 -33.409 1 53.79 ? O4B COA 101 C 1 HETATM 22 C C5B COA . . . R 3 -23.334 -43.58 -35.074 1 58.36 ? C5B COA 101 C 1 HETATM 23 O O5B COA . . . R 3 -23.557 -42.37 -34.371 1 65.64 ? O5B COA 101 C 1 HETATM 24 P P1A COA . . . R 3 -22.376 -41.3 -34.087 1 66.02 ? P1A COA 101 C 1 HETATM 25 O O1A COA . . . R 3 -21.036 -41.918 -34.42 1 68.35 ? O1A COA 101 C 1 HETATM 26 O O2A COA . . . R 3 -22.669 -40.776 -32.694 1 63.66 ? O2A COA 101 C 1 HETATM 27 O O3A COA . . . R 3 -22.547 -40.148 -35.211 1 63.62 ? O3A COA 101 C 1 HETATM 28 P P2A COA . . . R 3 -23.727 -39.054 -35.376 1 61.09 ? P2A COA 101 C 1 HETATM 29 O O4A COA . . . R 3 -23.425 -38.191 -36.591 1 64.91 ? O4A COA 101 C 1 HETATM 30 O O5A COA . . . R 3 -25.068 -39.749 -35.39 1 61.69 ? O5A COA 101 C 1 HETATM 31 O O6A COA . . . R 3 -23.622 -38.11 -34.072 1 60.61 ? O6A COA 101 C 1 HETATM 32 C CBP COA . . . R 3 -22.754 -36.826 -32.239 1 58.1 ? CBP COA 101 C 1 HETATM 33 C CCP COA . . . R 3 -22.416 -37.614 -33.5 1 57.27 ? CCP COA 101 C 1 HETATM 34 C CDP COA . . . R 3 -21.493 -36.172 -31.685 1 59.62 ? CDP COA 101 C 1 HETATM 35 C CEP COA . . . R 3 -23.731 -35.735 -32.63 1 60.6 ? CEP COA 101 C 1 HETATM 36 C CAP COA . . . R 3 -23.383 -37.749 -31.181 1 57.75 ? CAP COA 101 C 1 HETATM 37 O OAP COA . . . R 3 -22.392 -38.724 -30.835 1 55.88 ? OAP COA 101 C 1 HETATM 38 C C9P COA . . . R 3 -23.895 -37.041 -29.924 1 61.74 ? C9P COA 101 C 1 HETATM 39 O O9P COA . . . R 3 -25.007 -36.514 -29.926 1 55.67 ? O9P COA 101 C 1 HETATM 40 N N8P COA . . . R 3 -23.09 -37.036 -28.839 1 63.14 ? N8P COA 101 C 1 HETATM 41 C C7P COA . . . R 3 -23.445 -36.424 -27.559 1 61.97 ? C7P COA 101 C 1 HETATM 42 C C6P COA . . . R 3 -22.385 -35.432 -27.093 1 59.16 ? C6P COA 101 C 1 HETATM 43 C C5P COA . . . R 3 -22.673 -34.862 -25.711 1 60.22 ? C5P COA 101 C 1 HETATM 44 O O5P COA . . . R 3 -23.792 -34.849 -25.22 1 58.44 ? O5P COA 101 C 1 HETATM 45 N N4P COA . . . R 3 -21.614 -34.365 -25.071 1 60.28 ? N4P COA 101 C 1 HETATM 46 C C3P COA . . . R 3 -21.699 -33.798 -23.752 1 58.83 ? C3P COA 101 C 1 HETATM 47 C C2P COA . . . R 3 -20.473 -32.975 -23.411 1 60.11 ? C2P COA 101 C 1 HETATM 48 S S1P COA . . . R 3 -20.853 -31.955 -21.956 1 64.53 ? S1P COA 101 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #