data_6R1E # _model_server_result.job_id WbDxDN4eAJPWa2TN6nMuUw _model_server_result.datetime_utc '2025-01-10 03:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":105}' # _entry.id 6R1E # _exptl.entry_id 6R1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R1E _cell.length_a 92.945 _cell.length_b 92.945 _cell.length_c 227.845 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -92.945 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -46.4725 -80.492731 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 O N N ? 5 U N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FOR 1 A FOR 14 1_555 A N MET 2 A MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale2 B C FOR 1 B FOR 14 1_555 B N MET 2 B MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale3 C C FOR 1 C FOR 14 1_555 C N MET 2 C MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale4 D C FOR 1 D FOR 14 1_555 D N MET 2 D MET 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6R1E _atom_sites.fract_transf_matrix[1][1] 0.010759 _atom_sites.fract_transf_matrix[1][2] 0.006212 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 101 101 FMN FMN . F 2 FMN A 1 102 101 FMN FMN . G 3 COA A 1 103 102 COA COA . H 4 CL A 1 104 4 CL CL . I 5 NA A 1 105 1 NA NA . J 6 SO4 A 1 106 3 SO4 SO4 . K 6 SO4 A 1 107 5 SO4 SO4 . L 2 FMN B 1 101 101 FMN FMN . M 3 COA B 1 102 102 COA COA . N 4 CL B 1 103 1 CL CL . O 5 NA B 1 104 3 NA NA . P 6 SO4 B 1 105 1 SO4 SO4 . Q 6 SO4 B 1 106 4 SO4 SO4 . R 3 COA C 1 101 102 COA COA . S 2 FMN C 1 102 101 FMN FMN . T 4 CL C 1 103 2 CL CL . U 5 NA C 1 104 2 NA NA . V 6 SO4 C 1 105 2 SO4 SO4 . W 6 SO4 C 1 106 6 SO4 SO4 . X 3 COA D 1 101 102 COA COA . Y 4 CL D 1 102 3 CL CL . Z 5 NA D 1 103 4 NA NA . AA 7 HOH A 1 201 75 HOH HOH . AA 7 HOH A 2 202 70 HOH HOH . AA 7 HOH A 3 203 37 HOH HOH . AA 7 HOH A 4 204 81 HOH HOH . AA 7 HOH A 5 205 67 HOH HOH . AA 7 HOH A 6 206 28 HOH HOH . AA 7 HOH A 7 207 72 HOH HOH . AA 7 HOH A 8 208 32 HOH HOH . AA 7 HOH A 9 209 24 HOH HOH . AA 7 HOH A 10 210 10 HOH HOH . AA 7 HOH A 11 211 52 HOH HOH . AA 7 HOH A 12 212 44 HOH HOH . AA 7 HOH A 13 213 80 HOH HOH . AA 7 HOH A 14 214 64 HOH HOH . AA 7 HOH A 15 215 74 HOH HOH . AA 7 HOH A 16 216 22 HOH HOH . AA 7 HOH A 17 217 29 HOH HOH . AA 7 HOH A 18 218 69 HOH HOH . AA 7 HOH A 19 219 51 HOH HOH . AA 7 HOH A 20 220 56 HOH HOH . AA 7 HOH A 21 221 39 HOH HOH . AA 7 HOH A 22 222 65 HOH HOH . BA 7 HOH B 1 201 82 HOH HOH . BA 7 HOH B 2 202 76 HOH HOH . BA 7 HOH B 3 203 34 HOH HOH . BA 7 HOH B 4 204 40 HOH HOH . BA 7 HOH B 5 205 20 HOH HOH . BA 7 HOH B 6 206 8 HOH HOH . BA 7 HOH B 7 207 21 HOH HOH . BA 7 HOH B 8 208 2 HOH HOH . BA 7 HOH B 9 209 19 HOH HOH . BA 7 HOH B 10 210 85 HOH HOH . BA 7 HOH B 11 211 45 HOH HOH . BA 7 HOH B 12 212 18 HOH HOH . BA 7 HOH B 13 213 5 HOH HOH . BA 7 HOH B 14 214 86 HOH HOH . BA 7 HOH B 15 215 16 HOH HOH . BA 7 HOH B 16 216 26 HOH HOH . BA 7 HOH B 17 217 88 HOH HOH . BA 7 HOH B 18 218 58 HOH HOH . BA 7 HOH B 19 219 33 HOH HOH . BA 7 HOH B 20 220 48 HOH HOH . BA 7 HOH B 21 221 66 HOH HOH . BA 7 HOH B 22 222 63 HOH HOH . BA 7 HOH B 23 223 53 HOH HOH . CA 7 HOH C 1 201 79 HOH HOH . CA 7 HOH C 2 202 77 HOH HOH . CA 7 HOH C 3 203 38 HOH HOH . CA 7 HOH C 4 204 59 HOH HOH . CA 7 HOH C 5 205 35 HOH HOH . CA 7 HOH C 6 206 25 HOH HOH . CA 7 HOH C 7 207 15 HOH HOH . CA 7 HOH C 8 208 9 HOH HOH . CA 7 HOH C 9 209 17 HOH HOH . CA 7 HOH C 10 210 47 HOH HOH . CA 7 HOH C 11 211 90 HOH HOH . CA 7 HOH C 12 212 4 HOH HOH . CA 7 HOH C 13 213 31 HOH HOH . CA 7 HOH C 14 214 89 HOH HOH . CA 7 HOH C 15 215 14 HOH HOH . CA 7 HOH C 16 216 87 HOH HOH . CA 7 HOH C 17 217 27 HOH HOH . CA 7 HOH C 18 218 62 HOH HOH . CA 7 HOH C 19 219 36 HOH HOH . CA 7 HOH C 20 220 41 HOH HOH . CA 7 HOH C 21 221 60 HOH HOH . CA 7 HOH C 22 222 61 HOH HOH . DA 7 HOH D 1 201 43 HOH HOH . DA 7 HOH D 2 202 83 HOH HOH . DA 7 HOH D 3 203 68 HOH HOH . DA 7 HOH D 4 204 71 HOH HOH . DA 7 HOH D 5 205 78 HOH HOH . DA 7 HOH D 6 206 55 HOH HOH . DA 7 HOH D 7 207 54 HOH HOH . DA 7 HOH D 8 208 1 HOH HOH . DA 7 HOH D 9 209 13 HOH HOH . DA 7 HOH D 10 210 30 HOH HOH . DA 7 HOH D 11 211 3 HOH HOH . DA 7 HOH D 12 212 7 HOH HOH . DA 7 HOH D 13 213 11 HOH HOH . DA 7 HOH D 14 214 42 HOH HOH . DA 7 HOH D 15 215 6 HOH HOH . DA 7 HOH D 16 216 23 HOH HOH . DA 7 HOH D 17 217 84 HOH HOH . DA 7 HOH D 18 218 73 HOH HOH . DA 7 HOH D 19 219 12 HOH HOH . DA 7 HOH D 20 220 46 HOH HOH . DA 7 HOH D 21 221 57 HOH HOH . DA 7 HOH D 22 222 50 HOH HOH . DA 7 HOH D 23 223 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x -26.145 _atom_site.Cartn_y -32.397 _atom_site.Cartn_z 6.632 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #