data_6R1F # _model_server_result.job_id A9qImSdEWf4-wCMSGCmLSQ _model_server_result.datetime_utc '2024-11-06 00:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6R1F # _exptl.entry_id 6R1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R1F _cell.length_a 86.5 _cell.length_b 157.26 _cell.length_c 78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 484 A CYS 484 1_555 A SG CYS 491 A CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 B FE FE . A FE 801 1_555 C O3 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 B FE FE . A FE 801 1_555 C O1 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 B FE FE . A FE 801 1_555 C O2 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc4 B FE FE . A FE 801 1_555 C O6 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 B FE FE . A FE 801 1_555 C O4 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 B FE FE . A FE 801 1_555 C O5 EB4 . A EB4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C30 H27 N3 O15' _chem_comp.formula_weight 669.546 _chem_comp.id EB4 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Enterobactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 EB4 sing 83 n n O6 HO6 EB4 sing 84 n n O4 HO4 EB4 sing 85 n n O5 C5 EB4 sing 86 n n O5 HO5 EB4 sing 87 n n N1 C22 EB4 sing 88 n n N1 HN1 EB4 sing 89 n n C5 C2 EB4 doub 90 n y C5 C8 EB4 sing 91 n y C4 O4 EB4 sing 92 n n C4 C1 EB4 sing 93 n y C1 O1 EB4 sing 94 n n C2 C17 EB4 sing 95 n y C6 C3 EB4 sing 96 n y C8 C11 EB4 doub 97 n y C8 H8 EB4 sing 98 n n N2 C23 EB4 sing 99 n n N2 HN2 EB4 sing 100 n n C9 C6 EB4 doub 101 n y C9 C12 EB4 sing 102 n y C9 H9 EB4 sing 103 n n C10 C7 EB4 sing 104 n y C10 C13 EB4 doub 105 n y C10 H10 EB4 sing 106 n n O3 HO3 EB4 sing 107 n n N3 C21 EB4 sing 108 n n N3 C24 EB4 sing 109 n n N3 HN3 EB4 sing 110 n n C16 C1 EB4 doub 111 n y C16 C19 EB4 sing 112 n n C7 C4 EB4 doub 113 n y C7 H7 EB4 sing 114 n n C3 O3 EB4 sing 115 n n C3 C18 EB4 doub 116 n y C11 C14 EB4 sing 117 n y C11 H11 EB4 sing 118 n n O1 HO1 EB4 sing 119 n n O2 C2 EB4 sing 120 n n O2 HO2 EB4 sing 121 n n C12 C15 EB4 doub 122 n y C12 H12 EB4 sing 123 n n C15 C18 EB4 sing 124 n y C15 H15 EB4 sing 125 n n C14 H14 EB4 sing 126 n n C13 C16 EB4 sing 127 n y C13 H13 EB4 sing 128 n n O7 C19 EB4 doub 129 n n C19 N1 EB4 sing 130 n n C22 C25 EB4 sing 131 n n C22 C28 EB4 sing 132 n n C22 H22 EB4 sing 133 n n C25 O15 EB4 sing 134 n n O10 C25 EB4 doub 135 n n O15 C30 EB4 sing 136 n n C30 C24 EB4 sing 137 n n C30 H30 EB4 sing 138 n n C30 H30A EB4 sing 139 n n C24 H24 EB4 sing 140 n n C21 O9 EB4 doub 141 n n C18 C21 EB4 sing 142 n n C27 C24 EB4 sing 143 n n C27 O14 EB4 sing 144 n n O12 C27 EB4 doub 145 n n C28 H28 EB4 sing 146 n n C28 H28A EB4 sing 147 n n O13 C28 EB4 sing 148 n n O13 C26 EB4 sing 149 n n C26 C23 EB4 sing 150 n n O11 C26 EB4 doub 151 n n C23 C29 EB4 sing 152 n n C23 H23 EB4 sing 153 n n C29 O14 EB4 sing 154 n n C29 H29 EB4 sing 155 n n C29 H29A EB4 sing 156 n n C20 N2 EB4 sing 157 n n O8 C20 EB4 doub 158 n n C17 C14 EB4 doub 159 n y C17 C20 EB4 sing 160 n n # _atom_sites.entry_id 6R1F _atom_sites.fract_transf_matrix[1][1] 0.011561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 801 801 FE FE . C 3 EB4 A 1 802 802 EB4 EB4 . D 4 HOH A 1 901 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 EB4 . . . C 3 -85.614 29.859 124.294 1 153.43 ? O6 EB4 802 A 1 HETATM 2 O O4 EB4 . . . C 3 -85.722 29.934 126.557 1 133.5 ? O4 EB4 802 A 1 HETATM 3 O O5 EB4 . . . C 3 -85.729 32.433 125.814 1 125.89 ? O5 EB4 802 A 1 HETATM 4 N N1 EB4 . . . C 3 -90.64 29.788 127.72 1 138.33 ? N1 EB4 802 A 1 HETATM 5 C C5 EB4 . . . C 3 -86.42 33.606 125.753 1 114.11 ? C5 EB4 802 A 1 HETATM 6 C C4 EB4 . . . C 3 -86.418 29.418 127.615 1 146.97 ? C4 EB4 802 A 1 HETATM 7 C C1 EB4 . . . C 3 -87.806 29.563 127.64 1 145.23 ? C1 EB4 802 A 1 HETATM 8 C C2 EB4 . . . C 3 -87.814 33.59 125.587 1 119 ? C2 EB4 802 A 1 HETATM 9 C C6 EB4 . . . C 3 -86.224 29.423 123.15 1 157.22 ? C6 EB4 802 A 1 HETATM 10 C C8 EB4 . . . C 3 -85.752 34.808 125.853 1 122.01 ? C8 EB4 802 A 1 HETATM 11 N N2 EB4 . . . C 3 -90.609 33.636 125.027 1 121.74 ? N2 EB4 802 A 1 HETATM 12 C C9 EB4 . . . C 3 -85.489 29.083 122.03 1 150.79 ? C9 EB4 802 A 1 HETATM 13 C C10 EB4 . . . C 3 -86.511 28.235 129.704 1 143.54 ? C10 EB4 802 A 1 HETATM 14 O O3 EB4 . . . C 3 -88.28 29.671 124.249 1 169.05 ? O3 EB4 802 A 1 HETATM 15 N N3 EB4 . . . C 3 -90.454 29.259 122.952 1 124.72 ? N3 EB4 802 A 1 HETATM 16 C C16 EB4 . . . C 3 -88.55 29.044 128.706 1 141.93 ? C16 EB4 802 A 1 HETATM 17 C C7 EB4 . . . C 3 -85.775 28.755 128.647 1 152.8 ? C7 EB4 802 A 1 HETATM 18 C C3 EB4 . . . C 3 -87.62 29.322 123.123 1 158.51 ? C3 EB4 802 A 1 HETATM 19 C C11 EB4 . . . C 3 -86.46 36.005 125.789 1 119.31 ? C11 EB4 802 A 1 HETATM 20 O O1 EB4 . . . C 3 -88.373 30.218 126.604 1 154.01 ? O1 EB4 802 A 1 HETATM 21 O O2 EB4 . . . C 3 -88.414 32.38 125.494 1 122.69 ? O2 EB4 802 A 1 HETATM 22 C C12 EB4 . . . C 3 -86.137 28.642 120.881 1 151.37 ? C12 EB4 802 A 1 HETATM 23 C C15 EB4 . . . C 3 -87.498 28.543 120.855 1 145.95 ? C15 EB4 802 A 1 HETATM 24 C C14 EB4 . . . C 3 -87.816 35.993 125.628 1 109.31 ? C14 EB4 802 A 1 HETATM 25 C C13 EB4 . . . C 3 -87.866 28.378 129.728 1 140.96 ? C13 EB4 802 A 1 HETATM 26 O O7 EB4 . . . C 3 -90.664 28.714 129.696 1 138.48 ? O7 EB4 802 A 1 HETATM 27 C C19 EB4 . . . C 3 -90.035 29.177 128.75 1 137.65 ? C19 EB4 802 A 1 HETATM 28 C C22 EB4 . . . C 3 -92.078 30.038 127.72 1 142 ? C22 EB4 802 A 1 HETATM 29 C C25 EB4 . . . C 3 -92.754 29.549 126.436 1 151.82 ? C25 EB4 802 A 1 HETATM 30 O O10 EB4 . . . C 3 -93.955 29.452 126.307 1 138.11 ? O10 EB4 802 A 1 HETATM 31 O O15 EB4 . . . C 3 -91.865 29.253 125.481 1 168.13 ? O15 EB4 802 A 1 HETATM 32 C C30 EB4 . . . C 3 -92.35 28.491 124.335 1 150.87 ? C30 EB4 802 A 1 HETATM 33 C C24 EB4 . . . C 3 -91.906 29.153 123.028 1 135.28 ? C24 EB4 802 A 1 HETATM 34 C C21 EB4 . . . C 3 -89.762 28.758 121.923 1 129.58 ? C21 EB4 802 A 1 HETATM 35 C C18 EB4 . . . C 3 -88.276 28.879 121.967 1 142.82 ? C18 EB4 802 A 1 HETATM 36 O O9 EB4 . . . C 3 -90.307 28.208 120.973 1 136.76 ? O9 EB4 802 A 1 HETATM 37 C C27 EB4 . . . C 3 -92.566 30.525 122.892 1 146.12 ? C27 EB4 802 A 1 HETATM 38 O O12 EB4 . . . C 3 -93.556 30.736 122.236 1 146.12 ? O12 EB4 802 A 1 HETATM 39 C C28 EB4 . . . C 3 -92.376 31.518 127.913 1 151.21 ? C28 EB4 802 A 1 HETATM 40 O O13 EB4 . . . C 3 -91.847 32.267 126.786 1 155.42 ? O13 EB4 802 A 1 HETATM 41 C C26 EB4 . . . C 3 -92.737 32.814 125.96 1 147.3 ? C26 EB4 802 A 1 HETATM 42 O O11 EB4 . . . C 3 -93.935 32.735 126.091 1 143.99 ? O11 EB4 802 A 1 HETATM 43 C C23 EB4 . . . C 3 -92.053 33.543 124.811 1 135.16 ? C23 EB4 802 A 1 HETATM 44 C C29 EB4 . . . C 3 -92.386 32.824 123.505 1 140.41 ? C29 EB4 802 A 1 HETATM 45 O O14 EB4 . . . C 3 -91.909 31.452 123.592 1 153.85 ? O14 EB4 802 A 1 HETATM 46 C C20 EB4 . . . C 3 -90.016 34.796 125.348 1 118.53 ? C20 EB4 802 A 1 HETATM 47 O O8 EB4 . . . C 3 -90.652 35.842 125.491 1 117.49 ? O8 EB4 802 A 1 HETATM 48 C C17 EB4 . . . C 3 -88.53 34.792 125.524 1 114.33 ? C17 EB4 802 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #