data_6R1K
#
_model_server_result.job_id            xnq9Jk3VVSbNWi8W2hMR9Q 
_model_server_result.datetime_utc      '2024-12-04 16:04:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    6R1K 
#
_exptl.entry_id    6R1K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.544 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-2,4,6-tris(chloranyl)benzamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6R1K 
_cell.length_a            56.23 
_cell.length_b            60.08 
_cell.length_c            88.52 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,L 1 1 
B,G,H,I,M 2 1 
C,J,K,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
#
_chem_comp.formula           'C11 H7 Cl3 N2 O3' 
_chem_comp.formula_weight    321.544 
_chem_comp.id                JPB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-2,4,6-tris(chloranyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C7 JPB sing 173 n n 
C8 C7 JPB doub 174 n y 
C8 C9 JPB sing 175 n y 
CL2 C9 JPB sing 176 n n 
C7 C6 JPB sing 177 n y 
C9 C10 JPB doub 178 n y 
O1 C1 JPB doub 179 n n 
N1 C1 JPB sing 180 n n 
N1 C2 JPB sing 181 n n 
C1 C4 JPB sing 182 n n 
C6 C5 JPB sing 183 n n 
C6 C11 JPB doub 184 n y 
O2 C2 JPB doub 185 n n 
C2 C3 JPB sing 186 n n 
N2 C5 JPB sing 187 n n 
N2 C4 JPB sing 188 n n 
C10 C11 JPB sing 189 n y 
C5 O3 JPB doub 190 n n 
C4 C3 JPB sing 191 n n 
C11 CL3 JPB sing 192 n n 
C4 H1 JPB sing 193 n n 
C8 H2 JPB sing 194 n n 
C10 H3 JPB sing 195 n n 
N1 H4 JPB sing 196 n n 
N2 H5 JPB sing 197 n n 
C3 H6 JPB sing 198 n n 
C3 H7 JPB sing 199 n n 
#
_atom_sites.entry_id                     6R1K 
_atom_sites.fract_transf_matrix[1][1]    0.017784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016644 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011297 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 201 150 ZN ZN . 
E 3 JPB A 1 202 151 JPB DRG . 
F 4 PO4 A 1 203 160 PO4 PO4 . 
G 2 ZN B 1 201 150 ZN ZN . 
H 3 JPB B 1 202 151 JPB DRG . 
I 3 JPB B 1 203 152 JPB DRG . 
J 2 ZN C 1 201 150 ZN ZN . 
K 3 JPB C 1 202 151 JPB DRG . 
L 5 HOH A 1 301 34 HOH HOH . 
L 5 HOH A 2 302 90 HOH HOH . 
L 5 HOH A 3 303 106 HOH HOH . 
L 5 HOH A 4 304 72 HOH HOH . 
L 5 HOH A 5 305 97 HOH HOH . 
L 5 HOH A 6 306 26 HOH HOH . 
L 5 HOH A 7 307 33 HOH HOH . 
L 5 HOH A 8 308 94 HOH HOH . 
L 5 HOH A 9 309 22 HOH HOH . 
L 5 HOH A 10 310 88 HOH HOH . 
L 5 HOH A 11 311 108 HOH HOH . 
L 5 HOH A 12 312 104 HOH HOH . 
L 5 HOH A 13 313 87 HOH HOH . 
L 5 HOH A 14 314 114 HOH HOH . 
L 5 HOH A 15 315 30 HOH HOH . 
L 5 HOH A 16 316 32 HOH HOH . 
L 5 HOH A 17 317 36 HOH HOH . 
L 5 HOH A 18 318 105 HOH HOH . 
L 5 HOH A 19 319 69 HOH HOH . 
L 5 HOH A 20 320 23 HOH HOH . 
L 5 HOH A 21 321 111 HOH HOH . 
L 5 HOH A 22 322 21 HOH HOH . 
L 5 HOH A 23 323 37 HOH HOH . 
L 5 HOH A 24 324 24 HOH HOH . 
L 5 HOH A 25 325 89 HOH HOH . 
L 5 HOH A 26 326 35 HOH HOH . 
L 5 HOH A 27 327 76 HOH HOH . 
L 5 HOH A 28 328 101 HOH HOH . 
L 5 HOH A 29 329 31 HOH HOH . 
L 5 HOH A 30 330 71 HOH HOH . 
L 5 HOH A 31 331 98 HOH HOH . 
L 5 HOH A 32 332 92 HOH HOH . 
L 5 HOH A 33 333 65 HOH HOH . 
L 5 HOH A 34 334 109 HOH HOH . 
L 5 HOH A 35 335 103 HOH HOH . 
L 5 HOH A 36 336 124 HOH HOH . 
L 5 HOH A 37 337 77 HOH HOH . 
L 5 HOH A 38 338 78 HOH HOH . 
L 5 HOH A 39 339 112 HOH HOH . 
L 5 HOH A 40 340 107 HOH HOH . 
L 5 HOH A 41 341 25 HOH HOH . 
L 5 HOH A 42 342 96 HOH HOH . 
L 5 HOH A 43 343 110 HOH HOH . 
M 5 HOH B 1 301 43 HOH HOH . 
M 5 HOH B 2 302 39 HOH HOH . 
M 5 HOH B 3 303 20 HOH HOH . 
M 5 HOH B 4 304 44 HOH HOH . 
M 5 HOH B 5 305 7 HOH HOH . 
M 5 HOH B 6 306 41 HOH HOH . 
M 5 HOH B 7 307 67 HOH HOH . 
M 5 HOH B 8 308 8 HOH HOH . 
M 5 HOH B 9 309 13 HOH HOH . 
M 5 HOH B 10 310 28 HOH HOH . 
M 5 HOH B 11 311 79 HOH HOH . 
M 5 HOH B 12 312 38 HOH HOH . 
M 5 HOH B 13 313 62 HOH HOH . 
M 5 HOH B 14 314 9 HOH HOH . 
M 5 HOH B 15 315 68 HOH HOH . 
M 5 HOH B 16 316 18 HOH HOH . 
M 5 HOH B 17 317 17 HOH HOH . 
M 5 HOH B 18 318 4 HOH HOH . 
M 5 HOH B 19 319 120 HOH HOH . 
M 5 HOH B 20 320 81 HOH HOH . 
M 5 HOH B 21 321 19 HOH HOH . 
M 5 HOH B 22 322 12 HOH HOH . 
M 5 HOH B 23 323 42 HOH HOH . 
M 5 HOH B 24 324 45 HOH HOH . 
M 5 HOH B 25 325 64 HOH HOH . 
M 5 HOH B 26 326 60 HOH HOH . 
M 5 HOH B 27 327 16 HOH HOH . 
M 5 HOH B 28 328 14 HOH HOH . 
M 5 HOH B 29 329 1 HOH HOH . 
M 5 HOH B 30 330 10 HOH HOH . 
M 5 HOH B 31 331 6 HOH HOH . 
M 5 HOH B 32 332 46 HOH HOH . 
M 5 HOH B 33 333 58 HOH HOH . 
M 5 HOH B 34 334 40 HOH HOH . 
M 5 HOH B 35 335 121 HOH HOH . 
M 5 HOH B 36 336 63 HOH HOH . 
M 5 HOH B 37 337 85 HOH HOH . 
M 5 HOH B 38 338 113 HOH HOH . 
M 5 HOH B 39 339 118 HOH HOH . 
M 5 HOH B 40 340 91 HOH HOH . 
M 5 HOH B 41 341 15 HOH HOH . 
M 5 HOH B 42 342 61 HOH HOH . 
M 5 HOH B 43 343 3 HOH HOH . 
M 5 HOH B 44 344 119 HOH HOH . 
M 5 HOH B 45 345 75 HOH HOH . 
M 5 HOH B 46 346 116 HOH HOH . 
M 5 HOH B 47 347 11 HOH HOH . 
M 5 HOH B 48 348 95 HOH HOH . 
M 5 HOH B 49 349 115 HOH HOH . 
M 5 HOH B 50 350 59 HOH HOH . 
M 5 HOH B 51 351 84 HOH HOH . 
M 5 HOH B 52 352 123 HOH HOH . 
M 5 HOH B 53 353 100 HOH HOH . 
M 5 HOH B 54 354 5 HOH HOH . 
M 5 HOH B 55 355 66 HOH HOH . 
N 5 HOH C 1 301 53 HOH HOH . 
N 5 HOH C 2 302 48 HOH HOH . 
N 5 HOH C 3 303 57 HOH HOH . 
N 5 HOH C 4 304 80 HOH HOH . 
N 5 HOH C 5 305 54 HOH HOH . 
N 5 HOH C 6 306 50 HOH HOH . 
N 5 HOH C 7 307 55 HOH HOH . 
N 5 HOH C 8 308 51 HOH HOH . 
N 5 HOH C 9 309 49 HOH HOH . 
N 5 HOH C 10 310 52 HOH HOH . 
N 5 HOH C 11 311 29 HOH HOH . 
N 5 HOH C 12 312 27 HOH HOH . 
N 5 HOH C 13 313 2 HOH HOH . 
N 5 HOH C 14 314 56 HOH HOH . 
N 5 HOH C 15 315 86 HOH HOH . 
N 5 HOH C 16 316 47 HOH HOH . 
N 5 HOH C 17 317 83 HOH HOH . 
N 5 HOH C 18 318 93 HOH HOH . 
N 5 HOH C 19 319 122 HOH HOH . 
N 5 HOH C 20 320 70 HOH HOH . 
N 5 HOH C 21 321 99 HOH HOH . 
N 5 HOH C 22 322 117 HOH HOH . 
N 5 HOH C 23 323 82 HOH HOH . 
N 5 HOH C 24 324 74 HOH HOH . 
N 5 HOH C 25 325 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 JPB . . . E 3 24.258 18.067 -7.044 1 38.84 ? C4 JPB 202 A 1 
HETATM 2 C C5 JPB . . . E 3 25.892 19.84 -7.163 1 47.68 ? C5 JPB 202 A 1 
HETATM 3 C C6 JPB . . . E 3 26.265 21.159 -7.762 1 55.03 ? C6 JPB 202 A 1 
HETATM 4 C C11 JPB . . . E 3 26.375 22.28 -6.939 1 59.83 ? C11 JPB 202 A 1 
HETATM 5 C C7 JPB . . . E 3 26.597 21.283 -9.112 1 58.3 ? C7 JPB 202 A 1 
HETATM 6 C C8 JPB . . . E 3 26.99 22.497 -9.651 1 63.21 ? C8 JPB 202 A 1 
HETATM 7 C C9 JPB . . . E 3 27.07 23.586 -8.808 1 66.12 ? C9 JPB 202 A 1 
HETATM 8 C C10 JPB . . . E 3 26.758 23.505 -7.463 1 63.4 ? C10 JPB 202 A 1 
HETATM 9 N N1 JPB . . . E 3 23.387 16.378 -8.366 1 38.24 ? N1 JPB 202 A 1 
HETATM 10 N N2 JPB . . . E 3 24.707 19.341 -7.488 1 43.84 ? N2 JPB 202 A 1 
HETATM 11 C C3 JPB . . . E 3 22.734 18.033 -6.854 1 37.8 ? C3 JPB 202 A 1 
HETATM 12 O O1 JPB . . . E 3 25.573 16.994 -8.791 1 40.27 ? O1 JPB 202 A 1 
HETATM 13 C C1 JPB . . . E 3 24.53 17.087 -8.152 1 39.51 ? C1 JPB 202 A 1 
HETATM 14 C C2 JPB . . . E 3 22.305 16.835 -7.655 1 37.14 ? C2 JPB 202 A 1 
HETATM 15 O O2 JPB . . . E 3 21.218 16.29 -7.658 1 34.08 ? O2 JPB 202 A 1 
HETATM 16 O O3 JPB . . . E 3 26.64 19.261 -6.376 1 50.83 ? O3 JPB 202 A 1 
HETATM 17 CL CL1 JPB . . . E 3 26.5 19.925 -10.196 1 59.77 ? CL1 JPB 202 A 1 
HETATM 18 CL CL2 JPB . . . E 3 27.582 25.107 -9.466 1 79.28 ? CL2 JPB 202 A 1 
HETATM 19 CL CL3 JPB . . . E 3 25.971 22.179 -5.235 1 64.52 ? CL3 JPB 202 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           19 
#