data_6R1O # _model_server_result.job_id 6vWSu_nj-hcK6E8n3myDPQ _model_server_result.datetime_utc '2024-12-01 20:16:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6R1O # _exptl.entry_id 6R1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-pyridin-3-yl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R1O _cell.length_a 85.41 _cell.length_b 85.41 _cell.length_c 317.716 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C18 H22 N8 O8 S' _chem_comp.formula_weight 510.481 _chem_comp.id JPE _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-pyridin-3-yl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C16 JPE doub 191 n y N7 C17 JPE sing 192 n y C16 C15 JPE sing 193 n y C15 C14 JPE doub 194 n y C17 C13 JPE doub 195 n y C14 C13 JPE sing 196 n y O6 C6 JPE sing 197 n n C13 C12 JPE sing 198 n n C12 N5 JPE doub 199 n y C12 N6 JPE sing 200 n y N5 C11 JPE sing 201 n y C6 C5 JPE sing 202 n n C6 C7 JPE sing 203 n n O7 C5 JPE sing 204 n n N6 C8 JPE doub 205 n y C11 N4 JPE sing 206 n n C11 C9 JPE doub 207 n y C8 C9 JPE sing 208 n y C8 N2 JPE sing 209 n y C5 C4 JPE sing 210 n n C9 N3 JPE sing 211 n y N2 C7 JPE sing 212 n n N2 C10 JPE sing 213 n y C7 O5 JPE sing 214 n n N3 C10 JPE doub 215 n y O3 S JPE doub 216 n n C4 O5 JPE sing 217 n n C4 C3 JPE sing 218 n n C3 O4 JPE sing 219 n n S O4 JPE sing 220 n n S O2 JPE doub 221 n n S N1 JPE sing 222 n n N1 C2 JPE sing 223 n n C2 O1 JPE doub 224 n n C2 C JPE sing 225 n n O C1 JPE sing 226 n n C1 C JPE sing 227 n n C N JPE sing 228 n n N H1 JPE sing 229 n n N H2 JPE sing 230 n n C H4 JPE sing 231 n n O H5 JPE sing 232 n n N1 H6 JPE sing 233 n n C1 H7 JPE sing 234 n n C1 H8 JPE sing 235 n n C3 H9 JPE sing 236 n n C3 H10 JPE sing 237 n n C4 H11 JPE sing 238 n n C7 H12 JPE sing 239 n n C6 H13 JPE sing 240 n n O6 H14 JPE sing 241 n n C5 H15 JPE sing 242 n n O7 H16 JPE sing 243 n n C10 H17 JPE sing 244 n n N4 H18 JPE sing 245 n n N4 H19 JPE sing 246 n n C17 H20 JPE sing 247 n n C16 H21 JPE sing 248 n n C15 H22 JPE sing 249 n n C14 H23 JPE sing 250 n n # _atom_sites.entry_id 6R1O _atom_sites.fract_transf_matrix[1][1] 0.011708 _atom_sites.fract_transf_matrix[1][2] 0.00676 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JPE A 1 501 501 JPE PSA . C 2 JPE A 1 502 502 JPE PSA . D 2 JPE A 1 503 503 JPE PSA . E 3 CL A 1 504 1 CL CL . F 3 CL A 1 505 2 CL CL . G 4 SO4 A 1 506 1 SO4 SO4 . H 4 SO4 A 1 507 2 SO4 SO4 . I 4 SO4 A 1 508 3 SO4 SO4 . J 5 DMS A 1 509 1 DMS DMS . K 5 DMS A 1 510 2 DMS DMS . L 5 DMS A 1 511 3 DMS DMS . M 5 DMS A 1 512 4 DMS DMS . N 6 EDO A 1 513 1 EDO EDO . O 6 EDO A 1 514 2 EDO EDO . P 6 EDO A 1 515 3 EDO EDO . Q 6 EDO A 1 516 4 EDO EDO . R 6 EDO A 1 517 5 EDO EDO . S 7 TRS A 1 518 1 TRS TRS . T 8 HOH A 1 601 197 HOH HOH . T 8 HOH A 2 602 185 HOH HOH . T 8 HOH A 3 603 191 HOH HOH . T 8 HOH A 4 604 194 HOH HOH . T 8 HOH A 5 605 27 HOH HOH . T 8 HOH A 6 606 2 HOH HOH . T 8 HOH A 7 607 155 HOH HOH . T 8 HOH A 8 608 154 HOH HOH . T 8 HOH A 9 609 1 HOH HOH . T 8 HOH A 10 610 105 HOH HOH . T 8 HOH A 11 611 189 HOH HOH . T 8 HOH A 12 612 182 HOH HOH . T 8 HOH A 13 613 174 HOH HOH . T 8 HOH A 14 614 179 HOH HOH . T 8 HOH A 15 615 119 HOH HOH . T 8 HOH A 16 616 11 HOH HOH . T 8 HOH A 17 617 138 HOH HOH . T 8 HOH A 18 618 207 HOH HOH . T 8 HOH A 19 619 34 HOH HOH . T 8 HOH A 20 620 115 HOH HOH . T 8 HOH A 21 621 203 HOH HOH . T 8 HOH A 22 622 25 HOH HOH . T 8 HOH A 23 623 172 HOH HOH . T 8 HOH A 24 624 21 HOH HOH . T 8 HOH A 25 625 201 HOH HOH . T 8 HOH A 26 626 148 HOH HOH . T 8 HOH A 27 627 114 HOH HOH . T 8 HOH A 28 628 147 HOH HOH . T 8 HOH A 29 629 15 HOH HOH . T 8 HOH A 30 630 96 HOH HOH . T 8 HOH A 31 631 144 HOH HOH . T 8 HOH A 32 632 22 HOH HOH . T 8 HOH A 33 633 199 HOH HOH . T 8 HOH A 34 634 181 HOH HOH . T 8 HOH A 35 635 3 HOH HOH . T 8 HOH A 36 636 18 HOH HOH . T 8 HOH A 37 637 130 HOH HOH . T 8 HOH A 38 638 134 HOH HOH . T 8 HOH A 39 639 42 HOH HOH . T 8 HOH A 40 640 117 HOH HOH . T 8 HOH A 41 641 62 HOH HOH . T 8 HOH A 42 642 186 HOH HOH . T 8 HOH A 43 643 9 HOH HOH . T 8 HOH A 44 644 190 HOH HOH . T 8 HOH A 45 645 14 HOH HOH . T 8 HOH A 46 646 74 HOH HOH . T 8 HOH A 47 647 48 HOH HOH . T 8 HOH A 48 648 209 HOH HOH . T 8 HOH A 49 649 163 HOH HOH . T 8 HOH A 50 650 46 HOH HOH . T 8 HOH A 51 651 49 HOH HOH . T 8 HOH A 52 652 38 HOH HOH . T 8 HOH A 53 653 91 HOH HOH . T 8 HOH A 54 654 173 HOH HOH . T 8 HOH A 55 655 36 HOH HOH . T 8 HOH A 56 656 45 HOH HOH . T 8 HOH A 57 657 151 HOH HOH . T 8 HOH A 58 658 200 HOH HOH . T 8 HOH A 59 659 195 HOH HOH . T 8 HOH A 60 660 109 HOH HOH . T 8 HOH A 61 661 64 HOH HOH . T 8 HOH A 62 662 90 HOH HOH . T 8 HOH A 63 663 59 HOH HOH . T 8 HOH A 64 664 156 HOH HOH . T 8 HOH A 65 665 205 HOH HOH . T 8 HOH A 66 666 12 HOH HOH . T 8 HOH A 67 667 10 HOH HOH . T 8 HOH A 68 668 53 HOH HOH . T 8 HOH A 69 669 208 HOH HOH . T 8 HOH A 70 670 75 HOH HOH . T 8 HOH A 71 671 63 HOH HOH . T 8 HOH A 72 672 159 HOH HOH . T 8 HOH A 73 673 7 HOH HOH . T 8 HOH A 74 674 76 HOH HOH . T 8 HOH A 75 675 39 HOH HOH . T 8 HOH A 76 676 56 HOH HOH . T 8 HOH A 77 677 55 HOH HOH . T 8 HOH A 78 678 73 HOH HOH . T 8 HOH A 79 679 26 HOH HOH . T 8 HOH A 80 680 29 HOH HOH . T 8 HOH A 81 681 23 HOH HOH . T 8 HOH A 82 682 83 HOH HOH . T 8 HOH A 83 683 171 HOH HOH . T 8 HOH A 84 684 71 HOH HOH . T 8 HOH A 85 685 52 HOH HOH . T 8 HOH A 86 686 125 HOH HOH . T 8 HOH A 87 687 160 HOH HOH . T 8 HOH A 88 688 28 HOH HOH . T 8 HOH A 89 689 93 HOH HOH . T 8 HOH A 90 690 143 HOH HOH . T 8 HOH A 91 691 97 HOH HOH . T 8 HOH A 92 692 108 HOH HOH . T 8 HOH A 93 693 84 HOH HOH . T 8 HOH A 94 694 120 HOH HOH . T 8 HOH A 95 695 131 HOH HOH . T 8 HOH A 96 696 170 HOH HOH . T 8 HOH A 97 697 78 HOH HOH . T 8 HOH A 98 698 111 HOH HOH . T 8 HOH A 99 699 132 HOH HOH . T 8 HOH A 100 700 104 HOH HOH . T 8 HOH A 101 701 51 HOH HOH . T 8 HOH A 102 702 129 HOH HOH . T 8 HOH A 103 703 58 HOH HOH . T 8 HOH A 104 704 57 HOH HOH . T 8 HOH A 105 705 47 HOH HOH . T 8 HOH A 106 706 118 HOH HOH . T 8 HOH A 107 707 68 HOH HOH . T 8 HOH A 108 708 121 HOH HOH . T 8 HOH A 109 709 149 HOH HOH . T 8 HOH A 110 710 192 HOH HOH . T 8 HOH A 111 711 113 HOH HOH . T 8 HOH A 112 712 88 HOH HOH . T 8 HOH A 113 713 206 HOH HOH . T 8 HOH A 114 714 86 HOH HOH . T 8 HOH A 115 715 136 HOH HOH . T 8 HOH A 116 716 35 HOH HOH . T 8 HOH A 117 717 183 HOH HOH . T 8 HOH A 118 718 139 HOH HOH . T 8 HOH A 119 719 77 HOH HOH . T 8 HOH A 120 720 204 HOH HOH . T 8 HOH A 121 721 187 HOH HOH . T 8 HOH A 122 722 193 HOH HOH . T 8 HOH A 123 723 127 HOH HOH . T 8 HOH A 124 724 40 HOH HOH . T 8 HOH A 125 725 82 HOH HOH . T 8 HOH A 126 726 157 HOH HOH . T 8 HOH A 127 727 202 HOH HOH . T 8 HOH A 128 728 196 HOH HOH . T 8 HOH A 129 729 100 HOH HOH . T 8 HOH A 130 730 188 HOH HOH . T 8 HOH A 131 731 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N JPE . . . B 2 4.393 14.827 -4.987 0.86 37.52 ? N JPE 501 A 1 HETATM 2 C C JPE . . . B 2 4.484 15.566 -6.247 0.86 41.59 ? C JPE 501 A 1 HETATM 3 O O JPE . . . B 2 6.631 14.518 -6.613 0.86 45.98 ? O JPE 501 A 1 HETATM 4 O O3 JPE . . . B 2 3.829 15.078 -11.122 0.86 53.3 ? O3 JPE 501 A 1 HETATM 5 S S JPE . . . B 2 3.471 14.407 -9.928 0.86 53.79 ? S JPE 501 A 1 HETATM 6 O O2 JPE . . . B 2 2.152 13.935 -9.722 0.86 52.58 ? O2 JPE 501 A 1 HETATM 7 N N1 JPE . . . B 2 3.867 15.217 -8.618 0.86 52.84 ? N1 JPE 501 A 1 HETATM 8 C C2 JPE . . . B 2 3.825 14.713 -7.299 0.86 47.57 ? C2 JPE 501 A 1 HETATM 9 O O1 JPE . . . B 2 3.274 13.638 -7.101 0.86 49.59 ? O1 JPE 501 A 1 HETATM 10 C C1 JPE . . . B 2 5.955 15.758 -6.597 0.86 44.15 ? C1 JPE 501 A 1 HETATM 11 O O4 JPE . . . B 2 4.389 13.114 -9.882 0.86 52.77 ? O4 JPE 501 A 1 HETATM 12 C C3 JPE . . . B 2 5.819 13.311 -9.945 0.86 49.34 ? C3 JPE 501 A 1 HETATM 13 C C4 JPE . . . B 2 6.346 12.334 -10.959 0.86 50.39 ? C4 JPE 501 A 1 HETATM 14 O O5 JPE . . . B 2 5.79 11.034 -10.696 0.86 52.64 ? O5 JPE 501 A 1 HETATM 15 C C7 JPE . . . B 2 5.705 10.302 -11.903 0.86 51.01 ? C7 JPE 501 A 1 HETATM 16 C C6 JPE . . . B 2 6.078 11.25 -13.048 0.86 51.95 ? C6 JPE 501 A 1 HETATM 17 O O6 JPE . . . B 2 7.406 11.002 -13.477 0.86 54.41 ? O6 JPE 501 A 1 HETATM 18 C C5 JPE . . . B 2 5.95 12.622 -12.394 0.86 51.14 ? C5 JPE 501 A 1 HETATM 19 O O7 JPE . . . B 2 6.831 13.554 -13 0.86 53.72 ? O7 JPE 501 A 1 HETATM 20 N N2 JPE . . . B 2 4.366 9.742 -12.008 0.86 47.72 ? N2 JPE 501 A 1 HETATM 21 C C10 JPE . . . B 2 3.178 10.351 -11.708 0.86 46.67 ? C10 JPE 501 A 1 HETATM 22 N N3 JPE . . . B 2 2.128 9.593 -11.898 0.86 44.82 ? N3 JPE 501 A 1 HETATM 23 C C9 JPE . . . B 2 2.665 8.399 -12.352 0.86 42.96 ? C9 JPE 501 A 1 HETATM 24 C C11 JPE . . . B 2 2.09 7.168 -12.712 0.86 42.7 ? C11 JPE 501 A 1 HETATM 25 N N4 JPE . . . B 2 0.789 6.899 -12.624 0.86 39.39 ? N4 JPE 501 A 1 HETATM 26 N N5 JPE . . . B 2 2.909 6.18 -13.113 0.86 41.52 ? N5 JPE 501 A 1 HETATM 27 C C12 JPE . . . B 2 4.236 6.374 -13.129 0.86 42.09 ? C12 JPE 501 A 1 HETATM 28 N N6 JPE . . . B 2 4.867 7.509 -12.807 0.86 39.65 ? N6 JPE 501 A 1 HETATM 29 C C8 JPE . . . B 2 4.039 8.479 -12.428 0.86 41.98 ? C8 JPE 501 A 1 HETATM 30 C C13 JPE . . . B 2 5.08 5.22 -13.472 0.86 46.34 ? C13 JPE 501 A 1 HETATM 31 C C17 JPE . . . B 2 4.563 3.978 -13.799 0.86 47.36 ? C17 JPE 501 A 1 HETATM 32 N N7 JPE . . . B 2 5.306 2.917 -14.12 0.86 56.88 ? N7 JPE 501 A 1 HETATM 33 C C16 JPE . . . B 2 6.629 3.072 -14.119 0.86 60.49 ? C16 JPE 501 A 1 HETATM 34 C C15 JPE . . . B 2 7.245 4.254 -13.812 0.86 65.37 ? C15 JPE 501 A 1 HETATM 35 C C14 JPE . . . B 2 6.46 5.34 -13.488 0.86 60.03 ? C14 JPE 501 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #