data_6R1O
#
_model_server_result.job_id            L8gus2Kbz15cX_bl3sI5vw 
_model_server_result.datetime_utc      '2024-11-15 01:31:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6R1O 
#
_exptl.entry_id    6R1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-pyridin-3-yl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6R1O 
_cell.length_a            85.41 
_cell.length_b            85.41 
_cell.length_c            317.716 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C18 H22 N8 O8 S' 
_chem_comp.formula_weight    510.481 
_chem_comp.id                JPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-pyridin-3-yl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C16 JPE doub 191 n y 
N7 C17 JPE sing 192 n y 
C16 C15 JPE sing 193 n y 
C15 C14 JPE doub 194 n y 
C17 C13 JPE doub 195 n y 
C14 C13 JPE sing 196 n y 
O6 C6 JPE sing 197 n n 
C13 C12 JPE sing 198 n n 
C12 N5 JPE doub 199 n y 
C12 N6 JPE sing 200 n y 
N5 C11 JPE sing 201 n y 
C6 C5 JPE sing 202 n n 
C6 C7 JPE sing 203 n n 
O7 C5 JPE sing 204 n n 
N6 C8 JPE doub 205 n y 
C11 N4 JPE sing 206 n n 
C11 C9 JPE doub 207 n y 
C8 C9 JPE sing 208 n y 
C8 N2 JPE sing 209 n y 
C5 C4 JPE sing 210 n n 
C9 N3 JPE sing 211 n y 
N2 C7 JPE sing 212 n n 
N2 C10 JPE sing 213 n y 
C7 O5 JPE sing 214 n n 
N3 C10 JPE doub 215 n y 
O3 S JPE doub 216 n n 
C4 O5 JPE sing 217 n n 
C4 C3 JPE sing 218 n n 
C3 O4 JPE sing 219 n n 
S O4 JPE sing 220 n n 
S O2 JPE doub 221 n n 
S N1 JPE sing 222 n n 
N1 C2 JPE sing 223 n n 
C2 O1 JPE doub 224 n n 
C2 C JPE sing 225 n n 
O C1 JPE sing 226 n n 
C1 C JPE sing 227 n n 
C N JPE sing 228 n n 
N H1 JPE sing 229 n n 
N H2 JPE sing 230 n n 
C H4 JPE sing 231 n n 
O H5 JPE sing 232 n n 
N1 H6 JPE sing 233 n n 
C1 H7 JPE sing 234 n n 
C1 H8 JPE sing 235 n n 
C3 H9 JPE sing 236 n n 
C3 H10 JPE sing 237 n n 
C4 H11 JPE sing 238 n n 
C7 H12 JPE sing 239 n n 
C6 H13 JPE sing 240 n n 
O6 H14 JPE sing 241 n n 
C5 H15 JPE sing 242 n n 
O7 H16 JPE sing 243 n n 
C10 H17 JPE sing 244 n n 
N4 H18 JPE sing 245 n n 
N4 H19 JPE sing 246 n n 
C17 H20 JPE sing 247 n n 
C16 H21 JPE sing 248 n n 
C15 H22 JPE sing 249 n n 
C14 H23 JPE sing 250 n n 
#
_atom_sites.entry_id                     6R1O 
_atom_sites.fract_transf_matrix[1][1]    0.011708 
_atom_sites.fract_transf_matrix[1][2]    0.00676 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JPE A 1 501 501 JPE PSA . 
C 2 JPE A 1 502 502 JPE PSA . 
D 2 JPE A 1 503 503 JPE PSA . 
E 3 CL A 1 504 1 CL CL . 
F 3 CL A 1 505 2 CL CL . 
G 4 SO4 A 1 506 1 SO4 SO4 . 
H 4 SO4 A 1 507 2 SO4 SO4 . 
I 4 SO4 A 1 508 3 SO4 SO4 . 
J 5 DMS A 1 509 1 DMS DMS . 
K 5 DMS A 1 510 2 DMS DMS . 
L 5 DMS A 1 511 3 DMS DMS . 
M 5 DMS A 1 512 4 DMS DMS . 
N 6 EDO A 1 513 1 EDO EDO . 
O 6 EDO A 1 514 2 EDO EDO . 
P 6 EDO A 1 515 3 EDO EDO . 
Q 6 EDO A 1 516 4 EDO EDO . 
R 6 EDO A 1 517 5 EDO EDO . 
S 7 TRS A 1 518 1 TRS TRS . 
T 8 HOH A 1 601 197 HOH HOH . 
T 8 HOH A 2 602 185 HOH HOH . 
T 8 HOH A 3 603 191 HOH HOH . 
T 8 HOH A 4 604 194 HOH HOH . 
T 8 HOH A 5 605 27 HOH HOH . 
T 8 HOH A 6 606 2 HOH HOH . 
T 8 HOH A 7 607 155 HOH HOH . 
T 8 HOH A 8 608 154 HOH HOH . 
T 8 HOH A 9 609 1 HOH HOH . 
T 8 HOH A 10 610 105 HOH HOH . 
T 8 HOH A 11 611 189 HOH HOH . 
T 8 HOH A 12 612 182 HOH HOH . 
T 8 HOH A 13 613 174 HOH HOH . 
T 8 HOH A 14 614 179 HOH HOH . 
T 8 HOH A 15 615 119 HOH HOH . 
T 8 HOH A 16 616 11 HOH HOH . 
T 8 HOH A 17 617 138 HOH HOH . 
T 8 HOH A 18 618 207 HOH HOH . 
T 8 HOH A 19 619 34 HOH HOH . 
T 8 HOH A 20 620 115 HOH HOH . 
T 8 HOH A 21 621 203 HOH HOH . 
T 8 HOH A 22 622 25 HOH HOH . 
T 8 HOH A 23 623 172 HOH HOH . 
T 8 HOH A 24 624 21 HOH HOH . 
T 8 HOH A 25 625 201 HOH HOH . 
T 8 HOH A 26 626 148 HOH HOH . 
T 8 HOH A 27 627 114 HOH HOH . 
T 8 HOH A 28 628 147 HOH HOH . 
T 8 HOH A 29 629 15 HOH HOH . 
T 8 HOH A 30 630 96 HOH HOH . 
T 8 HOH A 31 631 144 HOH HOH . 
T 8 HOH A 32 632 22 HOH HOH . 
T 8 HOH A 33 633 199 HOH HOH . 
T 8 HOH A 34 634 181 HOH HOH . 
T 8 HOH A 35 635 3 HOH HOH . 
T 8 HOH A 36 636 18 HOH HOH . 
T 8 HOH A 37 637 130 HOH HOH . 
T 8 HOH A 38 638 134 HOH HOH . 
T 8 HOH A 39 639 42 HOH HOH . 
T 8 HOH A 40 640 117 HOH HOH . 
T 8 HOH A 41 641 62 HOH HOH . 
T 8 HOH A 42 642 186 HOH HOH . 
T 8 HOH A 43 643 9 HOH HOH . 
T 8 HOH A 44 644 190 HOH HOH . 
T 8 HOH A 45 645 14 HOH HOH . 
T 8 HOH A 46 646 74 HOH HOH . 
T 8 HOH A 47 647 48 HOH HOH . 
T 8 HOH A 48 648 209 HOH HOH . 
T 8 HOH A 49 649 163 HOH HOH . 
T 8 HOH A 50 650 46 HOH HOH . 
T 8 HOH A 51 651 49 HOH HOH . 
T 8 HOH A 52 652 38 HOH HOH . 
T 8 HOH A 53 653 91 HOH HOH . 
T 8 HOH A 54 654 173 HOH HOH . 
T 8 HOH A 55 655 36 HOH HOH . 
T 8 HOH A 56 656 45 HOH HOH . 
T 8 HOH A 57 657 151 HOH HOH . 
T 8 HOH A 58 658 200 HOH HOH . 
T 8 HOH A 59 659 195 HOH HOH . 
T 8 HOH A 60 660 109 HOH HOH . 
T 8 HOH A 61 661 64 HOH HOH . 
T 8 HOH A 62 662 90 HOH HOH . 
T 8 HOH A 63 663 59 HOH HOH . 
T 8 HOH A 64 664 156 HOH HOH . 
T 8 HOH A 65 665 205 HOH HOH . 
T 8 HOH A 66 666 12 HOH HOH . 
T 8 HOH A 67 667 10 HOH HOH . 
T 8 HOH A 68 668 53 HOH HOH . 
T 8 HOH A 69 669 208 HOH HOH . 
T 8 HOH A 70 670 75 HOH HOH . 
T 8 HOH A 71 671 63 HOH HOH . 
T 8 HOH A 72 672 159 HOH HOH . 
T 8 HOH A 73 673 7 HOH HOH . 
T 8 HOH A 74 674 76 HOH HOH . 
T 8 HOH A 75 675 39 HOH HOH . 
T 8 HOH A 76 676 56 HOH HOH . 
T 8 HOH A 77 677 55 HOH HOH . 
T 8 HOH A 78 678 73 HOH HOH . 
T 8 HOH A 79 679 26 HOH HOH . 
T 8 HOH A 80 680 29 HOH HOH . 
T 8 HOH A 81 681 23 HOH HOH . 
T 8 HOH A 82 682 83 HOH HOH . 
T 8 HOH A 83 683 171 HOH HOH . 
T 8 HOH A 84 684 71 HOH HOH . 
T 8 HOH A 85 685 52 HOH HOH . 
T 8 HOH A 86 686 125 HOH HOH . 
T 8 HOH A 87 687 160 HOH HOH . 
T 8 HOH A 88 688 28 HOH HOH . 
T 8 HOH A 89 689 93 HOH HOH . 
T 8 HOH A 90 690 143 HOH HOH . 
T 8 HOH A 91 691 97 HOH HOH . 
T 8 HOH A 92 692 108 HOH HOH . 
T 8 HOH A 93 693 84 HOH HOH . 
T 8 HOH A 94 694 120 HOH HOH . 
T 8 HOH A 95 695 131 HOH HOH . 
T 8 HOH A 96 696 170 HOH HOH . 
T 8 HOH A 97 697 78 HOH HOH . 
T 8 HOH A 98 698 111 HOH HOH . 
T 8 HOH A 99 699 132 HOH HOH . 
T 8 HOH A 100 700 104 HOH HOH . 
T 8 HOH A 101 701 51 HOH HOH . 
T 8 HOH A 102 702 129 HOH HOH . 
T 8 HOH A 103 703 58 HOH HOH . 
T 8 HOH A 104 704 57 HOH HOH . 
T 8 HOH A 105 705 47 HOH HOH . 
T 8 HOH A 106 706 118 HOH HOH . 
T 8 HOH A 107 707 68 HOH HOH . 
T 8 HOH A 108 708 121 HOH HOH . 
T 8 HOH A 109 709 149 HOH HOH . 
T 8 HOH A 110 710 192 HOH HOH . 
T 8 HOH A 111 711 113 HOH HOH . 
T 8 HOH A 112 712 88 HOH HOH . 
T 8 HOH A 113 713 206 HOH HOH . 
T 8 HOH A 114 714 86 HOH HOH . 
T 8 HOH A 115 715 136 HOH HOH . 
T 8 HOH A 116 716 35 HOH HOH . 
T 8 HOH A 117 717 183 HOH HOH . 
T 8 HOH A 118 718 139 HOH HOH . 
T 8 HOH A 119 719 77 HOH HOH . 
T 8 HOH A 120 720 204 HOH HOH . 
T 8 HOH A 121 721 187 HOH HOH . 
T 8 HOH A 122 722 193 HOH HOH . 
T 8 HOH A 123 723 127 HOH HOH . 
T 8 HOH A 124 724 40 HOH HOH . 
T 8 HOH A 125 725 82 HOH HOH . 
T 8 HOH A 126 726 157 HOH HOH . 
T 8 HOH A 127 727 202 HOH HOH . 
T 8 HOH A 128 728 196 HOH HOH . 
T 8 HOH A 129 729 100 HOH HOH . 
T 8 HOH A 130 730 188 HOH HOH . 
T 8 HOH A 131 731 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 JPE . . . C 2 12.315 21.361 12.788 0.62 61.07 ? C7 JPE 502 A 1 
HETATM 2 N N2 JPE . . . C 2 10.924 20.937 12.968 0.62 61.54 ? N2 JPE 502 A 1 
HETATM 3 C C10 JPE . . . C 2 9.874 21.701 13.41 0.62 60.83 ? C10 JPE 502 A 1 
HETATM 4 N N3 JPE . . . C 2 8.713 21.09 13.371 0.62 60.06 ? N3 JPE 502 A 1 
HETATM 5 C C9 JPE . . . C 2 9.019 19.836 12.862 0.62 58.94 ? C9 JPE 502 A 1 
HETATM 6 C C11 JPE . . . C 2 8.224 18.732 12.491 0.62 54.84 ? C11 JPE 502 A 1 
HETATM 7 N N4 JPE . . . C 2 6.939 18.597 12.815 0.62 54.54 ? N4 JPE 502 A 1 
HETATM 8 N N5 JPE . . . C 2 8.826 17.69 11.882 0.62 54.31 ? N5 JPE 502 A 1 
HETATM 9 C C12 JPE . . . C 2 10.164 17.685 11.717 0.62 56.3 ? C12 JPE 502 A 1 
HETATM 10 N N6 JPE . . . C 2 11.003 18.671 12.083 0.62 58.12 ? N6 JPE 502 A 1 
HETATM 11 C C8 JPE . . . C 2 10.379 19.723 12.622 0.62 60.28 ? C8 JPE 502 A 1 
HETATM 12 C C13 JPE . . . C 2 10.754 16.537 10.997 0.62 55.45 ? C13 JPE 502 A 1 
HETATM 13 C C17 JPE . . . C 2 12.125 16.279 10.999 0.62 54.81 ? C17 JPE 502 A 1 
HETATM 14 N N7 JPE . . . C 2 12.688 15.203 10.432 0.62 56.66 ? N7 JPE 502 A 1 
HETATM 15 C C16 JPE . . . C 2 11.877 14.339 9.805 0.62 55.96 ? C16 JPE 502 A 1 
HETATM 16 C C15 JPE . . . C 2 10.51 14.5 9.739 0.62 56.95 ? C15 JPE 502 A 1 
HETATM 17 C C14 JPE . . . C 2 9.944 15.602 10.357 0.62 56.68 ? C14 JPE 502 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#