data_6R1P # _model_server_result.job_id SH46LCObG7OPHP5nYAGz6g _model_server_result.datetime_utc '2024-10-19 16:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6R1P # _exptl.entry_id 6R1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[4-(2,3-dihydro-1,4-benzodioxin-6-yl)-1,2,3-triazol-1-yl]ethyl]-6-methyl-1~{H}-pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R1P _cell.length_a 121.764 _cell.length_b 121.764 _cell.length_c 33.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H17 N5 O3' _chem_comp.formula_weight 339.349 _chem_comp.id JPH _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[4-(2,3-dihydro-1,4-benzodioxin-6-yl)-1,2,3-triazol-1-yl]ethyl]-6-methyl-1~{H}-pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAQ JPH doub 160 n y CAR CAS JPH sing 161 n y CAX OAY JPH sing 162 n n CAX CAW JPH sing 163 n n OAY CAS JPH sing 164 n n CAQ CAP JPH sing 165 n y CAS CAT JPH doub 166 n y CAP CAM JPH sing 167 n n CAP CAU JPH doub 168 n y CAT CAU JPH sing 169 n y CAT OAV JPH sing 170 n n CAW OAV JPH sing 171 n n CAM CAL JPH doub 172 n y CAM NAN JPH sing 173 n y CAL NAK JPH sing 174 n y NAN NAO JPH doub 175 n y NAK NAO JPH sing 176 n y NAK CAJ JPH sing 177 n n CAJ CAI JPH sing 178 n n CAI C2 JPH sing 179 n n N1 C2 JPH doub 180 n n N1 C6 JPH sing 181 n n C2 N3 JPH sing 182 n n O6 C6 JPH doub 183 n n C6 C5 JPH sing 184 n n N3 C4 JPH sing 185 n n C5 C4 JPH doub 186 n n C4 CAA JPH sing 187 n n C5 H1 JPH sing 188 n n CAU H3 JPH sing 189 n n CAW H4 JPH sing 190 n n CAW H5 JPH sing 191 n n CAX H6 JPH sing 192 n n CAX H7 JPH sing 193 n n CAR H8 JPH sing 194 n n CAQ H9 JPH sing 195 n n CAL H10 JPH sing 196 n n CAJ H11 JPH sing 197 n n CAJ H12 JPH sing 198 n n CAI H13 JPH sing 199 n n CAI H14 JPH sing 200 n n CAA H15 JPH sing 201 n n CAA H16 JPH sing 202 n n CAA H17 JPH sing 203 n n N3 H18 JPH sing 204 n n # _atom_sites.entry_id 6R1P _atom_sites.fract_transf_matrix[1][1] 0.008213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JPH A 1 301 1 JPH LIG . C 3 HOH A 1 401 33 HOH HOH . C 3 HOH A 2 402 74 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 37 HOH HOH . C 3 HOH A 5 405 32 HOH HOH . C 3 HOH A 6 406 70 HOH HOH . C 3 HOH A 7 407 23 HOH HOH . C 3 HOH A 8 408 7 HOH HOH . C 3 HOH A 9 409 49 HOH HOH . C 3 HOH A 10 410 78 HOH HOH . C 3 HOH A 11 411 59 HOH HOH . C 3 HOH A 12 412 5 HOH HOH . C 3 HOH A 13 413 66 HOH HOH . C 3 HOH A 14 414 29 HOH HOH . C 3 HOH A 15 415 51 HOH HOH . C 3 HOH A 16 416 17 HOH HOH . C 3 HOH A 17 417 14 HOH HOH . C 3 HOH A 18 418 73 HOH HOH . C 3 HOH A 19 419 24 HOH HOH . C 3 HOH A 20 420 35 HOH HOH . C 3 HOH A 21 421 34 HOH HOH . C 3 HOH A 22 422 50 HOH HOH . C 3 HOH A 23 423 10 HOH HOH . C 3 HOH A 24 424 4 HOH HOH . C 3 HOH A 25 425 42 HOH HOH . C 3 HOH A 26 426 46 HOH HOH . C 3 HOH A 27 427 45 HOH HOH . C 3 HOH A 28 428 63 HOH HOH . C 3 HOH A 29 429 56 HOH HOH . C 3 HOH A 30 430 39 HOH HOH . C 3 HOH A 31 431 69 HOH HOH . C 3 HOH A 32 432 1 HOH HOH . C 3 HOH A 33 433 2 HOH HOH . C 3 HOH A 34 434 77 HOH HOH . C 3 HOH A 35 435 76 HOH HOH . C 3 HOH A 36 436 75 HOH HOH . C 3 HOH A 37 437 12 HOH HOH . C 3 HOH A 38 438 53 HOH HOH . C 3 HOH A 39 439 11 HOH HOH . C 3 HOH A 40 440 43 HOH HOH . C 3 HOH A 41 441 6 HOH HOH . C 3 HOH A 42 442 9 HOH HOH . C 3 HOH A 43 443 57 HOH HOH . C 3 HOH A 44 444 55 HOH HOH . C 3 HOH A 45 445 58 HOH HOH . C 3 HOH A 46 446 31 HOH HOH . C 3 HOH A 47 447 8 HOH HOH . C 3 HOH A 48 448 52 HOH HOH . C 3 HOH A 49 449 13 HOH HOH . C 3 HOH A 50 450 20 HOH HOH . C 3 HOH A 51 451 64 HOH HOH . C 3 HOH A 52 452 19 HOH HOH . C 3 HOH A 53 453 71 HOH HOH . C 3 HOH A 54 454 25 HOH HOH . C 3 HOH A 55 455 38 HOH HOH . C 3 HOH A 56 456 21 HOH HOH . C 3 HOH A 57 457 62 HOH HOH . C 3 HOH A 58 458 80 HOH HOH . C 3 HOH A 59 459 16 HOH HOH . C 3 HOH A 60 460 47 HOH HOH . C 3 HOH A 61 461 22 HOH HOH . C 3 HOH A 62 462 28 HOH HOH . C 3 HOH A 63 463 79 HOH HOH . C 3 HOH A 64 464 60 HOH HOH . C 3 HOH A 65 465 44 HOH HOH . C 3 HOH A 66 466 48 HOH HOH . C 3 HOH A 67 467 15 HOH HOH . C 3 HOH A 68 468 26 HOH HOH . C 3 HOH A 69 469 65 HOH HOH . C 3 HOH A 70 470 72 HOH HOH . C 3 HOH A 71 471 41 HOH HOH . C 3 HOH A 72 472 54 HOH HOH . C 3 HOH A 73 473 36 HOH HOH . C 3 HOH A 74 474 30 HOH HOH . C 3 HOH A 75 475 61 HOH HOH . C 3 HOH A 76 476 40 HOH HOH . C 3 HOH A 77 477 18 HOH HOH . C 3 HOH A 78 478 67 HOH HOH . C 3 HOH A 79 479 68 HOH HOH . C 3 HOH A 80 480 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JPH . A . B 2 -0.327 -25.97 7.383 0.5 39.19 ? N1 JPH 301 A 1 HETATM 2 N N1 JPH . B . B 2 -1.351 -26.953 10.615 0.5 66.91 ? N1 JPH 301 A 1 HETATM 3 N N3 JPH . A . B 2 -0.813 -27.919 8.75 0.5 34.86 ? N3 JPH 301 A 1 HETATM 4 N N3 JPH . B . B 2 -0.115 -25.786 8.948 0.5 70.34 ? N3 JPH 301 A 1 HETATM 5 C C4 JPH . A . B 2 -0.974 -27.121 9.827 0.5 38.36 ? C4 JPH 301 A 1 HETATM 6 C C4 JPH . B . B 2 0.341 -24.921 9.865 0.5 65.71 ? C4 JPH 301 A 1 HETATM 7 C C5 JPH . A . B 2 -0.832 -25.716 9.746 0.5 38.06 ? C5 JPH 301 A 1 HETATM 8 C C5 JPH . B . B 2 -0.039 -25.033 11.191 0.5 61.65 ? C5 JPH 301 A 1 HETATM 9 C C6 JPH . A . B 2 -0.494 -25.15 8.516 0.5 36.92 ? C6 JPH 301 A 1 HETATM 10 C C6 JPH . B . B 2 -0.889 -26.046 11.576 0.5 58.31 ? C6 JPH 301 A 1 HETATM 11 C CAU JPH . A . B 2 -6.657 -28.629 4.597 0.5 64.78 ? CAU JPH 301 A 1 HETATM 12 C CAU JPH . B . B 2 -5.827 -28.623 4.777 0.5 116 ? CAU JPH 301 A 1 HETATM 13 C CAT JPH . A . B 2 -7.952 -28.209 4.223 0.5 65.24 ? CAT JPH 301 A 1 HETATM 14 C CAT JPH . B . B 2 -7.182 -28.435 4.453 0.5 127.42 ? CAT JPH 301 A 1 HETATM 15 O OAV JPH . A . B 2 -9.094 -28.863 4.637 0.5 69.91 ? OAV JPH 301 A 1 HETATM 16 O OAV JPH . B . B 2 -8.146 -29.327 4.845 0.5 141.65 ? OAV JPH 301 A 1 HETATM 17 C CAW JPH . A . B 2 -10.379 -28.231 4.377 0.5 63.95 ? CAW JPH 301 A 1 HETATM 18 C CAW JPH . B . B 2 -9.459 -28.726 4.964 0.5 139.83 ? CAW JPH 301 A 1 HETATM 19 C CAX JPH . A . B 2 -10.364 -27.69 2.991 0.5 58.94 ? CAX JPH 301 A 1 HETATM 20 C CAX JPH . B . B 2 -9.82 -28.127 3.634 0.5 133.21 ? CAX JPH 301 A 1 HETATM 21 O OAY JPH . A . B 2 -9.347 -26.696 3 0.5 64.47 ? OAY JPH 301 A 1 HETATM 22 O OAY JPH . B . B 2 -8.887 -27.099 3.352 0.5 128.74 ? OAY JPH 301 A 1 HETATM 23 C CAS JPH . A . B 2 -8.102 -27.108 3.39 0.5 60.67 ? CAS JPH 301 A 1 HETATM 24 C CAS JPH . B . B 2 -7.572 -27.321 3.701 0.5 124.84 ? CAS JPH 301 A 1 HETATM 25 C CAR JPH . A . B 2 -6.968 -26.442 2.957 0.5 65.14 ? CAR JPH 301 A 1 HETATM 26 C CAR JPH . B . B 2 -6.6 -26.42 3.304 0.5 121.42 ? CAR JPH 301 A 1 HETATM 27 C CAQ JPH . A . B 2 -5.691 -26.84 3.335 0.5 60.33 ? CAQ JPH 301 A 1 HETATM 28 C CAQ JPH . B . B 2 -5.264 -26.599 3.632 0.5 113.33 ? CAQ JPH 301 A 1 HETATM 29 C CAP JPH . A . B 2 -5.527 -27.937 4.145 0.5 59.4 ? CAP JPH 301 A 1 HETATM 30 C CAP JPH . B . B 2 -4.858 -27.702 4.361 0.5 107.43 ? CAP JPH 301 A 1 HETATM 31 C CAM JPH . A . B 2 -4.287 -28.268 4.47 0.5 62.54 ? CAM JPH 301 A 1 HETATM 32 C CAM JPH . B . B 2 -3.55 -27.761 4.65 0.5 99.9 ? CAM JPH 301 A 1 HETATM 33 C CAL JPH . A . B 2 -3.285 -27.394 4.579 0.5 59.94 ? CAL JPH 301 A 1 HETATM 34 C CAL JPH . B . B 2 -3.054 -27.431 5.846 0.5 90.76 ? CAL JPH 301 A 1 HETATM 35 N NAN JPH . A . B 2 -3.864 -29.494 4.744 0.5 67.88 ? NAN JPH 301 A 1 HETATM 36 N NAN JPH . B . B 2 -2.554 -28.053 3.817 0.5 92.93 ? NAN JPH 301 A 1 HETATM 37 N NAO JPH . A . B 2 -2.551 -29.361 5.026 0.5 62.52 ? NAO JPH 301 A 1 HETATM 38 N NAO JPH . B . B 2 -1.413 -27.934 4.537 0.5 88.94 ? NAO JPH 301 A 1 HETATM 39 N NAK JPH . A . B 2 -2.2 -28.072 4.942 0.5 54.59 ? NAK JPH 301 A 1 HETATM 40 N NAK JPH . B . B 2 -1.726 -27.554 5.803 0.5 90.23 ? NAK JPH 301 A 1 HETATM 41 C CAJ JPH . A . B 2 -0.883 -27.536 5.166 0.5 47.18 ? CAJ JPH 301 A 1 HETATM 42 C CAJ JPH . B . B 2 -0.764 -27.278 6.917 0.5 87.99 ? CAJ JPH 301 A 1 HETATM 43 C CAI JPH . A . B 2 -0.284 -28.212 6.39 0.5 44.54 ? CAI JPH 301 A 1 HETATM 44 C CAI JPH . B . B 2 -1.402 -27.664 8.247 0.5 78.22 ? CAI JPH 301 A 1 HETATM 45 C C2 JPH . A . B 2 -0.49 -27.385 7.532 0.5 43.44 ? C2 JPH 301 A 1 HETATM 46 C C2 JPH . B . B 2 -0.932 -26.804 9.266 0.5 72.65 ? C2 JPH 301 A 1 HETATM 47 C CAA JPH . A . B 2 -1.323 -27.685 11.047 0.5 36.58 ? CAA JPH 301 A 1 HETATM 48 C CAA JPH . B . B 2 1.205 -23.904 9.473 0.5 67.26 ? CAA JPH 301 A 1 HETATM 49 O O6 JPH . A . B 2 -0.339 -23.937 8.417 0.5 36.75 ? O6 JPH 301 A 1 HETATM 50 O O6 JPH . B . B 2 -1.211 -26.134 12.754 0.5 53.26 ? O6 JPH 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 50 #