data_6R1Q # _model_server_result.job_id '_jQ88JSqbD2XJvoVd5Towg' _model_server_result.datetime_utc '2024-10-18 16:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6R1Q # _exptl.entry_id 6R1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R1Q _cell.length_a 87.951 _cell.length_b 87.951 _cell.length_c 112.923 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6R1Q _atom_sites.fract_transf_matrix[1][1] 0.01137 _atom_sites.fract_transf_matrix[1][2] 0.006564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 200 SO4 SO4 . C 3 HEM A 1 202 201 HEM HEM . D 4 AR A 1 203 202 AR AR . E 4 AR A 1 204 203 AR AR . F 4 AR A 1 205 204 AR AR . G 4 AR A 1 206 205 AR AR . H 4 AR A 1 207 206 AR AR . I 4 AR A 1 208 207 AR AR . J 4 AR A 1 209 208 AR AR . K 4 AR A 1 210 209 AR AR . L 4 AR A 1 211 210 AR AR . M 4 AR A 1 212 211 AR AR . N 4 AR A 1 213 212 AR AR . O 4 AR A 1 214 213 AR AR . P 4 AR A 1 215 215 AR AR . Q 5 CL A 1 216 217 CL CL . R 6 HOH A 1 301 78 HOH HOH . R 6 HOH A 2 302 13 HOH HOH . R 6 HOH A 3 303 21 HOH HOH . R 6 HOH A 4 304 99 HOH HOH . R 6 HOH A 5 305 86 HOH HOH . R 6 HOH A 6 306 71 HOH HOH . R 6 HOH A 7 307 24 HOH HOH . R 6 HOH A 8 308 30 HOH HOH . R 6 HOH A 9 309 68 HOH HOH . R 6 HOH A 10 310 84 HOH HOH . R 6 HOH A 11 311 98 HOH HOH . R 6 HOH A 12 312 42 HOH HOH . R 6 HOH A 13 313 90 HOH HOH . R 6 HOH A 14 314 61 HOH HOH . R 6 HOH A 15 315 22 HOH HOH . R 6 HOH A 16 316 91 HOH HOH . R 6 HOH A 17 317 45 HOH HOH . R 6 HOH A 18 318 3 HOH HOH . R 6 HOH A 19 319 40 HOH HOH . R 6 HOH A 20 320 39 HOH HOH . R 6 HOH A 21 321 28 HOH HOH . R 6 HOH A 22 322 51 HOH HOH . R 6 HOH A 23 323 9 HOH HOH . R 6 HOH A 24 324 2 HOH HOH . R 6 HOH A 25 325 41 HOH HOH . R 6 HOH A 26 326 65 HOH HOH . R 6 HOH A 27 327 53 HOH HOH . R 6 HOH A 28 328 46 HOH HOH . R 6 HOH A 29 329 37 HOH HOH . R 6 HOH A 30 330 49 HOH HOH . R 6 HOH A 31 331 66 HOH HOH . R 6 HOH A 32 332 12 HOH HOH . R 6 HOH A 33 333 58 HOH HOH . R 6 HOH A 34 334 11 HOH HOH . R 6 HOH A 35 335 27 HOH HOH . R 6 HOH A 36 336 15 HOH HOH . R 6 HOH A 37 337 38 HOH HOH . R 6 HOH A 38 338 77 HOH HOH . R 6 HOH A 39 339 10 HOH HOH . R 6 HOH A 40 340 36 HOH HOH . R 6 HOH A 41 341 20 HOH HOH . R 6 HOH A 42 342 89 HOH HOH . R 6 HOH A 43 343 67 HOH HOH . R 6 HOH A 44 344 55 HOH HOH . R 6 HOH A 45 345 17 HOH HOH . R 6 HOH A 46 346 76 HOH HOH . R 6 HOH A 47 347 5 HOH HOH . R 6 HOH A 48 348 1 HOH HOH . R 6 HOH A 49 349 31 HOH HOH . R 6 HOH A 50 350 16 HOH HOH . R 6 HOH A 51 351 72 HOH HOH . R 6 HOH A 52 352 50 HOH HOH . R 6 HOH A 53 353 7 HOH HOH . R 6 HOH A 54 354 8 HOH HOH . R 6 HOH A 55 355 4 HOH HOH . R 6 HOH A 56 356 52 HOH HOH . R 6 HOH A 57 357 60 HOH HOH . R 6 HOH A 58 358 57 HOH HOH . R 6 HOH A 59 359 64 HOH HOH . R 6 HOH A 60 360 33 HOH HOH . R 6 HOH A 61 361 14 HOH HOH . R 6 HOH A 62 362 100 HOH HOH . R 6 HOH A 63 363 97 HOH HOH . R 6 HOH A 64 364 107 HOH HOH . R 6 HOH A 65 365 73 HOH HOH . R 6 HOH A 66 366 54 HOH HOH . R 6 HOH A 67 367 25 HOH HOH . R 6 HOH A 68 368 104 HOH HOH . R 6 HOH A 69 369 95 HOH HOH . R 6 HOH A 70 370 70 HOH HOH . R 6 HOH A 71 371 101 HOH HOH . R 6 HOH A 72 372 35 HOH HOH . R 6 HOH A 73 373 44 HOH HOH . R 6 HOH A 74 374 94 HOH HOH . R 6 HOH A 75 375 85 HOH HOH . R 6 HOH A 76 376 18 HOH HOH . R 6 HOH A 77 377 82 HOH HOH . R 6 HOH A 78 378 26 HOH HOH . R 6 HOH A 79 379 34 HOH HOH . R 6 HOH A 80 380 80 HOH HOH . R 6 HOH A 81 381 79 HOH HOH . R 6 HOH A 82 382 6 HOH HOH . R 6 HOH A 83 383 19 HOH HOH . R 6 HOH A 84 384 59 HOH HOH . R 6 HOH A 85 385 102 HOH HOH . R 6 HOH A 86 386 106 HOH HOH . R 6 HOH A 87 387 47 HOH HOH . R 6 HOH A 88 388 88 HOH HOH . R 6 HOH A 89 389 43 HOH HOH . R 6 HOH A 90 390 93 HOH HOH . R 6 HOH A 91 391 103 HOH HOH . R 6 HOH A 92 392 23 HOH HOH . R 6 HOH A 93 393 105 HOH HOH . R 6 HOH A 94 394 92 HOH HOH . R 6 HOH A 95 395 75 HOH HOH . R 6 HOH A 96 396 62 HOH HOH . R 6 HOH A 97 397 96 HOH HOH . R 6 HOH A 98 398 83 HOH HOH . R 6 HOH A 99 399 69 HOH HOH . R 6 HOH A 100 400 56 HOH HOH . R 6 HOH A 101 401 87 HOH HOH . R 6 HOH A 102 402 48 HOH HOH . R 6 HOH A 103 403 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 -16.068 -13.156 -17.219 1 24.04 ? CHA HEM 202 A 1 HETATM 2 C CHB HEM . . . C 3 -13.121 -9.665 -15.538 1 23.97 ? CHB HEM 202 A 1 HETATM 3 C CHC HEM . . . C 3 -9.482 -12.595 -16.413 1 24.72 ? CHC HEM 202 A 1 HETATM 4 C CHD HEM . . . C 3 -12.392 -16.295 -17.458 1 25.83 ? CHD HEM 202 A 1 HETATM 5 C C1A HEM . . . C 3 -15.578 -11.977 -16.75 1 23.62 ? C1A HEM 202 A 1 HETATM 6 C C2A HEM . . . C 3 -16.4 -10.884 -16.442 1 26.64 ? C2A HEM 202 A 1 HETATM 7 C C3A HEM . . . C 3 -15.572 -9.899 -15.949 1 24.96 ? C3A HEM 202 A 1 HETATM 8 C C4A HEM . . . C 3 -14.255 -10.377 -15.966 1 25.74 ? C4A HEM 202 A 1 HETATM 9 C CMA HEM . . . C 3 -15.991 -8.55 -15.476 1 28.72 ? CMA HEM 202 A 1 HETATM 10 C CAA HEM . . . C 3 -17.92 -10.744 -16.578 1 27.43 ? CAA HEM 202 A 1 HETATM 11 C CBA HEM . . . C 3 -18.496 -10.772 -15.158 1 24.37 ? CBA HEM 202 A 1 HETATM 12 C CGA HEM . . . C 3 -18.432 -12.186 -14.668 1 30.6 ? CGA HEM 202 A 1 HETATM 13 O O1A HEM . . . C 3 -18.787 -13.152 -15.366 1 30.71 ? O1A HEM 202 A 1 HETATM 14 O O2A HEM . . . C 3 -18.046 -12.541 -13.531 1 29.8 ? O2A HEM 202 A 1 HETATM 15 C C1B HEM . . . C 3 -11.857 -10.179 -15.626 1 23.48 ? C1B HEM 202 A 1 HETATM 16 C C2B HEM . . . C 3 -10.641 -9.439 -15.323 1 27.92 ? C2B HEM 202 A 1 HETATM 17 C C3B HEM . . . C 3 -9.598 -10.268 -15.594 1 25.12 ? C3B HEM 202 A 1 HETATM 18 C C4B HEM . . . C 3 -10.221 -11.501 -16.12 1 24.15 ? C4B HEM 202 A 1 HETATM 19 C CMB HEM . . . C 3 -10.657 -8.032 -14.805 1 30.59 ? CMB HEM 202 A 1 HETATM 20 C CAB HEM . . . C 3 -8.141 -10.186 -15.541 1 29.02 ? CAB HEM 202 A 1 HETATM 21 C CBB HEM . . . C 3 -7.548 -9.029 -15.547 1 33.57 ? CBB HEM 202 A 1 HETATM 22 C C1C HEM . . . C 3 -9.911 -13.829 -16.771 1 26.1 ? C1C HEM 202 A 1 HETATM 23 C C2C HEM . . . C 3 -9.093 -14.879 -17.097 1 28.63 ? C2C HEM 202 A 1 HETATM 24 C C3C HEM . . . C 3 -9.934 -15.948 -17.351 1 26.17 ? C3C HEM 202 A 1 HETATM 25 C C4C HEM . . . C 3 -11.269 -15.512 -17.2 1 27.24 ? C4C HEM 202 A 1 HETATM 26 C CMC HEM . . . C 3 -7.572 -14.927 -17.195 1 32.86 ? CMC HEM 202 A 1 HETATM 27 C CAC HEM . . . C 3 -9.669 -17.322 -17.768 1 26.87 ? CAC HEM 202 A 1 HETATM 28 C CBC HEM . . . C 3 -8.533 -17.951 -17.924 1 36.53 ? CBC HEM 202 A 1 HETATM 29 C C1D HEM . . . C 3 -13.612 -15.587 -17.493 1 22.72 ? C1D HEM 202 A 1 HETATM 30 C C2D HEM . . . C 3 -14.853 -16.306 -17.877 1 25.08 ? C2D HEM 202 A 1 HETATM 31 C C3D HEM . . . C 3 -15.862 -15.505 -17.809 1 25.45 ? C3D HEM 202 A 1 HETATM 32 C C4D HEM . . . C 3 -15.25 -14.233 -17.395 1 25.37 ? C4D HEM 202 A 1 HETATM 33 C CMD HEM . . . C 3 -14.924 -17.75 -18.177 1 26.37 ? CMD HEM 202 A 1 HETATM 34 C CAD HEM . . . C 3 -17.313 -15.861 -18.184 1 25.71 ? CAD HEM 202 A 1 HETATM 35 C CBD HEM . . . C 3 -17.533 -15.15 -19.508 1 36.63 ? CBD HEM 202 A 1 HETATM 36 C CGD HEM . . . C 3 -18.745 -15.771 -20.164 1 44.13 ? CGD HEM 202 A 1 HETATM 37 O O1D HEM . . . C 3 -19.781 -15.107 -19.997 1 49.06 ? O1D HEM 202 A 1 HETATM 38 O O2D HEM . . . C 3 -18.684 -16.905 -20.697 1 47.32 ? O2D HEM 202 A 1 HETATM 39 N NA HEM . . . C 3 -14.229 -11.699 -16.424 1 22.94 ? NA HEM 202 A 1 HETATM 40 N NB HEM . . . C 3 -11.521 -11.327 -16.086 1 22.16 ? NB HEM 202 A 1 HETATM 41 N NC HEM . . . C 3 -11.245 -14.186 -16.857 1 25.25 ? NC HEM 202 A 1 HETATM 42 N ND HEM . . . C 3 -13.919 -14.361 -17.175 1 24.33 ? ND HEM 202 A 1 HETATM 43 FE FE HEM . . . C 3 -12.75 -12.921 -16.615 1 26.01 ? FE HEM 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #