data_6R1X # _model_server_result.job_id M0insxSky3aFfQCfQZPLuQ _model_server_result.datetime_utc '2024-12-04 15:54:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 6R1X # _exptl.entry_id 6R1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.203 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-methyl-but-2-enamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R1X _cell.length_a 56.333 _cell.length_b 58.675 _cell.length_c 89.272 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A SG CYS 28 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 A SG CYS 91 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A SG CYS 94 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 B SG CYS 25 B CYS 24 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 B SG CYS 28 B CYS 27 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 B SG CYS 91 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 B SG CYS 94 B CYS 93 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc9 C SG CYS 25 C CYS 24 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 C SG CYS 28 C CYS 27 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 C SG CYS 91 C CYS 90 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc12 C SG CYS 94 C CYS 93 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'C9 H12 N2 O3' _chem_comp.formula_weight 196.203 _chem_comp.id JPQ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-methyl-but-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 JPQ doub 173 n n N1 C1 JPQ sing 174 n n N1 C2 JPQ sing 175 n n C1 C4 JPQ sing 176 n n C2 O2 JPQ doub 177 n n C2 C3 JPQ sing 178 n n N2 C4 JPQ sing 179 n n N2 C5 JPQ sing 180 n n C4 C3 JPQ sing 181 n n C6 C5 JPQ sing 182 n n C6 C7 JPQ doub 183 n n C5 O3 JPQ doub 184 n n C8 C7 JPQ sing 185 n n C7 C9 JPQ sing 186 n n C4 H1 JPQ sing 187 n n C6 H2 JPQ sing 188 n n C8 H3 JPQ sing 189 n n C8 H4 JPQ sing 190 n n C8 H5 JPQ sing 191 n n C9 H6 JPQ sing 192 n n C9 H7 JPQ sing 193 n n C9 H8 JPQ sing 194 n n N1 H9 JPQ sing 195 n n N2 H10 JPQ sing 196 n n C3 H11 JPQ sing 197 n n C3 H12 JPQ sing 198 n n # _atom_sites.entry_id 6R1X _atom_sites.fract_transf_matrix[1][1] 0.017752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 201 ZN ZN . E 3 JPQ A 1 202 202 JPQ JPQ . F 2 ZN B 1 201 201 ZN ZN . G 3 JPQ B 1 202 202 JPQ JPQ . H 2 ZN C 1 201 201 ZN ZN . I 4 HOH A 1 301 301 HOH HOH . I 4 HOH A 2 302 302 HOH HOH . I 4 HOH A 3 303 303 HOH HOH . I 4 HOH A 4 304 304 HOH HOH . I 4 HOH A 5 305 305 HOH HOH . I 4 HOH A 6 306 309 HOH HOH . I 4 HOH A 7 307 306 HOH HOH . I 4 HOH A 8 308 307 HOH HOH . I 4 HOH A 9 309 308 HOH HOH . I 4 HOH A 10 310 311 HOH HOH . I 4 HOH A 11 311 312 HOH HOH . I 4 HOH A 12 312 313 HOH HOH . I 4 HOH A 13 313 314 HOH HOH . I 4 HOH A 14 314 315 HOH HOH . I 4 HOH A 15 315 310 HOH HOH . I 4 HOH A 16 316 317 HOH HOH . I 4 HOH A 17 317 318 HOH HOH . I 4 HOH A 18 318 319 HOH HOH . I 4 HOH A 19 319 320 HOH HOH . I 4 HOH A 20 320 321 HOH HOH . I 4 HOH A 21 321 353 HOH HOH . I 4 HOH A 22 322 322 HOH HOH . I 4 HOH A 23 323 323 HOH HOH . I 4 HOH A 24 324 324 HOH HOH . I 4 HOH A 25 325 316 HOH HOH . I 4 HOH A 26 326 325 HOH HOH . I 4 HOH A 27 327 326 HOH HOH . I 4 HOH A 28 328 327 HOH HOH . I 4 HOH A 29 329 328 HOH HOH . I 4 HOH A 30 330 329 HOH HOH . I 4 HOH A 31 331 330 HOH HOH . I 4 HOH A 32 332 331 HOH HOH . I 4 HOH A 33 333 332 HOH HOH . I 4 HOH A 34 334 333 HOH HOH . I 4 HOH A 35 335 334 HOH HOH . I 4 HOH A 36 336 335 HOH HOH . I 4 HOH A 37 337 336 HOH HOH . I 4 HOH A 38 338 337 HOH HOH . I 4 HOH A 39 339 338 HOH HOH . I 4 HOH A 40 340 339 HOH HOH . I 4 HOH A 41 341 340 HOH HOH . I 4 HOH A 42 342 341 HOH HOH . I 4 HOH A 43 343 342 HOH HOH . I 4 HOH A 44 344 343 HOH HOH . I 4 HOH A 45 345 344 HOH HOH . I 4 HOH A 46 346 345 HOH HOH . I 4 HOH A 47 347 346 HOH HOH . I 4 HOH A 48 348 347 HOH HOH . I 4 HOH A 49 349 348 HOH HOH . I 4 HOH A 50 350 349 HOH HOH . I 4 HOH A 51 351 350 HOH HOH . I 4 HOH A 52 352 351 HOH HOH . I 4 HOH A 53 353 352 HOH HOH . I 4 HOH A 54 354 354 HOH HOH . I 4 HOH A 55 355 355 HOH HOH . I 4 HOH A 56 356 356 HOH HOH . I 4 HOH A 57 357 357 HOH HOH . I 4 HOH A 58 358 358 HOH HOH . I 4 HOH A 59 359 359 HOH HOH . I 4 HOH A 60 360 360 HOH HOH . I 4 HOH A 61 361 361 HOH HOH . I 4 HOH A 62 362 362 HOH HOH . I 4 HOH A 63 363 363 HOH HOH . J 4 HOH B 1 301 301 HOH HOH . J 4 HOH B 2 302 302 HOH HOH . J 4 HOH B 3 303 303 HOH HOH . J 4 HOH B 4 304 304 HOH HOH . J 4 HOH B 5 305 305 HOH HOH . J 4 HOH B 6 306 306 HOH HOH . J 4 HOH B 7 307 307 HOH HOH . J 4 HOH B 8 308 308 HOH HOH . J 4 HOH B 9 309 309 HOH HOH . J 4 HOH B 10 310 310 HOH HOH . J 4 HOH B 11 311 311 HOH HOH . J 4 HOH B 12 312 312 HOH HOH . J 4 HOH B 13 313 313 HOH HOH . J 4 HOH B 14 314 314 HOH HOH . J 4 HOH B 15 315 315 HOH HOH . J 4 HOH B 16 316 316 HOH HOH . J 4 HOH B 17 317 317 HOH HOH . J 4 HOH B 18 318 318 HOH HOH . J 4 HOH B 19 319 319 HOH HOH . J 4 HOH B 20 320 320 HOH HOH . J 4 HOH B 21 321 321 HOH HOH . J 4 HOH B 22 322 322 HOH HOH . J 4 HOH B 23 323 323 HOH HOH . J 4 HOH B 24 324 324 HOH HOH . J 4 HOH B 25 325 325 HOH HOH . J 4 HOH B 26 326 326 HOH HOH . J 4 HOH B 27 327 327 HOH HOH . J 4 HOH B 28 328 328 HOH HOH . J 4 HOH B 29 329 329 HOH HOH . J 4 HOH B 30 330 330 HOH HOH . J 4 HOH B 31 331 331 HOH HOH . J 4 HOH B 32 332 332 HOH HOH . J 4 HOH B 33 333 333 HOH HOH . J 4 HOH B 34 334 334 HOH HOH . J 4 HOH B 35 335 335 HOH HOH . J 4 HOH B 36 336 336 HOH HOH . J 4 HOH B 37 337 337 HOH HOH . J 4 HOH B 38 338 338 HOH HOH . J 4 HOH B 39 339 339 HOH HOH . J 4 HOH B 40 340 340 HOH HOH . J 4 HOH B 41 341 341 HOH HOH . J 4 HOH B 42 342 342 HOH HOH . J 4 HOH B 43 343 343 HOH HOH . J 4 HOH B 44 344 344 HOH HOH . J 4 HOH B 45 345 345 HOH HOH . J 4 HOH B 46 346 346 HOH HOH . J 4 HOH B 47 347 347 HOH HOH . J 4 HOH B 48 348 348 HOH HOH . J 4 HOH B 49 349 349 HOH HOH . J 4 HOH B 50 350 350 HOH HOH . J 4 HOH B 51 351 351 HOH HOH . J 4 HOH B 52 352 352 HOH HOH . J 4 HOH B 53 353 353 HOH HOH . J 4 HOH B 54 354 354 HOH HOH . J 4 HOH B 55 355 355 HOH HOH . J 4 HOH B 56 356 356 HOH HOH . J 4 HOH B 57 357 357 HOH HOH . J 4 HOH B 58 358 358 HOH HOH . J 4 HOH B 59 359 359 HOH HOH . J 4 HOH B 60 360 360 HOH HOH . J 4 HOH B 61 361 361 HOH HOH . J 4 HOH B 62 362 362 HOH HOH . J 4 HOH B 63 363 363 HOH HOH . J 4 HOH B 64 364 364 HOH HOH . J 4 HOH B 65 365 365 HOH HOH . J 4 HOH B 66 366 366 HOH HOH . J 4 HOH B 67 367 367 HOH HOH . J 4 HOH B 68 368 368 HOH HOH . J 4 HOH B 69 369 369 HOH HOH . J 4 HOH B 70 370 370 HOH HOH . J 4 HOH B 71 371 371 HOH HOH . J 4 HOH B 72 372 372 HOH HOH . J 4 HOH B 73 373 373 HOH HOH . J 4 HOH B 74 374 374 HOH HOH . J 4 HOH B 75 375 375 HOH HOH . J 4 HOH B 76 376 376 HOH HOH . J 4 HOH B 77 377 377 HOH HOH . J 4 HOH B 78 378 378 HOH HOH . J 4 HOH B 79 379 379 HOH HOH . J 4 HOH B 80 380 380 HOH HOH . J 4 HOH B 81 381 381 HOH HOH . J 4 HOH B 82 382 382 HOH HOH . J 4 HOH B 83 383 383 HOH HOH . J 4 HOH B 84 384 384 HOH HOH . J 4 HOH B 85 385 385 HOH HOH . J 4 HOH B 86 386 386 HOH HOH . K 4 HOH C 1 301 301 HOH HOH . K 4 HOH C 2 302 302 HOH HOH . K 4 HOH C 3 303 303 HOH HOH . K 4 HOH C 4 304 304 HOH HOH . K 4 HOH C 5 305 305 HOH HOH . K 4 HOH C 6 306 306 HOH HOH . K 4 HOH C 7 307 307 HOH HOH . K 4 HOH C 8 308 308 HOH HOH . K 4 HOH C 9 309 309 HOH HOH . K 4 HOH C 10 310 310 HOH HOH . K 4 HOH C 11 311 311 HOH HOH . K 4 HOH C 12 312 314 HOH HOH . K 4 HOH C 13 313 312 HOH HOH . K 4 HOH C 14 314 313 HOH HOH . K 4 HOH C 15 315 315 HOH HOH . K 4 HOH C 16 316 316 HOH HOH . K 4 HOH C 17 317 317 HOH HOH . K 4 HOH C 18 318 318 HOH HOH . K 4 HOH C 19 319 319 HOH HOH . K 4 HOH C 20 320 320 HOH HOH . K 4 HOH C 21 321 321 HOH HOH . K 4 HOH C 22 322 322 HOH HOH . K 4 HOH C 23 323 323 HOH HOH . K 4 HOH C 24 324 324 HOH HOH . K 4 HOH C 25 325 325 HOH HOH . K 4 HOH C 26 326 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JPQ . . . E 3 23.755 17.376 -6.812 1 27.36 ? C4 JPQ 202 A 1 HETATM 2 C C5 JPQ . . . E 3 25.445 19.061 -6.419 1 31.28 ? C5 JPQ 202 A 1 HETATM 3 C C6 JPQ . . . E 3 25.804 20.488 -6.557 1 35.65 ? C6 JPQ 202 A 1 HETATM 4 C C7 JPQ . . . E 3 26.667 21.17 -5.783 1 38.46 ? C7 JPQ 202 A 1 HETATM 5 C C8 JPQ . . . E 3 27.103 22.572 -6.116 1 40.99 ? C8 JPQ 202 A 1 HETATM 6 C C9 JPQ . . . E 3 27.292 20.635 -4.518 1 40.58 ? C9 JPQ 202 A 1 HETATM 7 N N1 JPQ . . . E 3 22.859 15.786 -8.25 1 26.34 ? N1 JPQ 202 A 1 HETATM 8 N N2 JPQ . . . E 3 24.285 18.695 -6.987 1 29.95 ? N2 JPQ 202 A 1 HETATM 9 C C3 JPQ . . . E 3 22.236 17.327 -6.613 1 26.77 ? C3 JPQ 202 A 1 HETATM 10 O O1 JPQ . . . E 3 25.012 16.491 -8.712 1 27.41 ? O1 JPQ 202 A 1 HETATM 11 C C1 JPQ . . . E 3 23.989 16.523 -8.04 1 28.1 ? C1 JPQ 202 A 1 HETATM 12 C C2 JPQ . . . E 3 21.804 16.155 -7.447 1 26.49 ? C2 JPQ 202 A 1 HETATM 13 O O2 JPQ . . . E 3 20.76 15.539 -7.373 1 24.3 ? O2 JPQ 202 A 1 HETATM 14 O O3 JPQ . . . E 3 26.159 18.256 -5.826 1 31.3 ? O3 JPQ 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #