data_6R2U # _model_server_result.job_id h3VrtLwoOpPAIBEzsL_smg _model_server_result.datetime_utc '2024-10-14 08:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":306}' # _entry.id 6R2U # _exptl.entry_id 6R2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.592 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R2U _cell.length_a 167.015 _cell.length_b 167.015 _cell.length_c 204.948 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,I,J,K,DA 1 1 B,L,M,N,O,P,Q,EA 2 1 C,R,S,T,U,FA 3 1 D,V,W,X,Y,GA 4 1 E,Z,AA,HA 5 1 F,BA,CA,IA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 V N N ? 3 Z N N ? 3 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 103 1_555 A SG CYS 167 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 206 A CYS 205 1_555 A SG CYS 261 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? disulf ? disulf3 B SG CYS 104 B CYS 103 1_555 B SG CYS 167 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? disulf ? disulf4 B SG CYS 206 B CYS 205 1_555 B SG CYS 261 B CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf5 C SG CYS 104 C CYS 103 1_555 C SG CYS 167 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? disulf ? disulf6 C SG CYS 206 C CYS 205 1_555 C SG CYS 261 C CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf7 D SG CYS 104 D CYS 103 1_555 D SG CYS 167 D CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf8 D SG CYS 206 D CYS 205 1_555 D SG CYS 261 D CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf9 E SG CYS 104 E CYS 103 1_555 E SG CYS 167 E CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf10 E SG CYS 206 E CYS 205 1_555 E SG CYS 261 E CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf11 F SG CYS 104 F CYS 103 1_555 F SG CYS 167 F CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf12 F SG CYS 206 F CYS 205 1_555 F SG CYS 261 F CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C23 H34 N2 O4 S' _chem_comp.formula_weight 434.592 _chem_comp.id 11D _chem_comp.mon_nstd_flag . _chem_comp.name '11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '11-(Dansylamino)undecanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 11D doub 1 n y C1 C6 11D sing 2 n y C1 H1 11D sing 3 n n C7 C2 11D sing 4 n y C3 C2 11D sing 5 n y C10 C3 11D sing 6 n y C3 C4 11D doub 7 n y S14 C4 11D sing 8 n n C4 C5 11D sing 9 n y C5 C6 11D doub 10 n y C5 H5 11D sing 11 n n C6 H6 11D sing 12 n n C8 C7 11D doub 13 n y C7 N11 11D sing 14 n n C9 C8 11D sing 15 n y C8 H8 11D sing 16 n n C9 C10 11D doub 17 n y C9 H9 11D sing 18 n n C10 H10 11D sing 19 n n C13 N11 11D sing 20 n n N11 C12 11D sing 21 n n C12 H12 11D sing 22 n n C12 H12A 11D sing 23 n n C12 H12B 11D sing 24 n n C13 H13 11D sing 25 n n C13 H13A 11D sing 26 n n C13 H13B 11D sing 27 n n N17 S14 11D sing 28 n n S14 O16 11D doub 29 n n S14 O15 11D doub 30 n n C18 N17 11D sing 31 n n N17 HN17 11D sing 32 n n C18 C19 11D sing 33 n n C18 H18 11D sing 34 n n C18 H18A 11D sing 35 n n C20 C19 11D sing 36 n n C19 H19 11D sing 37 n n C19 H19A 11D sing 38 n n C20 C21 11D sing 39 n n C20 H20 11D sing 40 n n C20 H20A 11D sing 41 n n C22 C21 11D sing 42 n n C21 H21 11D sing 43 n n C21 H21A 11D sing 44 n n C23 C22 11D sing 45 n n C22 H22 11D sing 46 n n C22 H22A 11D sing 47 n n C24 C23 11D sing 48 n n C23 H23 11D sing 49 n n C23 H23A 11D sing 50 n n C25 C24 11D sing 51 n n C24 H24 11D sing 52 n n C24 H24A 11D sing 53 n n C26 C25 11D sing 54 n n C25 H25 11D sing 55 n n C25 H25A 11D sing 56 n n C27 C26 11D sing 57 n n C26 H26 11D sing 58 n n C26 H26A 11D sing 59 n n C28 C27 11D sing 60 n n C27 H27 11D sing 61 n n C27 H27A 11D sing 62 n n O29 C28 11D doub 63 n n C28 O30 11D sing 64 n n O30 HO30 11D sing 65 n n # _atom_sites.entry_id 6R2U _atom_sites.fract_transf_matrix[1][1] 0.005987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 301 4 SO4 SO4 . H 2 SO4 A 1 302 5 SO4 SO4 . I 2 SO4 A 1 303 7 SO4 SO4 . J 2 SO4 A 1 304 9 SO4 SO4 . K 3 11D A 1 305 7 11D 11D . L 3 11D B 1 301 301 11D 11D . M 4 AZI B 1 302 3 AZI AZI . N 2 SO4 B 1 303 11 SO4 SO4 . O 2 SO4 B 1 304 16 SO4 SO4 . P 3 11D B 1 305 6 11D 11D . Q 3 11D B 1 306 8 11D 11D . R 3 11D C 1 301 303 11D 11D . S 2 SO4 C 1 302 3 SO4 SO4 . T 2 SO4 C 1 303 6 SO4 SO4 . U 2 SO4 C 1 304 12 SO4 SO4 . V 3 11D D 1 301 304 11D 11D . W 2 SO4 D 1 302 10 SO4 SO4 . X 2 SO4 D 1 303 13 SO4 SO4 . Y 2 SO4 D 1 304 15 SO4 SO4 . Z 3 11D E 1 301 304 11D 11D . AA 2 SO4 E 1 302 14 SO4 SO4 . BA 3 11D F 1 301 304 11D 11D . CA 2 SO4 F 1 302 8 SO4 SO4 . DA 5 HOH A 1 401 51 HOH HOH . DA 5 HOH A 2 402 14 HOH HOH . DA 5 HOH A 3 403 35 HOH HOH . DA 5 HOH A 4 404 100 HOH HOH . DA 5 HOH A 5 405 114 HOH HOH . DA 5 HOH A 6 406 143 HOH HOH . DA 5 HOH A 7 407 43 HOH HOH . DA 5 HOH A 8 408 88 HOH HOH . DA 5 HOH A 9 409 4 HOH HOH . DA 5 HOH A 10 410 30 HOH HOH . DA 5 HOH A 11 411 26 HOH HOH . DA 5 HOH A 12 412 122 HOH HOH . DA 5 HOH A 13 413 33 HOH HOH . DA 5 HOH A 14 414 58 HOH HOH . DA 5 HOH A 15 415 92 HOH HOH . DA 5 HOH A 16 416 147 HOH HOH . DA 5 HOH A 17 417 64 HOH HOH . DA 5 HOH A 18 418 57 HOH HOH . DA 5 HOH A 19 419 18 HOH HOH . DA 5 HOH A 20 420 36 HOH HOH . DA 5 HOH A 21 421 70 HOH HOH . DA 5 HOH A 22 422 136 HOH HOH . DA 5 HOH A 23 423 95 HOH HOH . DA 5 HOH A 24 424 5 HOH HOH . DA 5 HOH A 25 425 77 HOH HOH . DA 5 HOH A 26 426 12 HOH HOH . DA 5 HOH A 27 427 120 HOH HOH . DA 5 HOH A 28 428 83 HOH HOH . DA 5 HOH A 29 429 52 HOH HOH . DA 5 HOH A 30 430 111 HOH HOH . DA 5 HOH A 31 431 110 HOH HOH . DA 5 HOH A 32 432 142 HOH HOH . DA 5 HOH A 33 433 144 HOH HOH . DA 5 HOH A 34 434 73 HOH HOH . EA 5 HOH B 1 401 97 HOH HOH . EA 5 HOH B 2 402 2 HOH HOH . EA 5 HOH B 3 403 40 HOH HOH . EA 5 HOH B 4 404 31 HOH HOH . EA 5 HOH B 5 405 42 HOH HOH . EA 5 HOH B 6 406 108 HOH HOH . EA 5 HOH B 7 407 62 HOH HOH . EA 5 HOH B 8 408 27 HOH HOH . EA 5 HOH B 9 409 37 HOH HOH . EA 5 HOH B 10 410 29 HOH HOH . EA 5 HOH B 11 411 79 HOH HOH . EA 5 HOH B 12 412 20 HOH HOH . EA 5 HOH B 13 413 145 HOH HOH . EA 5 HOH B 14 414 46 HOH HOH . EA 5 HOH B 15 415 23 HOH HOH . EA 5 HOH B 16 416 32 HOH HOH . EA 5 HOH B 17 417 115 HOH HOH . EA 5 HOH B 18 418 60 HOH HOH . EA 5 HOH B 19 419 138 HOH HOH . EA 5 HOH B 20 420 72 HOH HOH . EA 5 HOH B 21 421 39 HOH HOH . FA 5 HOH C 1 401 45 HOH HOH . FA 5 HOH C 2 402 6 HOH HOH . FA 5 HOH C 3 403 22 HOH HOH . FA 5 HOH C 4 404 53 HOH HOH . FA 5 HOH C 5 405 74 HOH HOH . FA 5 HOH C 6 406 80 HOH HOH . FA 5 HOH C 7 407 8 HOH HOH . FA 5 HOH C 8 408 146 HOH HOH . FA 5 HOH C 9 409 28 HOH HOH . FA 5 HOH C 10 410 25 HOH HOH . FA 5 HOH C 11 411 9 HOH HOH . FA 5 HOH C 12 412 59 HOH HOH . FA 5 HOH C 13 413 116 HOH HOH . FA 5 HOH C 14 414 55 HOH HOH . FA 5 HOH C 15 415 67 HOH HOH . FA 5 HOH C 16 416 117 HOH HOH . FA 5 HOH C 17 417 50 HOH HOH . GA 5 HOH D 1 401 76 HOH HOH . GA 5 HOH D 2 402 87 HOH HOH . GA 5 HOH D 3 403 81 HOH HOH . GA 5 HOH D 4 404 21 HOH HOH . GA 5 HOH D 5 405 17 HOH HOH . GA 5 HOH D 6 406 90 HOH HOH . GA 5 HOH D 7 407 86 HOH HOH . GA 5 HOH D 8 408 54 HOH HOH . GA 5 HOH D 9 409 127 HOH HOH . GA 5 HOH D 10 410 75 HOH HOH . GA 5 HOH D 11 411 3 HOH HOH . GA 5 HOH D 12 412 148 HOH HOH . GA 5 HOH D 13 413 19 HOH HOH . GA 5 HOH D 14 414 82 HOH HOH . GA 5 HOH D 15 415 89 HOH HOH . GA 5 HOH D 16 416 61 HOH HOH . GA 5 HOH D 17 417 141 HOH HOH . GA 5 HOH D 18 418 41 HOH HOH . HA 5 HOH E 1 401 34 HOH HOH . HA 5 HOH E 2 402 66 HOH HOH . HA 5 HOH E 3 403 137 HOH HOH . HA 5 HOH E 4 404 44 HOH HOH . HA 5 HOH E 5 405 48 HOH HOH . HA 5 HOH E 6 406 94 HOH HOH . HA 5 HOH E 7 407 15 HOH HOH . HA 5 HOH E 8 408 107 HOH HOH . HA 5 HOH E 9 409 140 HOH HOH . HA 5 HOH E 10 410 123 HOH HOH . IA 5 HOH F 1 401 109 HOH HOH . IA 5 HOH F 2 402 131 HOH HOH . IA 5 HOH F 3 403 85 HOH HOH . IA 5 HOH F 4 404 7 HOH HOH . IA 5 HOH F 5 405 1 HOH HOH . IA 5 HOH F 6 406 56 HOH HOH . IA 5 HOH F 7 407 10 HOH HOH . IA 5 HOH F 8 408 129 HOH HOH . IA 5 HOH F 9 409 68 HOH HOH . IA 5 HOH F 10 410 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 11D . . . Q 3 -38.271 -59.571 55.956 1 114.02 ? C1 11D 306 B 1 HETATM 2 C C2 11D . . . Q 3 -37.811 -58.223 55.97 1 112.15 ? C2 11D 306 B 1 HETATM 3 C C3 11D . . . Q 3 -37.751 -57.535 57.235 1 113.41 ? C3 11D 306 B 1 HETATM 4 C C4 11D . . . Q 3 -38.152 -58.26 58.413 1 111.68 ? C4 11D 306 B 1 HETATM 5 C C5 11D . . . Q 3 -38.586 -59.556 58.33 1 119.01 ? C5 11D 306 B 1 HETATM 6 C C6 11D . . . Q 3 -38.635 -60.205 57.107 1 120.65 ? C6 11D 306 B 1 HETATM 7 C C7 11D . . . Q 3 -37.393 -57.532 54.784 1 116.87 ? C7 11D 306 B 1 HETATM 8 C C8 11D . . . Q 3 -36.918 -56.228 54.872 1 107.78 ? C8 11D 306 B 1 HETATM 9 C C9 11D . . . Q 3 -36.872 -55.572 56.091 1 108.2 ? C9 11D 306 B 1 HETATM 10 C C10 11D . . . Q 3 -37.284 -56.185 57.242 1 112.15 ? C10 11D 306 B 1 HETATM 11 N N11 11D . . . Q 3 -37.527 -58.213 53.513 1 126.83 ? N11 11D 306 B 1 HETATM 12 C C12 11D . . . Q 3 -36.575 -59.275 53.244 1 127.02 ? C12 11D 306 B 1 HETATM 13 C C13 11D . . . Q 3 -38.002 -57.452 52.367 1 129.38 ? C13 11D 306 B 1 HETATM 14 S S14 11D . . . Q 3 -38.076 -57.543 60.036 1 94.85 ? S14 11D 306 B 1 HETATM 15 O O15 11D . . . Q 3 -37.916 -58.606 60.98 1 92.84 ? O15 11D 306 B 1 HETATM 16 O O16 11D . . . Q 3 -37.144 -56.458 60.043 1 104.04 ? O16 11D 306 B 1 HETATM 17 N N17 11D . . . Q 3 -39.539 -56.913 60.294 1 89.94 ? N17 11D 306 B 1 HETATM 18 C C18 11D . . . Q 3 -39.72 -55.554 60.812 1 87.77 ? C18 11D 306 B 1 HETATM 19 C C19 11D . . . Q 3 -39.622 -54.499 59.718 1 88.2 ? C19 11D 306 B 1 HETATM 20 C C20 11D . . . Q 3 -40.405 -54.804 58.448 1 88.21 ? C20 11D 306 B 1 HETATM 21 C C21 11D . . . Q 3 -40.179 -53.771 57.362 1 89.61 ? C21 11D 306 B 1 HETATM 22 C C22 11D . . . Q 3 -40.755 -54.122 56.001 1 89.17 ? C22 11D 306 B 1 HETATM 23 C C23 11D . . . Q 3 -42.178 -53.634 55.77 1 88.53 ? C23 11D 306 B 1 HETATM 24 C C24 11D . . . Q 3 -42.549 -53.57 54.301 1 88.41 ? C24 11D 306 B 1 HETATM 25 C C25 11D . . . Q 3 -44.047 -53.503 53.992 1 82.44 ? C25 11D 306 B 1 HETATM 26 C C26 11D . . . Q 3 -44.67 -54.861 53.802 1 78.72 ? C26 11D 306 B 1 HETATM 27 C C27 11D . . . Q 3 -45.898 -54.908 52.913 1 72.36 ? C27 11D 306 B 1 HETATM 28 C C28 11D . . . Q 3 -47.204 -55.125 53.619 1 75.88 ? C28 11D 306 B 1 HETATM 29 O O29 11D . . . Q 3 -47.335 -55.739 54.689 1 75.25 ? O29 11D 306 B 1 HETATM 30 O O30 11D . . . Q 3 -48.199 -54.589 52.945 1 63.99 ? O30 11D 306 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #