data_6R31 # _model_server_result.job_id F-Ttm73edWA6G8d1eomSSg _model_server_result.datetime_utc '2025-02-20 05:16:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":210}' # _entry.id 6R31 # _exptl.entry_id 6R31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6R31 _cell.length_a 104.91 _cell.length_b 104.91 _cell.length_c 39.511 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BGC BGC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 BGC BGC C1 O1 . O3 HO3 . sing 5 ? 2 6 5 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC C 1 BGC 2 n B BGC 2 B 2 BGC C 2 BGC 2 n B BGC 3 B 3 BGC C 3 BGC 2 n B BGC 4 B 4 BGC C 4 BGC 2 n B BGC 5 B 5 BGC C 5 BGC 2 n B BGC 6 B 6 BGC C 6 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale2 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale3 B O4 BGC . B BGC 3 1_555 B C1 BGC . B BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale4 B O3 BGC . B BGC 4 1_555 B C1 BGC . B BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale5 B O4 BGC . B BGC 5 1_555 B C1 BGC . B BGC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? metalc ? metalc1 A O ASP 12 A ASP 12 1_555 C CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A OE2 GLU 14 A GLU 14 1_555 C CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc3 A O THR 38 A THR 38 1_555 C CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A O ASN 40 A ASN 40 1_555 C CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc5 A OE1 GLU 91 A GLU 91 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 A OE2 GLU 91 A GLU 91 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc7 A OE1 GLU 101 A GLU 101 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc8 A OD1 ASP 135 A ASP 135 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc9 A OD2 ASP 135 A ASP 135 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 A OG SER 137 A SER 137 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc11 A O THR 139 A THR 139 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 A OD2 ASP 141 A ASP 141 1_555 D CA CA . A CA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc13 A OD1 ASP 163 A ASP 163 1_555 C CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc14 A OD2 ASP 163 A ASP 163 1_555 C CA CA . A CA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.045 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 271 n n P O2 PO4 sing 272 n n P O3 PO4 sing 273 n n P O4 PO4 sing 274 n n # _atom_sites.entry_id 6R31 _atom_sites.fract_transf_matrix[1][1] 0.009532 _atom_sites.fract_transf_matrix[1][2] 0.005503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 207 1 CA CA . D 3 CA A 1 208 2 CA CA . E 4 PO4 A 1 209 1 PO4 PO4 . F 4 PO4 A 1 210 2 PO4 PO4 . G 5 HOH A 1 301 21 HOH HOH . G 5 HOH A 2 302 46 HOH HOH . G 5 HOH A 3 303 9 HOH HOH . G 5 HOH A 4 304 56 HOH HOH . G 5 HOH A 5 305 41 HOH HOH . G 5 HOH A 6 306 15 HOH HOH . G 5 HOH A 7 307 40 HOH HOH . G 5 HOH A 8 308 31 HOH HOH . G 5 HOH A 9 309 18 HOH HOH . G 5 HOH A 10 310 52 HOH HOH . G 5 HOH A 11 311 3 HOH HOH . G 5 HOH A 12 312 43 HOH HOH . G 5 HOH A 13 313 32 HOH HOH . G 5 HOH A 14 314 26 HOH HOH . G 5 HOH A 15 315 7 HOH HOH . G 5 HOH A 16 316 6 HOH HOH . G 5 HOH A 17 317 57 HOH HOH . G 5 HOH A 18 318 42 HOH HOH . G 5 HOH A 19 319 29 HOH HOH . G 5 HOH A 20 320 23 HOH HOH . G 5 HOH A 21 321 1 HOH HOH . G 5 HOH A 22 322 27 HOH HOH . G 5 HOH A 23 323 22 HOH HOH . G 5 HOH A 24 324 36 HOH HOH . G 5 HOH A 25 325 16 HOH HOH . G 5 HOH A 26 326 51 HOH HOH . G 5 HOH A 27 327 44 HOH HOH . G 5 HOH A 28 328 12 HOH HOH . G 5 HOH A 29 329 55 HOH HOH . G 5 HOH A 30 330 5 HOH HOH . G 5 HOH A 31 331 13 HOH HOH . G 5 HOH A 32 332 35 HOH HOH . G 5 HOH A 33 333 25 HOH HOH . G 5 HOH A 34 334 4 HOH HOH . G 5 HOH A 35 335 24 HOH HOH . G 5 HOH A 36 336 30 HOH HOH . G 5 HOH A 37 337 10 HOH HOH . G 5 HOH A 38 338 38 HOH HOH . G 5 HOH A 39 339 14 HOH HOH . G 5 HOH A 40 340 54 HOH HOH . G 5 HOH A 41 341 37 HOH HOH . G 5 HOH A 42 342 50 HOH HOH . G 5 HOH A 43 343 2 HOH HOH . G 5 HOH A 44 344 34 HOH HOH . G 5 HOH A 45 345 17 HOH HOH . G 5 HOH A 46 346 11 HOH HOH . G 5 HOH A 47 347 45 HOH HOH . G 5 HOH A 48 348 19 HOH HOH . G 5 HOH A 49 349 47 HOH HOH . G 5 HOH A 50 350 48 HOH HOH . G 5 HOH A 51 351 53 HOH HOH . G 5 HOH A 52 352 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 4 23.167 -23.894 7.701 1 38.78 ? P PO4 210 A 1 HETATM 2 O O1 PO4 . . . F 4 23.915 -23.365 6.471 1 37.83 ? O1 PO4 210 A 1 HETATM 3 O O2 PO4 . . . F 4 22.126 -24.911 7.268 1 38.65 ? O2 PO4 210 A 1 HETATM 4 O O3 PO4 . . . F 4 24.156 -24.553 8.649 1 38.11 ? O3 PO4 210 A 1 HETATM 5 O O4 PO4 . . . F 4 22.46 -22.75 8.419 1 39.41 ? O4 PO4 210 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 5 #