data_6R3S # _model_server_result.job_id TjBJg-AnPORDUY57Zq-L_A _model_server_result.datetime_utc '2024-12-26 19:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6R3S # _exptl.entry_id 6R3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.785 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[5-chloranyl-4-[(1~{S})-1-oxidanylethyl]pyridin-3-yl]-3,4-dihydro-2~{H}-1,8-naphthyridine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R3S _cell.length_a 70.598 _cell.length_b 71.12 _cell.length_c 169.785 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H17 Cl N4 O2' _chem_comp.formula_weight 332.785 _chem_comp.id JRE _chem_comp.mon_nstd_flag . _chem_comp.name 6-[5-chloranyl-4-[(1~{S})-1-oxidanylethyl]pyridin-3-yl]-3,4-dihydro-2~{H}-1,8-naphthyridine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C21 JRE doub 186 n n N22 C21 JRE sing 187 n n C21 N20 JRE sing 188 n n N20 C19 JRE sing 189 n n N20 C15 JRE sing 190 n n C19 C18 JRE sing 191 n n N14 C15 JRE doub 192 n y N14 C13 JRE sing 193 n y C15 C16 JRE sing 194 n y C18 C17 JRE sing 195 n n C13 C12 JRE doub 196 n y C16 C17 JRE sing 197 n n C16 C24 JRE doub 198 n y C12 C24 JRE sing 199 n y C12 C11 JRE sing 200 n n C10 C11 JRE doub 201 n y C10 N9 JRE sing 202 n y C11 C5 JRE sing 203 n y N9 C8 JRE doub 204 n y C5 C2 JRE sing 205 n n C5 C6 JRE doub 206 n y C8 C6 JRE sing 207 n y C2 C1 JRE sing 208 n n C2 O4 JRE sing 209 n n C6 CL7 JRE sing 210 n n C8 H1 JRE sing 211 n n C10 H2 JRE sing 212 n n C13 H3 JRE sing 213 n n C17 H4 JRE sing 214 n n C17 H5 JRE sing 215 n n C24 H6 JRE sing 216 n n C1 H7 JRE sing 217 n n C1 H8 JRE sing 218 n n C1 H9 JRE sing 219 n n C2 H10 JRE sing 220 n n O4 H11 JRE sing 221 n n C18 H12 JRE sing 222 n n C18 H13 JRE sing 223 n n C19 H14 JRE sing 224 n n C19 H15 JRE sing 225 n n N22 H16 JRE sing 226 n n N22 H17 JRE sing 227 n n # _atom_sites.entry_id 6R3S _atom_sites.fract_transf_matrix[1][1] 0.014165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 JRE A 1 501 1 JRE LIG . D 4 EDO B 1 301 1 EDO EDO . E 5 FMT B 1 302 2 FMT FMT . F 5 FMT B 1 303 3 FMT FMT . G 5 FMT B 1 304 4 FMT FMT . H 6 HOH A 1 601 48 HOH HOH . H 6 HOH A 2 602 19 HOH HOH . H 6 HOH A 3 603 100 HOH HOH . H 6 HOH A 4 604 8 HOH HOH . H 6 HOH A 5 605 31 HOH HOH . H 6 HOH A 6 606 34 HOH HOH . H 6 HOH A 7 607 103 HOH HOH . H 6 HOH A 8 608 154 HOH HOH . H 6 HOH A 9 609 101 HOH HOH . H 6 HOH A 10 610 96 HOH HOH . H 6 HOH A 11 611 28 HOH HOH . H 6 HOH A 12 612 55 HOH HOH . H 6 HOH A 13 613 47 HOH HOH . H 6 HOH A 14 614 13 HOH HOH . H 6 HOH A 15 615 99 HOH HOH . H 6 HOH A 16 616 107 HOH HOH . H 6 HOH A 17 617 102 HOH HOH . H 6 HOH A 18 618 63 HOH HOH . H 6 HOH A 19 619 10 HOH HOH . H 6 HOH A 20 620 51 HOH HOH . H 6 HOH A 21 621 200 HOH HOH . H 6 HOH A 22 622 33 HOH HOH . H 6 HOH A 23 623 165 HOH HOH . H 6 HOH A 24 624 97 HOH HOH . H 6 HOH A 25 625 56 HOH HOH . H 6 HOH A 26 626 138 HOH HOH . H 6 HOH A 27 627 36 HOH HOH . H 6 HOH A 28 628 53 HOH HOH . H 6 HOH A 29 629 133 HOH HOH . H 6 HOH A 30 630 42 HOH HOH . H 6 HOH A 31 631 23 HOH HOH . H 6 HOH A 32 632 25 HOH HOH . H 6 HOH A 33 633 38 HOH HOH . H 6 HOH A 34 634 2 HOH HOH . H 6 HOH A 35 635 43 HOH HOH . H 6 HOH A 36 636 139 HOH HOH . H 6 HOH A 37 637 15 HOH HOH . H 6 HOH A 38 638 61 HOH HOH . H 6 HOH A 39 639 175 HOH HOH . H 6 HOH A 40 640 113 HOH HOH . H 6 HOH A 41 641 112 HOH HOH . H 6 HOH A 42 642 169 HOH HOH . H 6 HOH A 43 643 131 HOH HOH . H 6 HOH A 44 644 110 HOH HOH . H 6 HOH A 45 645 143 HOH HOH . H 6 HOH A 46 646 106 HOH HOH . H 6 HOH A 47 647 27 HOH HOH . H 6 HOH A 48 648 45 HOH HOH . H 6 HOH A 49 649 140 HOH HOH . H 6 HOH A 50 650 54 HOH HOH . H 6 HOH A 51 651 173 HOH HOH . H 6 HOH A 52 652 20 HOH HOH . H 6 HOH A 53 653 44 HOH HOH . H 6 HOH A 54 654 40 HOH HOH . H 6 HOH A 55 655 94 HOH HOH . H 6 HOH A 56 656 41 HOH HOH . H 6 HOH A 57 657 108 HOH HOH . H 6 HOH A 58 658 142 HOH HOH . H 6 HOH A 59 659 177 HOH HOH . H 6 HOH A 60 660 49 HOH HOH . H 6 HOH A 61 661 32 HOH HOH . H 6 HOH A 62 662 137 HOH HOH . H 6 HOH A 63 663 24 HOH HOH . H 6 HOH A 64 664 59 HOH HOH . H 6 HOH A 65 665 21 HOH HOH . H 6 HOH A 66 666 204 HOH HOH . H 6 HOH A 67 667 37 HOH HOH . H 6 HOH A 68 668 201 HOH HOH . H 6 HOH A 69 669 52 HOH HOH . H 6 HOH A 70 670 104 HOH HOH . H 6 HOH A 71 671 26 HOH HOH . H 6 HOH A 72 672 95 HOH HOH . H 6 HOH A 73 673 14 HOH HOH . H 6 HOH A 74 674 181 HOH HOH . H 6 HOH A 75 675 115 HOH HOH . H 6 HOH A 76 676 144 HOH HOH . H 6 HOH A 77 677 207 HOH HOH . H 6 HOH A 78 678 136 HOH HOH . H 6 HOH A 79 679 141 HOH HOH . H 6 HOH A 80 680 114 HOH HOH . H 6 HOH A 81 681 150 HOH HOH . H 6 HOH A 82 682 172 HOH HOH . H 6 HOH A 83 683 50 HOH HOH . H 6 HOH A 84 684 92 HOH HOH . H 6 HOH A 85 685 109 HOH HOH . H 6 HOH A 86 686 16 HOH HOH . H 6 HOH A 87 687 171 HOH HOH . H 6 HOH A 88 688 29 HOH HOH . H 6 HOH A 89 689 12 HOH HOH . H 6 HOH A 90 690 9 HOH HOH . H 6 HOH A 91 691 166 HOH HOH . H 6 HOH A 92 692 111 HOH HOH . H 6 HOH A 93 693 18 HOH HOH . H 6 HOH A 94 694 39 HOH HOH . H 6 HOH A 95 695 193 HOH HOH . H 6 HOH A 96 696 58 HOH HOH . H 6 HOH A 97 697 62 HOH HOH . H 6 HOH A 98 698 30 HOH HOH . H 6 HOH A 99 699 60 HOH HOH . H 6 HOH A 100 700 170 HOH HOH . H 6 HOH A 101 701 159 HOH HOH . H 6 HOH A 102 702 167 HOH HOH . H 6 HOH A 103 703 206 HOH HOH . H 6 HOH A 104 704 91 HOH HOH . H 6 HOH A 105 705 3 HOH HOH . H 6 HOH A 106 706 35 HOH HOH . H 6 HOH A 107 707 183 HOH HOH . H 6 HOH A 108 708 203 HOH HOH . H 6 HOH A 109 709 64 HOH HOH . H 6 HOH A 110 710 168 HOH HOH . H 6 HOH A 111 711 57 HOH HOH . H 6 HOH A 112 712 178 HOH HOH . H 6 HOH A 113 713 11 HOH HOH . H 6 HOH A 114 714 184 HOH HOH . H 6 HOH A 115 715 135 HOH HOH . H 6 HOH A 116 716 209 HOH HOH . H 6 HOH A 117 717 46 HOH HOH . H 6 HOH A 118 718 105 HOH HOH . H 6 HOH A 119 719 208 HOH HOH . H 6 HOH A 120 720 90 HOH HOH . H 6 HOH A 121 721 17 HOH HOH . H 6 HOH A 122 722 176 HOH HOH . H 6 HOH A 123 723 180 HOH HOH . H 6 HOH A 124 724 22 HOH HOH . H 6 HOH A 125 725 116 HOH HOH . H 6 HOH A 126 726 185 HOH HOH . H 6 HOH A 127 727 199 HOH HOH . H 6 HOH A 128 728 205 HOH HOH . H 6 HOH A 129 729 182 HOH HOH . I 6 HOH B 1 401 190 HOH HOH . I 6 HOH B 2 402 189 HOH HOH . I 6 HOH B 3 403 188 HOH HOH . I 6 HOH B 4 404 123 HOH HOH . I 6 HOH B 5 405 153 HOH HOH . I 6 HOH B 6 406 214 HOH HOH . I 6 HOH B 7 407 78 HOH HOH . I 6 HOH B 8 408 67 HOH HOH . I 6 HOH B 9 409 156 HOH HOH . I 6 HOH B 10 410 191 HOH HOH . I 6 HOH B 11 411 68 HOH HOH . I 6 HOH B 12 412 196 HOH HOH . I 6 HOH B 13 413 4 HOH HOH . I 6 HOH B 14 414 70 HOH HOH . I 6 HOH B 15 415 127 HOH HOH . I 6 HOH B 16 416 147 HOH HOH . I 6 HOH B 17 417 210 HOH HOH . I 6 HOH B 18 418 85 HOH HOH . I 6 HOH B 19 419 82 HOH HOH . I 6 HOH B 20 420 130 HOH HOH . I 6 HOH B 21 421 7 HOH HOH . I 6 HOH B 22 422 197 HOH HOH . I 6 HOH B 23 423 211 HOH HOH . I 6 HOH B 24 424 87 HOH HOH . I 6 HOH B 25 425 213 HOH HOH . I 6 HOH B 26 426 66 HOH HOH . I 6 HOH B 27 427 86 HOH HOH . I 6 HOH B 28 428 160 HOH HOH . I 6 HOH B 29 429 121 HOH HOH . I 6 HOH B 30 430 89 HOH HOH . I 6 HOH B 31 431 88 HOH HOH . I 6 HOH B 32 432 6 HOH HOH . I 6 HOH B 33 433 75 HOH HOH . I 6 HOH B 34 434 81 HOH HOH . I 6 HOH B 35 435 5 HOH HOH . I 6 HOH B 36 436 162 HOH HOH . I 6 HOH B 37 437 98 HOH HOH . I 6 HOH B 38 438 164 HOH HOH . I 6 HOH B 39 439 118 HOH HOH . I 6 HOH B 40 440 65 HOH HOH . I 6 HOH B 41 441 79 HOH HOH . I 6 HOH B 42 442 117 HOH HOH . I 6 HOH B 43 443 155 HOH HOH . I 6 HOH B 44 444 124 HOH HOH . I 6 HOH B 45 445 128 HOH HOH . I 6 HOH B 46 446 195 HOH HOH . I 6 HOH B 47 447 120 HOH HOH . I 6 HOH B 48 448 1 HOH HOH . I 6 HOH B 49 449 72 HOH HOH . I 6 HOH B 50 450 174 HOH HOH . I 6 HOH B 51 451 132 HOH HOH . I 6 HOH B 52 452 69 HOH HOH . I 6 HOH B 53 453 186 HOH HOH . I 6 HOH B 54 454 158 HOH HOH . I 6 HOH B 55 455 157 HOH HOH . I 6 HOH B 56 456 134 HOH HOH . I 6 HOH B 57 457 152 HOH HOH . I 6 HOH B 58 458 93 HOH HOH . I 6 HOH B 59 459 194 HOH HOH . I 6 HOH B 60 460 202 HOH HOH . I 6 HOH B 61 461 84 HOH HOH . I 6 HOH B 62 462 129 HOH HOH . I 6 HOH B 63 463 71 HOH HOH . I 6 HOH B 64 464 76 HOH HOH . I 6 HOH B 65 465 146 HOH HOH . I 6 HOH B 66 466 126 HOH HOH . I 6 HOH B 67 467 187 HOH HOH . I 6 HOH B 68 468 192 HOH HOH . I 6 HOH B 69 469 122 HOH HOH . I 6 HOH B 70 470 77 HOH HOH . I 6 HOH B 71 471 163 HOH HOH . I 6 HOH B 72 472 212 HOH HOH . I 6 HOH B 73 473 149 HOH HOH . I 6 HOH B 74 474 148 HOH HOH . I 6 HOH B 75 475 80 HOH HOH . I 6 HOH B 76 476 74 HOH HOH . I 6 HOH B 77 477 151 HOH HOH . I 6 HOH B 78 478 119 HOH HOH . I 6 HOH B 79 479 145 HOH HOH . I 6 HOH B 80 480 73 HOH HOH . I 6 HOH B 81 481 125 HOH HOH . I 6 HOH B 82 482 161 HOH HOH . I 6 HOH B 83 483 198 HOH HOH . I 6 HOH B 84 484 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 JRE . . . C 3 6.816 59.849 53.202 1 41.04 ? C5 JRE 501 A 1 HETATM 2 C C6 JRE . . . C 3 7.581 60.703 54.025 1 42.53 ? C6 JRE 501 A 1 HETATM 3 C C8 JRE . . . C 3 8.757 61.25 53.521 1 37.89 ? C8 JRE 501 A 1 HETATM 4 C C10 JRE . . . C 3 8.514 60.204 51.488 1 35.56 ? C10 JRE 501 A 1 HETATM 5 C C13 JRE . . . C 3 6.044 59.146 49.721 1 39.75 ? C13 JRE 501 A 1 HETATM 6 C C15 JRE . . . C 3 5.517 56.932 49.078 1 39.61 ? C15 JRE 501 A 1 HETATM 7 C C17 JRE . . . C 3 6.206 54.988 50.538 1 46.38 ? C17 JRE 501 A 1 HETATM 8 C C21 JRE . . . C 3 4.349 56.424 46.975 1 50.7 ? C21 JRE 501 A 1 HETATM 9 C C24 JRE . . . C 3 6.714 57.344 51.13 1 38.77 ? C24 JRE 501 A 1 HETATM 10 C C1 JRE . . . C 3 4.488 60.289 54.095 1 47.2 ? C1 JRE 501 A 1 HETATM 11 C C2 JRE . . . C 3 5.516 59.223 53.701 1 49.52 ? C2 JRE 501 A 1 HETATM 12 O O4 JRE . . . C 3 5.766 58.387 54.833 1 45.28 ? O4 JRE 501 A 1 HETATM 13 CL CL7 JRE . . . C 3 7.167 61.141 55.669 1 42.52 ? CL7 JRE 501 A 1 HETATM 14 N N9 JRE . . . C 3 9.189 60.993 52.297 1 37.93 ? N9 JRE 501 A 1 HETATM 15 C C11 JRE . . . C 3 7.308 59.615 51.889 1 37.39 ? C11 JRE 501 A 1 HETATM 16 C C12 JRE . . . C 3 6.661 58.719 50.895 1 38.65 ? C12 JRE 501 A 1 HETATM 17 N N14 JRE . . . C 3 5.501 58.257 48.888 1 40.05 ? N14 JRE 501 A 1 HETATM 18 C C16 JRE . . . C 3 6.132 56.455 50.233 1 45.39 ? C16 JRE 501 A 1 HETATM 19 C C18 JRE . . . C 3 6.101 54.162 49.26 1 44.81 ? C18 JRE 501 A 1 HETATM 20 C C19 JRE . . . C 3 4.83 54.588 48.525 1 44.75 ? C19 JRE 501 A 1 HETATM 21 N N20 JRE . . . C 3 4.91 56.029 48.158 1 42.23 ? N20 JRE 501 A 1 HETATM 22 N N22 JRE . . . C 3 4.338 57.707 46.531 1 52.1 ? N22 JRE 501 A 1 HETATM 23 O O23 JRE . . . C 3 3.832 55.589 46.255 1 52.47 ? O23 JRE 501 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 770 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #