data_6R3V # _model_server_result.job_id 6-CfYPdOqg6i10lOaYS0ow _model_server_result.datetime_utc '2024-11-04 20:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6R3V # _exptl.entry_id 6R3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R3V _cell.length_a 114.06 _cell.length_b 122.78 _cell.length_c 67.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 107 B CYS 107 1_555 H S1 DTT . B DTT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc1 B OG1 THR 19 B THR 19 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 B OG1 THR 37 B THR 37 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc3 E O1B GDP . B GDP 202 1_555 F MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc4 F MG MG . B MG 203 1_555 G O3 PO4 . B PO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 F MG MG . B MG 203 1_555 J O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 F MG MG . B MG 203 1_555 J O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 347 n n P O2 PO4 sing 348 n n P O3 PO4 sing 349 n n P O4 PO4 sing 350 n n # _atom_sites.entry_id 6R3V _atom_sites.fract_transf_matrix[1][1] 0.008767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 301 1236 PO4 PO4 . D 4 MES B 1 201 1183 MES MES . E 5 GDP B 1 202 1184 GDP GDP . F 6 MG B 1 203 1185 MG MG . G 3 PO4 B 1 204 1186 PO4 PO4 . H 7 DTT B 1 205 1187 DTT DTT . I 8 HOH A 1 401 2088 HOH HOH . I 8 HOH A 2 402 2153 HOH HOH . I 8 HOH A 3 403 2113 HOH HOH . I 8 HOH A 4 404 2099 HOH HOH . I 8 HOH A 5 405 2125 HOH HOH . I 8 HOH A 6 406 2100 HOH HOH . I 8 HOH A 7 407 2147 HOH HOH . I 8 HOH A 8 408 2084 HOH HOH . I 8 HOH A 9 409 2150 HOH HOH . I 8 HOH A 10 410 2063 HOH HOH . I 8 HOH A 11 411 2028 HOH HOH . I 8 HOH A 12 412 2059 HOH HOH . I 8 HOH A 13 413 2139 HOH HOH . I 8 HOH A 14 414 2070 HOH HOH . I 8 HOH A 15 415 2102 HOH HOH . I 8 HOH A 16 416 2101 HOH HOH . I 8 HOH A 17 417 2133 HOH HOH . I 8 HOH A 18 418 2046 HOH HOH . I 8 HOH A 19 419 2003 HOH HOH . I 8 HOH A 20 420 2135 HOH HOH . I 8 HOH A 21 421 2129 HOH HOH . I 8 HOH A 22 422 2077 HOH HOH . I 8 HOH A 23 423 2111 HOH HOH . I 8 HOH A 24 424 2086 HOH HOH . I 8 HOH A 25 425 2106 HOH HOH . I 8 HOH A 26 426 2065 HOH HOH . I 8 HOH A 27 427 2085 HOH HOH . I 8 HOH A 28 428 2051 HOH HOH . I 8 HOH A 29 429 2092 HOH HOH . I 8 HOH A 30 430 2057 HOH HOH . I 8 HOH A 31 431 2093 HOH HOH . I 8 HOH A 32 432 2121 HOH HOH . I 8 HOH A 33 433 2002 HOH HOH . I 8 HOH A 34 434 2095 HOH HOH . I 8 HOH A 35 435 2096 HOH HOH . I 8 HOH A 36 436 2001 HOH HOH . I 8 HOH A 37 437 2060 HOH HOH . I 8 HOH A 38 438 2130 HOH HOH . I 8 HOH A 39 439 2020 HOH HOH . I 8 HOH A 40 440 2109 HOH HOH . I 8 HOH A 41 441 2004 HOH HOH . I 8 HOH A 42 442 2013 HOH HOH . I 8 HOH A 43 443 2149 HOH HOH . I 8 HOH A 44 444 2117 HOH HOH . I 8 HOH A 45 445 2108 HOH HOH . I 8 HOH A 46 446 2141 HOH HOH . I 8 HOH A 47 447 2023 HOH HOH . I 8 HOH A 48 448 2040 HOH HOH . I 8 HOH A 49 449 2025 HOH HOH . I 8 HOH A 50 450 2104 HOH HOH . I 8 HOH A 51 451 2066 HOH HOH . I 8 HOH A 52 452 2021 HOH HOH . I 8 HOH A 53 453 2132 HOH HOH . I 8 HOH A 54 454 2118 HOH HOH . I 8 HOH A 55 455 2015 HOH HOH . I 8 HOH A 56 456 2005 HOH HOH . I 8 HOH A 57 457 2105 HOH HOH . I 8 HOH A 58 458 2140 HOH HOH . I 8 HOH A 59 459 2137 HOH HOH . I 8 HOH A 60 460 2144 HOH HOH . I 8 HOH A 61 461 2012 HOH HOH . I 8 HOH A 62 462 2081 HOH HOH . I 8 HOH A 63 463 2071 HOH HOH . I 8 HOH A 64 464 2103 HOH HOH . I 8 HOH A 65 465 2120 HOH HOH . I 8 HOH A 66 466 2007 HOH HOH . I 8 HOH A 67 467 2017 HOH HOH . I 8 HOH A 68 468 2008 HOH HOH . I 8 HOH A 69 469 2126 HOH HOH . I 8 HOH A 70 470 2090 HOH HOH . I 8 HOH A 71 471 2024 HOH HOH . I 8 HOH A 72 472 2055 HOH HOH . I 8 HOH A 73 473 2010 HOH HOH . I 8 HOH A 74 474 2058 HOH HOH . I 8 HOH A 75 475 2034 HOH HOH . I 8 HOH A 76 476 2094 HOH HOH . I 8 HOH A 77 477 2072 HOH HOH . I 8 HOH A 78 478 2107 HOH HOH . I 8 HOH A 79 479 2143 HOH HOH . I 8 HOH A 80 480 2142 HOH HOH . I 8 HOH A 81 481 2097 HOH HOH . I 8 HOH A 82 482 2123 HOH HOH . I 8 HOH A 83 483 2022 HOH HOH . I 8 HOH A 84 484 2124 HOH HOH . I 8 HOH A 85 485 2076 HOH HOH . I 8 HOH A 86 486 2032 HOH HOH . I 8 HOH A 87 487 2146 HOH HOH . I 8 HOH A 88 488 2087 HOH HOH . I 8 HOH A 89 489 2119 HOH HOH . I 8 HOH A 90 490 2122 HOH HOH . I 8 HOH A 91 491 2134 HOH HOH . I 8 HOH A 92 492 2011 HOH HOH . I 8 HOH A 93 493 2145 HOH HOH . I 8 HOH A 94 494 2110 HOH HOH . I 8 HOH A 95 495 2014 HOH HOH . I 8 HOH A 96 496 2009 HOH HOH . I 8 HOH A 97 497 2115 HOH HOH . I 8 HOH A 98 498 2098 HOH HOH . I 8 HOH A 99 499 2062 HOH HOH . I 8 HOH A 100 500 2127 HOH HOH . I 8 HOH A 101 501 2052 HOH HOH . I 8 HOH A 102 502 2151 HOH HOH . I 8 HOH A 103 503 2033 HOH HOH . I 8 HOH A 104 504 2048 HOH HOH . I 8 HOH A 105 505 2068 HOH HOH . I 8 HOH A 106 506 2136 HOH HOH . I 8 HOH A 107 507 2074 HOH HOH . I 8 HOH A 108 508 2049 HOH HOH . I 8 HOH A 109 509 2018 HOH HOH . I 8 HOH A 110 510 2152 HOH HOH . I 8 HOH A 111 511 2026 HOH HOH . I 8 HOH A 112 512 2067 HOH HOH . I 8 HOH A 113 513 2089 HOH HOH . I 8 HOH A 114 514 2069 HOH HOH . I 8 HOH A 115 515 2114 HOH HOH . I 8 HOH A 116 516 2148 HOH HOH . I 8 HOH A 117 517 2138 HOH HOH . I 8 HOH A 118 518 2006 HOH HOH . I 8 HOH A 119 519 2112 HOH HOH . I 8 HOH A 120 520 2030 HOH HOH . I 8 HOH A 121 521 2078 HOH HOH . I 8 HOH A 122 522 2091 HOH HOH . I 8 HOH A 123 523 2016 HOH HOH . I 8 HOH A 124 524 2031 HOH HOH . I 8 HOH A 125 525 2038 HOH HOH . I 8 HOH A 126 526 2064 HOH HOH . I 8 HOH A 127 527 2019 HOH HOH . I 8 HOH A 128 528 2029 HOH HOH . I 8 HOH A 129 529 2047 HOH HOH . I 8 HOH A 130 530 2073 HOH HOH . I 8 HOH A 131 531 2082 HOH HOH . I 8 HOH A 132 532 2045 HOH HOH . J 8 HOH B 1 301 2073 HOH HOH . J 8 HOH B 2 302 2015 HOH HOH . J 8 HOH B 3 303 2037 HOH HOH . J 8 HOH B 4 304 2131 HOH HOH . J 8 HOH B 5 305 2101 HOH HOH . J 8 HOH B 6 306 2005 HOH HOH . J 8 HOH B 7 307 2028 HOH HOH . J 8 HOH B 8 308 2019 HOH HOH . J 8 HOH B 9 309 2004 HOH HOH . J 8 HOH B 10 310 2053 HOH HOH . J 8 HOH B 11 311 2095 HOH HOH . J 8 HOH B 12 312 2045 HOH HOH . J 8 HOH B 13 313 2056 HOH HOH . J 8 HOH B 14 314 2092 HOH HOH . J 8 HOH B 15 315 2086 HOH HOH . J 8 HOH B 16 316 2014 HOH HOH . J 8 HOH B 17 317 2080 HOH HOH . J 8 HOH B 18 318 2012 HOH HOH . J 8 HOH B 19 319 2082 HOH HOH . J 8 HOH B 20 320 2049 HOH HOH . J 8 HOH B 21 321 2041 HOH HOH . J 8 HOH B 22 322 2054 HOH HOH . J 8 HOH B 23 323 2077 HOH HOH . J 8 HOH B 24 324 2116 HOH HOH . J 8 HOH B 25 325 2085 HOH HOH . J 8 HOH B 26 326 2079 HOH HOH . J 8 HOH B 27 327 2043 HOH HOH . J 8 HOH B 28 328 2064 HOH HOH . J 8 HOH B 29 329 2094 HOH HOH . J 8 HOH B 30 330 2048 HOH HOH . J 8 HOH B 31 331 2065 HOH HOH . J 8 HOH B 32 332 2050 HOH HOH . J 8 HOH B 33 333 2053 HOH HOH . J 8 HOH B 34 334 2017 HOH HOH . J 8 HOH B 35 335 2018 HOH HOH . J 8 HOH B 36 336 2001 HOH HOH . J 8 HOH B 37 337 2058 HOH HOH . J 8 HOH B 38 338 2036 HOH HOH . J 8 HOH B 39 339 2031 HOH HOH . J 8 HOH B 40 340 2083 HOH HOH . J 8 HOH B 41 341 2041 HOH HOH . J 8 HOH B 42 342 2030 HOH HOH . J 8 HOH B 43 343 2071 HOH HOH . J 8 HOH B 44 344 2098 HOH HOH . J 8 HOH B 45 345 2057 HOH HOH . J 8 HOH B 46 346 2020 HOH HOH . J 8 HOH B 47 347 2009 HOH HOH . J 8 HOH B 48 348 2052 HOH HOH . J 8 HOH B 49 349 2034 HOH HOH . J 8 HOH B 50 350 2097 HOH HOH . J 8 HOH B 51 351 2022 HOH HOH . J 8 HOH B 52 352 2043 HOH HOH . J 8 HOH B 53 353 2063 HOH HOH . J 8 HOH B 54 354 2010 HOH HOH . J 8 HOH B 55 355 2084 HOH HOH . J 8 HOH B 56 356 2039 HOH HOH . J 8 HOH B 57 357 2066 HOH HOH . J 8 HOH B 58 358 2069 HOH HOH . J 8 HOH B 59 359 2054 HOH HOH . J 8 HOH B 60 360 2037 HOH HOH . J 8 HOH B 61 361 2083 HOH HOH . J 8 HOH B 62 362 2013 HOH HOH . J 8 HOH B 63 363 2128 HOH HOH . J 8 HOH B 64 364 2029 HOH HOH . J 8 HOH B 65 365 2008 HOH HOH . J 8 HOH B 66 366 2042 HOH HOH . J 8 HOH B 67 367 2024 HOH HOH . J 8 HOH B 68 368 2044 HOH HOH . J 8 HOH B 69 369 2090 HOH HOH . J 8 HOH B 70 370 2036 HOH HOH . J 8 HOH B 71 371 2059 HOH HOH . J 8 HOH B 72 372 2033 HOH HOH . J 8 HOH B 73 373 2056 HOH HOH . J 8 HOH B 74 374 2025 HOH HOH . J 8 HOH B 75 375 2093 HOH HOH . J 8 HOH B 76 376 2072 HOH HOH . J 8 HOH B 77 377 2074 HOH HOH . J 8 HOH B 78 378 2079 HOH HOH . J 8 HOH B 79 379 2040 HOH HOH . J 8 HOH B 80 380 2088 HOH HOH . J 8 HOH B 81 381 2089 HOH HOH . J 8 HOH B 82 382 2011 HOH HOH . J 8 HOH B 83 383 2075 HOH HOH . J 8 HOH B 84 384 2096 HOH HOH . J 8 HOH B 85 385 2003 HOH HOH . J 8 HOH B 86 386 2091 HOH HOH . J 8 HOH B 87 387 2076 HOH HOH . J 8 HOH B 88 388 2087 HOH HOH . J 8 HOH B 89 389 2006 HOH HOH . J 8 HOH B 90 390 2100 HOH HOH . J 8 HOH B 91 391 2021 HOH HOH . J 8 HOH B 92 392 2042 HOH HOH . J 8 HOH B 93 393 2038 HOH HOH . J 8 HOH B 94 394 2078 HOH HOH . J 8 HOH B 95 395 2046 HOH HOH . J 8 HOH B 96 396 2002 HOH HOH . J 8 HOH B 97 397 2081 HOH HOH . J 8 HOH B 98 398 2032 HOH HOH . J 8 HOH B 99 399 2050 HOH HOH . J 8 HOH B 100 400 2016 HOH HOH . J 8 HOH B 101 401 2007 HOH HOH . J 8 HOH B 102 402 2047 HOH HOH . J 8 HOH B 103 403 2099 HOH HOH . J 8 HOH B 104 404 2070 HOH HOH . J 8 HOH B 105 405 2061 HOH HOH . J 8 HOH B 106 406 2035 HOH HOH . J 8 HOH B 107 407 2023 HOH HOH . J 8 HOH B 108 408 2044 HOH HOH . J 8 HOH B 109 409 2055 HOH HOH . J 8 HOH B 110 410 2062 HOH HOH . J 8 HOH B 111 411 2075 HOH HOH . J 8 HOH B 112 412 2060 HOH HOH . J 8 HOH B 113 413 2067 HOH HOH . J 8 HOH B 114 414 2061 HOH HOH . J 8 HOH B 115 415 2035 HOH HOH . J 8 HOH B 116 416 2027 HOH HOH . J 8 HOH B 117 417 2039 HOH HOH . J 8 HOH B 118 418 2068 HOH HOH . J 8 HOH B 119 419 2051 HOH HOH . J 8 HOH B 120 420 2027 HOH HOH . J 8 HOH B 121 421 2080 HOH HOH . J 8 HOH B 122 422 2026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -50.066 -35.737 15.913 0.8 53.02 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . C 3 -49.956 -34.853 14.671 0.8 49.09 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . C 3 -51.544 -35.759 16.252 0.8 51.98 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . C 3 -49.285 -35.198 17.085 0.8 47.59 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . C 3 -49.557 -37.122 15.622 0.8 51.39 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #