data_6R3X # _model_server_result.job_id dIFrC2MeBYPmJdlnayIs3Q _model_server_result.datetime_utc '2024-11-26 21:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6r3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6R3X # _exptl.entry_id 6R3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Piperacillin (Open Form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6R3X _cell.length_a 67.738 _cell.length_b 82.899 _cell.length_c 88.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6R3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H29 N5 O7 S' _chem_comp.formula_weight 519.571 _chem_comp.id JPP _chem_comp.mon_nstd_flag . _chem_comp.name 'Piperacillin (Open Form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C04 JPP doub 160 n n O01 C01 JPP doub 161 n n O02 C04 JPP sing 162 n n C04 C18 JPP sing 163 n n O04 C06 JPP doub 164 n n C01 C20 JPP sing 165 n n C18 N02 JPP sing 166 n n C18 C19 JPP sing 167 n n C07 C12 JPP doub 168 n y C07 C05 JPP sing 169 n y C12 C16 JPP sing 170 n y C09 C10 JPP sing 171 n n C09 N01 JPP sing 172 n n C03 C19 JPP sing 173 n n N02 C17 JPP sing 174 n n N03 C20 JPP sing 175 n n N03 C21 JPP sing 176 n n C06 N01 JPP sing 177 n n C06 N04 JPP sing 178 n n C10 N JPP sing 179 n n CA C05 JPP sing 180 n n CA C21 JPP sing 181 n n CA N04 JPP sing 182 n n C19 C02 JPP sing 183 n n C19 S JPP sing 184 n n C20 C17 JPP sing 185 n n C05 C08 JPP doub 186 n y N01 C11 JPP sing 187 n n C16 C13 JPP doub 188 n y C21 O06 JPP doub 189 n n C17 S JPP sing 190 n n C08 C13 JPP sing 191 n y N C15 JPP sing 192 n n N C14 JPP sing 193 n n C11 O05 JPP doub 194 n n C11 C14 JPP sing 195 n n C C15 JPP sing 196 n n C14 O JPP doub 197 n n O02 H1 JPP sing 198 n n N02 H2 JPP sing 199 n n N03 H4 JPP sing 200 n n N04 H5 JPP sing 201 n n C17 H6 JPP sing 202 n n C18 H7 JPP sing 203 n n C20 H8 JPP sing 204 n n C01 H9 JPP sing 205 n n C02 H10 JPP sing 206 n n C02 H11 JPP sing 207 n n C02 H12 JPP sing 208 n n C03 H13 JPP sing 209 n n C03 H14 JPP sing 210 n n C03 H15 JPP sing 211 n n CA H16 JPP sing 212 n n C07 H17 JPP sing 213 n n C08 H18 JPP sing 214 n n C09 H19 JPP sing 215 n n C09 H20 JPP sing 216 n n C10 H21 JPP sing 217 n n C10 H22 JPP sing 218 n n C12 H23 JPP sing 219 n n C13 H24 JPP sing 220 n n C15 H25 JPP sing 221 n n C15 H26 JPP sing 222 n n C16 H27 JPP sing 223 n n C H28 JPP sing 224 n n C H29 JPP sing 225 n n C H30 JPP sing 226 n n # _atom_sites.entry_id 6R3X _atom_sites.fract_transf_matrix[1][1] 0.014763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JPP A 1 701 701 JPP EPP . C 3 HOH A 1 801 119 HOH HOH . C 3 HOH A 2 802 114 HOH HOH . C 3 HOH A 3 803 161 HOH HOH . C 3 HOH A 4 804 155 HOH HOH . C 3 HOH A 5 805 115 HOH HOH . C 3 HOH A 6 806 147 HOH HOH . C 3 HOH A 7 807 76 HOH HOH . C 3 HOH A 8 808 64 HOH HOH . C 3 HOH A 9 809 109 HOH HOH . C 3 HOH A 10 810 23 HOH HOH . C 3 HOH A 11 811 137 HOH HOH . C 3 HOH A 12 812 136 HOH HOH . C 3 HOH A 13 813 99 HOH HOH . C 3 HOH A 14 814 78 HOH HOH . C 3 HOH A 15 815 73 HOH HOH . C 3 HOH A 16 816 42 HOH HOH . C 3 HOH A 17 817 108 HOH HOH . C 3 HOH A 18 818 145 HOH HOH . C 3 HOH A 19 819 146 HOH HOH . C 3 HOH A 20 820 104 HOH HOH . C 3 HOH A 21 821 105 HOH HOH . C 3 HOH A 22 822 43 HOH HOH . C 3 HOH A 23 823 28 HOH HOH . C 3 HOH A 24 824 74 HOH HOH . C 3 HOH A 25 825 31 HOH HOH . C 3 HOH A 26 826 11 HOH HOH . C 3 HOH A 27 827 79 HOH HOH . C 3 HOH A 28 828 160 HOH HOH . C 3 HOH A 29 829 27 HOH HOH . C 3 HOH A 30 830 70 HOH HOH . C 3 HOH A 31 831 8 HOH HOH . C 3 HOH A 32 832 24 HOH HOH . C 3 HOH A 33 833 62 HOH HOH . C 3 HOH A 34 834 121 HOH HOH . C 3 HOH A 35 835 103 HOH HOH . C 3 HOH A 36 836 150 HOH HOH . C 3 HOH A 37 837 110 HOH HOH . C 3 HOH A 38 838 111 HOH HOH . C 3 HOH A 39 839 68 HOH HOH . C 3 HOH A 40 840 130 HOH HOH . C 3 HOH A 41 841 125 HOH HOH . C 3 HOH A 42 842 17 HOH HOH . C 3 HOH A 43 843 122 HOH HOH . C 3 HOH A 44 844 153 HOH HOH . C 3 HOH A 45 845 69 HOH HOH . C 3 HOH A 46 846 120 HOH HOH . C 3 HOH A 47 847 45 HOH HOH . C 3 HOH A 48 848 140 HOH HOH . C 3 HOH A 49 849 63 HOH HOH . C 3 HOH A 50 850 18 HOH HOH . C 3 HOH A 51 851 112 HOH HOH . C 3 HOH A 52 852 159 HOH HOH . C 3 HOH A 53 853 151 HOH HOH . C 3 HOH A 54 854 34 HOH HOH . C 3 HOH A 55 855 72 HOH HOH . C 3 HOH A 56 856 14 HOH HOH . C 3 HOH A 57 857 163 HOH HOH . C 3 HOH A 58 858 7 HOH HOH . C 3 HOH A 59 859 30 HOH HOH . C 3 HOH A 60 860 162 HOH HOH . C 3 HOH A 61 861 29 HOH HOH . C 3 HOH A 62 862 133 HOH HOH . C 3 HOH A 63 863 65 HOH HOH . C 3 HOH A 64 864 149 HOH HOH . C 3 HOH A 65 865 32 HOH HOH . C 3 HOH A 66 866 98 HOH HOH . C 3 HOH A 67 867 13 HOH HOH . C 3 HOH A 68 868 4 HOH HOH . C 3 HOH A 69 869 66 HOH HOH . C 3 HOH A 70 870 5 HOH HOH . C 3 HOH A 71 871 101 HOH HOH . C 3 HOH A 72 872 84 HOH HOH . C 3 HOH A 73 873 36 HOH HOH . C 3 HOH A 74 874 106 HOH HOH . C 3 HOH A 75 875 22 HOH HOH . C 3 HOH A 76 876 38 HOH HOH . C 3 HOH A 77 877 89 HOH HOH . C 3 HOH A 78 878 6 HOH HOH . C 3 HOH A 79 879 134 HOH HOH . C 3 HOH A 80 880 88 HOH HOH . C 3 HOH A 81 881 56 HOH HOH . C 3 HOH A 82 882 127 HOH HOH . C 3 HOH A 83 883 40 HOH HOH . C 3 HOH A 84 884 71 HOH HOH . C 3 HOH A 85 885 9 HOH HOH . C 3 HOH A 86 886 61 HOH HOH . C 3 HOH A 87 887 156 HOH HOH . C 3 HOH A 88 888 124 HOH HOH . C 3 HOH A 89 889 41 HOH HOH . C 3 HOH A 90 890 26 HOH HOH . C 3 HOH A 91 891 97 HOH HOH . C 3 HOH A 92 892 80 HOH HOH . C 3 HOH A 93 893 95 HOH HOH . C 3 HOH A 94 894 96 HOH HOH . C 3 HOH A 95 895 67 HOH HOH . C 3 HOH A 96 896 82 HOH HOH . C 3 HOH A 97 897 107 HOH HOH . C 3 HOH A 98 898 118 HOH HOH . C 3 HOH A 99 899 143 HOH HOH . C 3 HOH A 100 900 15 HOH HOH . C 3 HOH A 101 901 92 HOH HOH . C 3 HOH A 102 902 100 HOH HOH . C 3 HOH A 103 903 142 HOH HOH . C 3 HOH A 104 904 44 HOH HOH . C 3 HOH A 105 905 123 HOH HOH . C 3 HOH A 106 906 46 HOH HOH . C 3 HOH A 107 907 129 HOH HOH . C 3 HOH A 108 908 139 HOH HOH . C 3 HOH A 109 909 102 HOH HOH . C 3 HOH A 110 910 93 HOH HOH . C 3 HOH A 111 911 83 HOH HOH . C 3 HOH A 112 912 47 HOH HOH . C 3 HOH A 113 913 25 HOH HOH . C 3 HOH A 114 914 138 HOH HOH . C 3 HOH A 115 915 37 HOH HOH . C 3 HOH A 116 916 85 HOH HOH . C 3 HOH A 117 917 144 HOH HOH . C 3 HOH A 118 918 86 HOH HOH . C 3 HOH A 119 919 90 HOH HOH . C 3 HOH A 120 920 132 HOH HOH . C 3 HOH A 121 921 12 HOH HOH . C 3 HOH A 122 922 91 HOH HOH . C 3 HOH A 123 923 117 HOH HOH . C 3 HOH A 124 924 126 HOH HOH . C 3 HOH A 125 925 60 HOH HOH . C 3 HOH A 126 926 19 HOH HOH . C 3 HOH A 127 927 81 HOH HOH . C 3 HOH A 128 928 39 HOH HOH . C 3 HOH A 129 929 148 HOH HOH . C 3 HOH A 130 930 141 HOH HOH . C 3 HOH A 131 931 157 HOH HOH . C 3 HOH A 132 932 59 HOH HOH . C 3 HOH A 133 933 131 HOH HOH . C 3 HOH A 134 934 58 HOH HOH . C 3 HOH A 135 935 33 HOH HOH . C 3 HOH A 136 936 154 HOH HOH . C 3 HOH A 137 937 48 HOH HOH . C 3 HOH A 138 938 113 HOH HOH . C 3 HOH A 139 939 135 HOH HOH . C 3 HOH A 140 940 128 HOH HOH . C 3 HOH A 141 941 77 HOH HOH . C 3 HOH A 142 942 116 HOH HOH . C 3 HOH A 143 943 75 HOH HOH . C 3 HOH A 144 944 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S JPP . . . B 2 3.714 40.5 17.946 1 24.89 ? S JPP 701 A 1 HETATM 2 O O01 JPP . . . B 2 5.469 36.84 15.971 1 19.67 ? O01 JPP 701 A 1 HETATM 3 O O02 JPP . . . B 2 0.718 38.034 15.241 1 23.91 ? O02 JPP 701 A 1 HETATM 4 O O03 JPP . . . B 2 0.832 37.226 17.212 1 23.24 ? O03 JPP 701 A 1 HETATM 5 O O06 JPP . . . B 2 7.084 40.832 17.589 1 22.11 ? O06 JPP 701 A 1 HETATM 6 O O04 JPP . . . B 2 9.347 41.24 13.396 1 21.96 ? O04 JPP 701 A 1 HETATM 7 O O05 JPP . . . B 2 10.631 41.867 16.948 1 24.49 ? O05 JPP 701 A 1 HETATM 8 O O JPP . . . B 2 13.215 42.095 17.334 1 29.02 ? O JPP 701 A 1 HETATM 9 N N02 JPP . . . B 2 3.301 38.01 17.628 1 24.33 ? N02 JPP 701 A 1 HETATM 10 N N03 JPP . . . B 2 6.101 39.355 16.374 1 22.57 ? N03 JPP 701 A 1 HETATM 11 N N04 JPP . . . B 2 8.721 41.524 15.448 1 22.46 ? N04 JPP 701 A 1 HETATM 12 N N01 JPP . . . B 2 10.932 41.57 14.796 1 24.14 ? N01 JPP 701 A 1 HETATM 13 N N JPP . . . B 2 13.636 41.672 15.306 1 25.39 ? N JPP 701 A 1 HETATM 14 C C17 JPP . . . B 2 4.372 38.873 18.129 1 23.62 ? C17 JPP 701 A 1 HETATM 15 C C19 JPP . . . B 2 2.229 40.106 17.095 1 24.45 ? C19 JPP 701 A 1 HETATM 16 C C18 JPP . . . B 2 2.507 38.693 16.61 1 23.98 ? C18 JPP 701 A 1 HETATM 17 C C20 JPP . . . B 2 5.724 38.512 17.498 1 23.47 ? C20 JPP 701 A 1 HETATM 18 C C01 JPP . . . B 2 5.617 37.025 17.139 1 22.3 ? C01 JPP 701 A 1 HETATM 19 C C02 JPP . . . B 2 2.011 41.095 15.979 1 25.95 ? C02 JPP 701 A 1 HETATM 20 C C03 JPP . . . B 2 1.042 40.133 17.994 1 24.82 ? C03 JPP 701 A 1 HETATM 21 C C04 JPP . . . B 2 1.251 37.913 16.317 1 24.03 ? C04 JPP 701 A 1 HETATM 22 C C21 JPP . . . B 2 6.839 40.426 16.541 1 23.84 ? C21 JPP 701 A 1 HETATM 23 C CA JPP . . . B 2 7.352 41.121 15.302 1 23.49 ? CA JPP 701 A 1 HETATM 24 C C05 JPP . . . B 2 6.481 42.256 14.928 1 24.76 ? C05 JPP 701 A 1 HETATM 25 C C06 JPP . . . B 2 9.63 41.435 14.524 1 23.58 ? C06 JPP 701 A 1 HETATM 26 C C07 JPP . . . B 2 6.892 43.533 15.05 1 25 ? C07 JPP 701 A 1 HETATM 27 C C08 JPP . . . B 2 5.236 42.088 14.466 1 25.19 ? C08 JPP 701 A 1 HETATM 28 C C09 JPP . . . B 2 11.814 41.537 13.665 1 24.65 ? C09 JPP 701 A 1 HETATM 29 C C10 JPP . . . B 2 13.283 41.348 13.97 1 25.65 ? C10 JPP 701 A 1 HETATM 30 C C11 JPP . . . B 2 11.341 41.769 16.026 1 25.12 ? C11 JPP 701 A 1 HETATM 31 C C12 JPP . . . B 2 6.098 44.595 14.692 1 26.2 ? C12 JPP 701 A 1 HETATM 32 C C13 JPP . . . B 2 4.423 43.137 14.112 1 25.57 ? C13 JPP 701 A 1 HETATM 33 C C14 JPP . . . B 2 12.79 41.866 16.253 1 26.07 ? C14 JPP 701 A 1 HETATM 34 C C15 JPP . . . B 2 15.047 41.768 15.563 1 26.63 ? C15 JPP 701 A 1 HETATM 35 C C16 JPP . . . B 2 4.837 44.422 14.221 1 25.75 ? C16 JPP 701 A 1 HETATM 36 C C JPP . . . B 2 15.602 40.404 15.802 1 26.49 ? C JPP 701 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #