data_6R3Y
#
_model_server_result.job_id            aSoF4NLCngrmFOKJQG6Qfg 
_model_server_result.datetime_utc      '2025-09-05 04:37:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6r3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":200}' 
#
_entry.id    6R3Y 
#
_exptl.entry_id    6R3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6R3Y 
_cell.length_a            60.818 
_cell.length_b            74.383 
_cell.length_c            80.513 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6R3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 74 A CYS 74 1_555 A SG CYS 78 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc1 A NE2 HIS 155 A HIS 155 1_555 B FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 114 n n 
CHA C4D HEM doub 115 n n 
CHA HHA HEM sing 116 n n 
CHB C4A HEM sing 117 n n 
CHB C1B HEM doub 118 n n 
CHB HHB HEM sing 119 n n 
CHC C4B HEM sing 120 n n 
CHC C1C HEM doub 121 n n 
CHC HHC HEM sing 122 n n 
CHD C4C HEM doub 123 n n 
CHD C1D HEM sing 124 n n 
CHD HHD HEM sing 125 n n 
C1A C2A HEM doub 126 n y 
C1A NA HEM sing 127 n y 
C2A C3A HEM sing 128 n y 
C2A CAA HEM sing 129 n n 
C3A C4A HEM doub 130 n y 
C3A CMA HEM sing 131 n n 
C4A NA HEM sing 132 n y 
CMA HMA HEM sing 133 n n 
CMA HMAA HEM sing 134 n n 
CMA HMAB HEM sing 135 n n 
CAA CBA HEM sing 136 n n 
CAA HAA HEM sing 137 n n 
CAA HAAA HEM sing 138 n n 
CBA CGA HEM sing 139 n n 
CBA HBA HEM sing 140 n n 
CBA HBAA HEM sing 141 n n 
CGA O1A HEM doub 142 n n 
CGA O2A HEM sing 143 n n 
C1B C2B HEM sing 144 n n 
C1B NB HEM sing 145 n n 
C2B C3B HEM doub 146 n n 
C2B CMB HEM sing 147 n n 
C3B C4B HEM sing 148 n n 
C3B CAB HEM sing 149 n n 
C4B NB HEM doub 150 n n 
CMB HMB HEM sing 151 n n 
CMB HMBA HEM sing 152 n n 
CMB HMBB HEM sing 153 n n 
CAB CBB HEM doub 154 n n 
CAB HAB HEM sing 155 n n 
CBB HBB HEM sing 156 n n 
CBB HBBA HEM sing 157 n n 
C1C C2C HEM sing 158 n y 
C1C NC HEM sing 159 n y 
C2C C3C HEM doub 160 n y 
C2C CMC HEM sing 161 n n 
C3C C4C HEM sing 162 n y 
C3C CAC HEM sing 163 n n 
C4C NC HEM sing 164 n y 
CMC HMC HEM sing 165 n n 
CMC HMCA HEM sing 166 n n 
CMC HMCB HEM sing 167 n n 
CAC CBC HEM doub 168 n n 
CAC HAC HEM sing 169 n n 
CBC HBC HEM sing 170 n n 
CBC HBCA HEM sing 171 n n 
C1D C2D HEM sing 172 n n 
C1D ND HEM doub 173 n n 
C2D C3D HEM doub 174 n n 
C2D CMD HEM sing 175 n n 
C3D C4D HEM sing 176 n n 
C3D CAD HEM sing 177 n n 
C4D ND HEM sing 178 n n 
CMD HMD HEM sing 179 n n 
CMD HMDA HEM sing 180 n n 
CMD HMDB HEM sing 181 n n 
CAD CBD HEM sing 182 n n 
CAD HAD HEM sing 183 n n 
CAD HADA HEM sing 184 n n 
CBD CGD HEM sing 185 n n 
CBD HBD HEM sing 186 n n 
CBD HBDA HEM sing 187 n n 
CGD O1D HEM doub 188 n n 
CGD O2D HEM sing 189 n n 
O2A H2A HEM sing 190 n n 
O2D H2D HEM sing 191 n n 
FE NA HEM sing 192 n n 
FE NB HEM sing 193 n n 
FE NC HEM sing 194 n n 
FE ND HEM sing 195 n n 
#
_atom_sites.entry_id                     6R3Y 
_atom_sites.fract_transf_matrix[1][1]    0.016443 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 200 200 HEM HEM . 
C 3 CYN A 1 201 201 CYN CYN . 
D 4 HOH A 1 301 24 HOH HOH . 
D 4 HOH A 2 302 33 HOH HOH . 
D 4 HOH A 3 303 59 HOH HOH . 
D 4 HOH A 4 304 64 HOH HOH . 
D 4 HOH A 5 305 40 HOH HOH . 
D 4 HOH A 6 306 66 HOH HOH . 
D 4 HOH A 7 307 72 HOH HOH . 
D 4 HOH A 8 308 15 HOH HOH . 
D 4 HOH A 9 309 41 HOH HOH . 
D 4 HOH A 10 310 8 HOH HOH . 
D 4 HOH A 11 311 61 HOH HOH . 
D 4 HOH A 12 312 14 HOH HOH . 
D 4 HOH A 13 313 1 HOH HOH . 
D 4 HOH A 14 314 67 HOH HOH . 
D 4 HOH A 15 315 52 HOH HOH . 
D 4 HOH A 16 316 6 HOH HOH . 
D 4 HOH A 17 317 34 HOH HOH . 
D 4 HOH A 18 318 54 HOH HOH . 
D 4 HOH A 19 319 23 HOH HOH . 
D 4 HOH A 20 320 2 HOH HOH . 
D 4 HOH A 21 321 69 HOH HOH . 
D 4 HOH A 22 322 16 HOH HOH . 
D 4 HOH A 23 323 5 HOH HOH . 
D 4 HOH A 24 324 25 HOH HOH . 
D 4 HOH A 25 325 46 HOH HOH . 
D 4 HOH A 26 326 17 HOH HOH . 
D 4 HOH A 27 327 74 HOH HOH . 
D 4 HOH A 28 328 11 HOH HOH . 
D 4 HOH A 29 329 51 HOH HOH . 
D 4 HOH A 30 330 19 HOH HOH . 
D 4 HOH A 31 331 4 HOH HOH . 
D 4 HOH A 32 332 7 HOH HOH . 
D 4 HOH A 33 333 50 HOH HOH . 
D 4 HOH A 34 334 42 HOH HOH . 
D 4 HOH A 35 335 10 HOH HOH . 
D 4 HOH A 36 336 35 HOH HOH . 
D 4 HOH A 37 337 48 HOH HOH . 
D 4 HOH A 38 338 44 HOH HOH . 
D 4 HOH A 39 339 76 HOH HOH . 
D 4 HOH A 40 340 43 HOH HOH . 
D 4 HOH A 41 341 20 HOH HOH . 
D 4 HOH A 42 342 37 HOH HOH . 
D 4 HOH A 43 343 32 HOH HOH . 
D 4 HOH A 44 344 26 HOH HOH . 
D 4 HOH A 45 345 22 HOH HOH . 
D 4 HOH A 46 346 53 HOH HOH . 
D 4 HOH A 47 347 36 HOH HOH . 
D 4 HOH A 48 348 28 HOH HOH . 
D 4 HOH A 49 349 57 HOH HOH . 
D 4 HOH A 50 350 27 HOH HOH . 
D 4 HOH A 51 351 73 HOH HOH . 
D 4 HOH A 52 352 75 HOH HOH . 
D 4 HOH A 53 353 13 HOH HOH . 
D 4 HOH A 54 354 47 HOH HOH . 
D 4 HOH A 55 355 12 HOH HOH . 
D 4 HOH A 56 356 30 HOH HOH . 
D 4 HOH A 57 357 18 HOH HOH . 
D 4 HOH A 58 358 63 HOH HOH . 
D 4 HOH A 59 359 45 HOH HOH . 
D 4 HOH A 60 360 58 HOH HOH . 
D 4 HOH A 61 361 55 HOH HOH . 
D 4 HOH A 62 362 9 HOH HOH . 
D 4 HOH A 63 363 56 HOH HOH . 
D 4 HOH A 64 364 3 HOH HOH . 
D 4 HOH A 65 365 65 HOH HOH . 
D 4 HOH A 66 366 29 HOH HOH . 
D 4 HOH A 67 367 77 HOH HOH . 
D 4 HOH A 68 368 49 HOH HOH . 
D 4 HOH A 69 369 71 HOH HOH . 
D 4 HOH A 70 370 31 HOH HOH . 
D 4 HOH A 71 371 62 HOH HOH . 
D 4 HOH A 72 372 70 HOH HOH . 
D 4 HOH A 73 373 38 HOH HOH . 
D 4 HOH A 74 374 21 HOH HOH . 
D 4 HOH A 75 375 68 HOH HOH . 
D 4 HOH A 76 376 60 HOH HOH . 
D 4 HOH A 77 377 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 18.147 34.481 12.228 1 16.38 ? CHA HEM 200 A 1 
HETATM 2 C CHB HEM . . . B 2 17.034 32.836 16.658 1 12.18 ? CHB HEM 200 A 1 
HETATM 3 C CHC HEM . . . B 2 12.57 31.643 15.127 1 11.98 ? CHC HEM 200 A 1 
HETATM 4 C CHD HEM . . . B 2 13.58 33.682 10.822 1 12.51 ? CHD HEM 200 A 1 
HETATM 5 C C1A HEM . . . B 2 18.197 34.111 13.547 1 14.82 ? C1A HEM 200 A 1 
HETATM 6 C C2A HEM . . . B 2 19.317 34.398 14.393 1 15.91 ? C2A HEM 200 A 1 
HETATM 7 C C3A HEM . . . B 2 18.992 33.973 15.644 1 13.65 ? C3A HEM 200 A 1 
HETATM 8 C C4A HEM . . . B 2 17.694 33.384 15.581 1 13.81 ? C4A HEM 200 A 1 
HETATM 9 C CMA HEM . . . B 2 19.88 34.07 16.862 1 14.06 ? CMA HEM 200 A 1 
HETATM 10 C CAA HEM . . . B 2 20.628 35.089 13.995 1 18 ? CAA HEM 200 A 1 
HETATM 11 C CBA HEM . . . B 2 20.718 36.495 14.588 1 22.21 ? CBA HEM 200 A 1 
HETATM 12 C CGA HEM . . . B 2 19.686 37.348 13.936 1 27.94 ? CGA HEM 200 A 1 
HETATM 13 O O1A HEM . . . B 2 18.822 37.935 14.639 1 36.39 ? O1A HEM 200 A 1 
HETATM 14 O O2A HEM . . . B 2 19.638 37.403 12.676 1 33.19 ? O2A HEM 200 A 1 
HETATM 15 C C1B HEM . . . B 2 15.725 32.347 16.607 1 12.57 ? C1B HEM 200 A 1 
HETATM 16 C C2B HEM . . . B 2 15.06 31.758 17.725 1 11.99 ? C2B HEM 200 A 1 
HETATM 17 C C3B HEM . . . B 2 13.784 31.395 17.311 1 11.28 ? C3B HEM 200 A 1 
HETATM 18 C C4B HEM . . . B 2 13.715 31.803 15.898 1 11.9 ? C4B HEM 200 A 1 
HETATM 19 C CMB HEM . . . B 2 15.671 31.634 19.102 1 11.58 ? CMB HEM 200 A 1 
HETATM 20 C CAB HEM . . . B 2 12.674 30.721 18.021 1 11.9 ? CAB HEM 200 A 1 
HETATM 21 C CBB HEM . . . B 2 12.897 29.874 19.027 1 11.91 ? CBB HEM 200 A 1 
HETATM 22 C C1C HEM . . . B 2 12.44 32.172 13.821 1 11.71 ? C1C HEM 200 A 1 
HETATM 23 C C2C HEM . . . B 2 11.244 32.191 13.093 1 10.96 ? C2C HEM 200 A 1 
HETATM 24 C C3C HEM . . . B 2 11.524 32.766 11.863 1 11.91 ? C3C HEM 200 A 1 
HETATM 25 C C4C HEM . . . B 2 12.923 33.088 11.867 1 12.61 ? C4C HEM 200 A 1 
HETATM 26 C CMC HEM . . . B 2 9.952 31.617 13.562 1 10.78 ? CMC HEM 200 A 1 
HETATM 27 C CAC HEM . . . B 2 10.604 33.161 10.787 1 12.48 ? CAC HEM 200 A 1 
HETATM 28 C CBC HEM . . . B 2 9.367 33.606 11.044 1 13.55 ? CBC HEM 200 A 1 
HETATM 29 C C1D HEM . . . B 2 14.922 34.04 10.861 1 13.44 ? C1D HEM 200 A 1 
HETATM 30 C C2D HEM . . . B 2 15.591 34.694 9.719 1 14.42 ? C2D HEM 200 A 1 
HETATM 31 C C3D HEM . . . B 2 16.863 34.908 10.108 1 15.25 ? C3D HEM 200 A 1 
HETATM 32 C C4D HEM . . . B 2 16.968 34.393 11.503 1 15.56 ? C4D HEM 200 A 1 
HETATM 33 C CMD HEM . . . B 2 14.975 35.1 8.378 1 14.38 ? CMD HEM 200 A 1 
HETATM 34 C CAD HEM . . . B 2 17.891 35.765 9.407 1 17.9 ? CAD HEM 200 A 1 
HETATM 35 C CBD HEM . . . B 2 18.729 35.03 8.431 1 19.65 ? CBD HEM 200 A 1 
HETATM 36 C CGD HEM . . . B 2 19.615 36.072 7.723 1 18.07 ? CGD HEM 200 A 1 
HETATM 37 O O1D HEM . . . B 2 19.7 37.298 8.1 1 24.19 ? O1D HEM 200 A 1 
HETATM 38 O O2D HEM . . . B 2 20.204 35.718 6.732 1 18.75 ? O2D HEM 200 A 1 
HETATM 39 N NA HEM . . . B 2 17.232 33.446 14.296 1 12.55 ? NA HEM 200 A 1 
HETATM 40 N NB HEM . . . B 2 14.896 32.343 15.545 1 12.97 ? NB HEM 200 A 1 
HETATM 41 N NC HEM . . . B 2 13.42 32.732 13.085 1 11.67 ? NC HEM 200 A 1 
HETATM 42 N ND HEM . . . B 2 15.795 33.868 11.898 1 12.96 ? ND HEM 200 A 1 
HETATM 43 FE FE HEM . . . B 2 15.388 33.034 13.617 1 12.77 ? FE HEM 200 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#